D3.2 publication draft
Dear all, As you know we have to provide the deliverable: “D3.2 Publication on the Pulsar Network, integrated in workflow management systems”. For this reason you can find here a link to the manuscript summarising our work: https://docs.google.com/document/d/15LjWCS3lWW2j4Czw1_TW1ve0qHSCSd6p-DerYmTC... Please edit it in track mode, and add all your feedback and suggestions. In the next days I’ll add all citations and start working on the Deliverable 3.2 (https://docs.google.com/document/d/1LrPZ_ktuQvREGp-Up_ZTUXo4eqM2bHfj2-9ymYrD...) for the final upload on the participant portal. Currently, our target is to upload it on zenodo/biorxiv for the first week of August, and attach it to the Deliverable. What is missing: the section about TESP and WfExS. I’d like to integrate a section about TESP and, if we can provide the proof of concept required, also the integration with WfExS. In this case we will modify the manuscript accordingly. Next steps: Until 31st July 2025, 12.00 pm, please review the manuscript in suggestion mode. First week of August I’ll integrate changes and I’ll publish the first version on biorarxiv or zenodo. We will include the manuscript in the last deliverable of our WP, to be uploaded on the Participant Portal. Thank you all for the feedbacks and suggestions, Marco
Dear all, I’ve added an Author List section, after references, at the end of the manuscript. Please add yourselves, with name/surname, institution and e-mail. Of course, also feedback and suggestions to the manuscript are more than welcome. Kind regards, Marco
Il giorno 22 lug 2025, alle ore 17:18, Marco Tangaro <ma.tangaro@ibiom.cnr.it> ha scritto:
Dear all, As you know we have to provide the deliverable: “D3.2 Publication on the Pulsar Network, integrated in workflow management systems”. For this reason you can find here a link to the manuscript summarising our work: https://docs.google.com/document/d/15LjWCS3lWW2j4Czw1_TW1ve0qHSCSd6p-DerYmTC... Please edit it in track mode, and add all your feedback and suggestions.
In the next days I’ll add all citations and start working on the Deliverable 3.2 (https://docs.google.com/document/d/1LrPZ_ktuQvREGp-Up_ZTUXo4eqM2bHfj2-9ymYrD...) for the final upload on the participant portal. Currently, our target is to upload it on zenodo/biorxiv for the first week of August, and attach it to the Deliverable.
What is missing: the section about TESP and WfExS. I’d like to integrate a section about TESP and, if we can provide the proof of concept required, also the integration with WfExS. In this case we will modify the manuscript accordingly.
Next steps: Until 31st July 2025, 12.00 pm, please review the manuscript in suggestion mode. First week of August I’ll integrate changes and I’ll publish the first version on biorarxiv or zenodo. We will include the manuscript in the last deliverable of our WP, to be uploaded on the Participant Portal.
Thank you all for the feedbacks and suggestions, Marco
Dear Marco, I have been rewriting the paragraph about WfExS and TES . Maybe the style is not synchronised with the narrative of the manuscript, so feel free to change it. I also have a question, as we (BSC group) do not have yet a reference manuscript to cite WfExS-backend, should we add a paragraph briefly introducing what it is? Best, José María On 24/7/25 16:01, Marco Tangaro wrote:
Dear all, I’ve added an Author List section, after references, at the end of the manuscript. Please add yourselves, with name/surname, institution and e-mail.
Of course, also feedback and suggestions to the manuscript are more than welcome. Kind regards, Marco
Il giorno 22 lug 2025, alle ore 17:18, Marco Tangaro <ma.tangaro@ibiom.cnr.it> ha scritto:
Dear all,
As you know we have to provide the deliverable: “D3.2 Publication on the Pulsar Network, integrated in workflow management systems”.
For this reason you can find here a link to the manuscript summarising our work:
https://docs.google.com/document/d/15LjWCS3lWW2j4Czw1_TW1ve0qHSCSd6p-DerYmTC... <https://docs.google.com/document/d/15LjWCS3lWW2j4Czw1_TW1ve0qHSCSd6p-DerYmTCgfI/edit?usp=sharing>
Please edit it in track mode, and add all your feedback and suggestions.
In the next days I’ll add all citations and start working on the Deliverable 3.2 (https://docs.google.com/document/d/1LrPZ_ktuQvREGp-Up_ZTUXo4eqM2bHfj2-9ymYrD... <https://docs.google.com/document/d/1LrPZ_ktuQvREGp-Up_ZTUXo4eqM2bHfj2-9ymYrDuDY/edit?usp=sharing>) for the final upload on the participant portal.
Currently, our target is to upload it on zenodo/biorxiv for the first week of August, and attach it to the Deliverable.
What is missing: the section about TESP and WfExS. I’d like to integrate a section about TESP and, if we can provide the proof of concept required, also the integration with WfExS. In this case we will modify the manuscript accordingly.
Next steps:
* Until 31st July 2025, 12.00 pm, please review the manuscript in suggestion mode. * First week of August I’ll integrate changes and I’ll publish the first version on biorarxiv or zenodo. *
We will include the manuscript in the last deliverable of our WP, to be uploaded on the Participant Portal.
Thank you all for the feedbacks and suggestions,
Marco
_______________________________________________ Esg-wp3 mailing list --esg-wp3@lists.galaxyproject.org To unsubscribe send an email toesg-wp3-leave@lists.galaxyproject.org --
"There is no reason why anybody would want a computer in their home" - Ken Olson, founder of DEC 1977 "640K ought to be enough for anybody" - Bill Gates, 1981 "Nobody will ever outgrow a 20Mb hard drive." - ??? "The three virtues of a programmer: laziness, impatience and hubris" - Larry Wall, creator of Perl "Premature optimization is the root of all evil." - Donald Knuth "Los ordenadores son inútiles. Sólo pueden darte respuestas" - Pablo Ruíz Picasso José María Fernández González Senior Research Scientist e-mail:jose.m.fernandez@bsc.es INB Node, Life Sciences Department Torre Girona Building, 1st floor, Barcelona Supercomputing Center C/. Jordi Girona, 31 Zip Code: 08034 Barcelona (Spain) Phone: (+34) 934117074
Dear JM, dear all I’ve introduced WfExS in section: Standardized job submission and workflow portability While the section dedicated to WfExS/TESP, with the Proof Of Concept is: Other Workflow management systems integration I would go with WfExS as method is in the first section, while TESP and the PoC should be in the Results section. Then we can add a paragraph in the Discussion section. Currently we are missing those paragraphs (and the PoC). Please keep in mind we need to urgently publish a first draft by the first week of august, to deliver D3.2. I’ll send everybody another reminder later today. Kind regards, Marco
Il giorno 29 lug 2025, alle ore 22:02, José María Fernández via Esg-wp3 <esg-wp3@lists.galaxyproject.org> ha scritto:
Dear Marco, I have been rewriting the paragraph about WfExS and TES . Maybe the style is not synchronised with the narrative of the manuscript, so feel free to change it.
I also have a question, as we (BSC group) do not have yet a reference manuscript to cite WfExS-backend, should we add a paragraph briefly introducing what it is?
Best, José María
On 24/7/25 16:01, Marco Tangaro wrote:
Dear all, I’ve added an Author List section, after references, at the end of the manuscript. Please add yourselves, with name/surname, institution and e-mail.
Of course, also feedback and suggestions to the manuscript are more than welcome. Kind regards, Marco
Il giorno 22 lug 2025, alle ore 17:18, Marco Tangaro <ma.tangaro@ibiom.cnr.it> <mailto:ma.tangaro@ibiom.cnr.it> ha scritto:
Dear all, As you know we have to provide the deliverable: “D3.2 Publication on the Pulsar Network, integrated in workflow management systems”. For this reason you can find here a link to the manuscript summarising our work: https://docs.google.com/document/d/15LjWCS3lWW2j4Czw1_TW1ve0qHSCSd6p-DerYmTC... Please edit it in track mode, and add all your feedback and suggestions.
In the next days I’ll add all citations and start working on the Deliverable 3.2 (https://docs.google.com/document/d/1LrPZ_ktuQvREGp-Up_ZTUXo4eqM2bHfj2-9ymYrD...) for the final upload on the participant portal. Currently, our target is to upload it on zenodo/biorxiv for the first week of August, and attach it to the Deliverable.
What is missing: the section about TESP and WfExS. I’d like to integrate a section about TESP and, if we can provide the proof of concept required, also the integration with WfExS. In this case we will modify the manuscript accordingly.
Next steps: Until 31st July 2025, 12.00 pm, please review the manuscript in suggestion mode. First week of August I’ll integrate changes and I’ll publish the first version on biorarxiv or zenodo. We will include the manuscript in the last deliverable of our WP, to be uploaded on the Participant Portal.
Thank you all for the feedbacks and suggestions, Marco
_______________________________________________ Esg-wp3 mailing list -- esg-wp3@lists.galaxyproject.org <mailto:esg-wp3@lists.galaxyproject.org> To unsubscribe send an email to esg-wp3-leave@lists.galaxyproject.org <mailto:esg-wp3-leave@lists.galaxyproject.org> -- "There is no reason why anybody would want a computer in their home" - Ken Olson, founder of DEC 1977 "640K ought to be enough for anybody" - Bill Gates, 1981 "Nobody will ever outgrow a 20Mb hard drive." - ???
"The three virtues of a programmer: laziness, impatience and hubris" - Larry Wall, creator of Perl "Premature optimization is the root of all evil." - Donald Knuth
"Los ordenadores son inútiles. Sólo pueden darte respuestas" - Pablo Ruíz Picasso
José María Fernández González Senior Research Scientist e-mail: jose.m.fernandez@bsc.es <mailto:jose.m.fernandez@bsc.es> INB Node, Life Sciences Department Torre Girona Building, 1st floor, Barcelona Supercomputing Center C/. Jordi Girona, 31 Zip Code: 08034 Barcelona (Spain) Phone: (+34) 934117074 _______________________________________________ Esg-wp3 mailing list -- esg-wp3@lists.galaxyproject.org To unsubscribe send an email to esg-wp3-leave@lists.galaxyproject.org
participants (2)
-
José María Fernández -
Marco Tangaro