- Esg-wp5 - lists.galaxyproject.org

EuroScienceGateway successfully completed | Moving to final reporting
by Armin Dadras 31 Aug '25

31 Aug '25

Dear Partners, I would like to thank you all for your contributions throughout the three years of EuroScienceGateway. Together we successfully achieved all deliverables and milestones. Results, publications, dissemination activities, and other reports have been updated to the EU portal. Over the next two months, we will focus on preparing the final financial and technical reports. I will reach out to you by mid-September with further details on how we will proceed as a consortium. In the meantime, I encourage you to visit our Zenodo Community to see the achievements of the project: https://zenodo.org/communities/eurosciencegateway <https://zenodo.org/communities/eurosciencegateway/?utm_source=chatgpt.com> If you have additional records to contribute, please register them there. Do not hesitate to contact me if you need assistance with this process. Many of us, are going to meet and discuss the project during its final meeting at European Galaxy Days. Fill free to register for the event, if you have not done that: https://galaxyproject.org/events/2025-10-01-egd2025/ Once again, thank you for your collaboration and commitment that made EuroScienceGateway a success. Best regards, Armin Dadras

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Meeting for Finalizing the Deliverable 5.2 of EuroScienceGateway – Aug 14 10:00 - 12:00
by Armin Dadras 13 Aug '25

13 Aug '25

Dear WP5 partners, Nikolay suggested holding a short meeting on August 14 to finalize "D 5.2 Publication of the usage of EuroScienceGateway by multiple communities", for those who are available and have not yet reviewed it. I will be online from 10:00 to 12:00 to work on the document. Zoom link: https://uni-freiburg.zoom.us/j/64145321765?pwd=R0xyTUxSMVNjTnRwZzB2cWdUbEY5… Deliverable link: https://docs.google.com/document/d/1SgukP0doI61rtK7VDcAzF5odpSn90EkyRA89EbV… If the meeting time is not convenient, please feel free to review and contribute asynchronously. We aim to submit the deliverable to Zenodo and the EU Portal on August 19, 2025, at 13:00. Best regards, Armin

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Review Request: Draft of WP5 Deliverable (D5.2) | Deadline: 19.08.2025
by Armin Dadras 28 Jul '25

28 Jul '25

Dear WP5 partners, As discussed, we need to submit Deliverable D5.2 – “Publication of the usage of EuroScienceGateway by multiple communities” to both Zenodo and the EU Grant Portal. In coordination with the WP5 lead, I compiled a draft based on your blog posts on the EuroScienceGateway website and your contributions to the final technical report. I’ve done my best to reflect your input accurately, but as I lack a technical background, I kindly ask you to review the document by 19 August. Please use the following link in Suggestion mode to provide your feedback: https://docs.google.com/document/d/1SgukP0doI61rtK7VDcAzF5odpSn90EkyRA89EbV… If you'd like to be listed as an author, feel free to add your name on the respective field. The final version will be submitted to Zenodo on 19 August at 13:00, and subsequently uploaded to the EU Grant Portal with the DOI on the same day. Let me know if you have any questions or need support. Best regards, Armin

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WP5 workflows registration/update on WorkflowHub – Instructions from WP2
by Armin Dadras 23 Jul '25

23 Jul '25

Dear ESG WP5 members, As discussed during our last WP5 meeting, I’m pleased to share the detailed instructions from Eli Chadwick (WP2) regarding the registration of workflows on WorkflowHub. These steps are important to ensure all workflows developed with ESG funding are properly documented, findable, and citable for the final EuroScienceGateway report. Please review Eli’s message below carefully. If you have any questions, feel free to reach out to either Eli or me directly. Best regards, Armin *Message from Eli Chadwick (WP2):* Hi ESG WP5 members, As we approach the end of the EuroScienceGateway project, as part of WP2 we need to ensure that all the computational workflows developed with ESG funding are registered on WorkflowHub <https://workflowhub.eu/> and linked to the ESG Team <https://workflowhub.eu/projects/166#workflows>, so that they are readily findable and so that we can cite them in the final report. This includes workflows developed in WP5. We have created the EuroScienceGateway Guide to WorkflowHub <https://workflowhub.eu/sops/8/content_blobs/534/view_content> to help you to register your workflows, and I've summarized the necessary steps below. I will come along to the next WP5 meeting to check in - please make sure your workflows are linked to the ESG Team by then, even if they aren't completely ready to publish. *If you need to register workflows:* * Follow the guide linked above to register your workflows, including minting DOIs for them. *If you have workflows registered already:* * Check that your workflows are *linked to* the EuroScienceGateway Team <https://workflowhub.eu/projects/166> on WorkflowHub. They should appear in this list: https://workflowhub.eu/projects/166#workflows. If your workflows are not linked to the ESG Team, we do not know that they exist! o To add your workflow to the Team, click "Actions" > "Manage Workflow", then select the EuroScienceGateway Team (you may need to request to join the team first if you are not already a member). * Check that your workflows are*up to date*. If you have made changes to the workflow since its "Last updated" date on WorkflowHub, you should create a new version (do not re-register the workflow from scratch). o See the "Keeping workflows up-to-date" section of the guide for how to update a workflow and its metadata. * If your workflow is ready to be cited in the final report, *mint a DOI* for the workflow. You should reference this DOI when mentioning the workflow in the final report. o See the "Publishing workflows" section of the guide for the steps to create a DOI. If your workflow was registered by somebody else (such as the batch submitted in Feb 2024), the submitter can give you permission to manage the workflow to complete the steps above - so contact them if needed (or contact me if you don't know how to get in touch with them). *If you have used someone else's workflow for ESG-related work:* * Assuming the workflow is already on WorkflowHub, add it to the "Workflows in EuroScienceGateway <https://workflowhub.eu/collections/13>" Collection (this is separate to the Team) - see the "Adding and removing a Workflow to one of the EuroScienceGateway collections" section of the guide for how to do this. You do not need to be an owner of the workflow. * An example might be if you used a pre-existing workflow from the GTN for an ESG-related training workshop. If you have questions or need any help, let me know! Thanks, Eli -- Eli Chadwick (he/him and they/them) Senior Research Software Engineer University of Manchester eli.chadwick(a)manchester.ac.uk

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Invitation Letter for European Galaxy Days 2025 & Final EuroScienceGateway Meeting
by Armin Dadras 14 Jul '25

14 Jul '25

Dear all, Some of our partners have mentioned that they require an official invitation letter in order to register for the European Galaxy Days 2025 and the final EuroScienceGateway meeting (October 1–3, 2025 – event details and registration: https://galaxyproject.org/events/2025-10-01-egd2025/ ) and to initiate travel approval procedures at their institutions. If you need such a letter and have not yet received one, please don’t hesitate to contact me at dadras(a)informatik.uni-freiburg.de. Thank you very much. Best regards, Armin Dadras

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reminder meeting WP5 tomorrow 10:00 CET
by Nikolay Aleksandrov Vazov 12 Jun '25

12 Jun '25

Hi, just a reminder about the meeting tomorrow. Link to the rolling notes https://docs.google.com/document/d/1oK7w-jjZ8D2h_tijhhzz6BX5QAzPvKfhQ5KAArb… zoom: https://uni-freiburg.zoom.us/j/64145321765?pwd=R0xyTUxSMVNjTnRwZzB2cWdUbEY5… We shall discuss the last report preparation See you all Nikolay Nikolay Vazov, PhD Senior Engineer - Scientific Computing Services<https://www.usit.uio.no/english/about/organisation/rde/scs/index.html> University of Oslo

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Technical report - narrative part - URGENT
by Nikolay Aleksandrov Vazov 11 Jun '25

11 Jun '25

Hi, everybody, Sorry for the short notice but we have to urgently finish the technical report for WP5. The link is here https://docs.google.com/document/d/1c-fHX3FjbGzKXWebIvDkRkGR0MzMR4240npN9S2… For all the 3 communities, please fill in the section September 2023- August 2025 Achievements Our part starts at p.27. Once you have finished it, I will compile the part in 1.3, right below, our part will be Impact on communities The deadline is end of this week. We will discuss this at the meeting on Friday too. Best regards Nikolay Nikolay Vazov, PhD Senior Engineer - Scientific Computing Services<https://www.usit.uio.no/english/about/organisation/rde/scs/index.html> University of Oslo

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WP5 meeting tomorrow
by Nikolay Aleksandrov Vazov 08 May '25

08 May '25

Hi, this is a reminder for the WP5 meeting tomorrow Rolling notes : https://docs.google.com/document/d/1oK7w-jjZ8D2h_tijhhzz6BX5QAzPvKfhQ5KAArb… [https://lh7-us.googleusercontent.com/docs/AHkbwyLMCkETo3vA6psT8whjs1dmoM0UQ…]<https://docs.google.com/document/d/1oK7w-jjZ8D2h_tijhhzz6BX5QAzPvKfhQ5KAArb…> Rolling-notes-WP5<https://docs.google.com/document/d/1oK7w-jjZ8D2h_tijhhzz6BX5QAzPvKfhQ5KAArb…> EuroScienceGateway WP5 rolling minutes Feel free to help take minutes during the calls! Regular schedule: Second Friday/month 09:00 GMT/ 10:00 CET Regular Zoom: https://uni-freiburg.zoom.us/j/64t145321765?pwd=R0xyTUxSMVNjTnRwZzB2cWdUbEY… WP5 mailing list: esg-wp5(a)lists.galaxyproject.org... docs.google.com The zoom link is in the rolling notes. See you tomorrow. Nikolay Vazov, PhD Senior Engineer - Scientific Computing Services<https://www.usit.uio.no/english/about/organisation/rde/scs/index.html> University of Oslo

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Reminder about the ESG WP5 meeting tomorrow
by Nikolay Aleksandrov Vazov 10 Apr '25

10 Apr '25

Hi, this is a reminder for the meeting tomorrow. Rollling notes https://docs.google.com/document/d/1oK7w-jjZ8D2h_tijhhzz6BX5QAzPvKfhQ5KAArb… Zoom link https://uni-freiburg.zoom.us/j/64t145321765?pwd=R0xyTUxSMVNjTnRwZzB2cWdUbEY…<https://uni-freiburg.zoom.us/j/64145321765?pwd=R0xyTUxSMVNjTnRwZzB2cWdUbEY5…> See you tomorrow. Nikolay Nikolay Vazov, PhD Senior Engineer - Scientific Computing Services<https://www.usit.uio.no/english/about/organisation/rde/scs/index.html> University of Oslo

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reminder meeting tomorrow 10:00 CET
by Nikolay Aleksandrov Vazov 13 Mar '25

13 Mar '25

Hi, everybody, Just to remind you about the meeting tomorrow at 10:00 CET The link to the rolling notes is here 🙂 https://docs.google.com/document/d/1oK7w-jjZ8D2h_tijhhzz6BX5QAzPvKfhQ5KAArb… The zoom link is https://uni-freiburg.zoom.us/j/64145321765?pwd=R0xyTUxSMVNjTnRwZzB2cWdUbEY5… See you all Nikolay Nikolay Vazov, PhD Senior Engineer - Scientific Computing Services<https://www.usit.uio.no/english/about/organisation/rde/scs/index.html> University of Oslo

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