Dear Galaxy Community,
The latest Galaxy distribution has been released: March
12, 2012 Galaxy Development News Brief
Mercurial pull:
new: % hg clone http://www.bx.psu.edu/hg/galaxy
galaxy-dist
upgrade: % hg pull -u -r 40f1816d6857
Important Upcoming Changes to Tool Organization:
The Emboss tools and Emboss datatypes will be eliminated from
the Galaxy distribution in the NEXT release. Other tools
currently in the Galaxy distribution will be eliminated in following
releases. Those hosting local Galaxy instances should read this
revised "Migrating
tools" section of the Galaxy tool shed wiki to
understand how this process will work:
Migrating
tools from the Galaxy distribution to the Galaxy Main tool shed
(Summary) In 2012, the Galaxy development team will begin the
process of migrating the tools that are currently available in
the Galaxy distribution to the Galaxy Main tool shed. This
will enable those that host local Galaxy instances much more
flexibility in choosing to provide only those specific tools in
which their users are interested. Read
more...
Release Highlights:
- RNA-Seq Tools: Added CuffMerge
version 1.0.0, Updated TopHat
default parameters
- Visualize ENCODE "peak" datatype
tracks in the Galaxy Track Browser (aka Trackster)
- Multiple Workflow updates including enhancements
to/input dataset options, display modes, and sharing
Need help with a local instance?
- Search with our custom google tools:
Thanks for using Galaxy,
The Galaxy team
http://usegalaxy.org
http://getgalaxy.org
http://galaxyproject.org
http://galaxyproject.org/wiki