Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: e2d6b6dc2c500027d4c4daf138d2ef5a9fee334f https://github.com/galaxyproject/galaxy/commit/e2d6b6dc2c500027d4c4daf138d2e... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-09 (Sun, 09 Apr 2017)
Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/layout/menu.js A client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/layout/menu.js.map A static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js A static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css
Log Message: ----------- Initial commit for transforming mako files for workflow into plain javascript
Commit: b7af4a3cf4acb7489f4e181b29997374f90cfce2 https://github.com/galaxyproject/galaxy/commit/b7af4a3cf4acb7489f4e181b29997... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-20 (Thu, 20 Apr 2017)
Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/workflow/workflow.js M static/maps/layout/menu.js.map M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js M static/scripts/mvc/workflow/workflow.js
Log Message: ----------- Create new workflow
Commit: a421eb54bf9ad62f4891275d9e60292e4022e60e https://github.com/galaxyproject/galaxy/commit/a421eb54bf9ad62f4891275d9e602... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-20 (Thu, 20 Apr 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css
Log Message: ----------- Show workflow information using workflow select list
Commit: 07cdbd209c7454232fb6936125448abb2f62e948 https://github.com/galaxyproject/galaxy/commit/07cdbd209c7454232fb6936125448... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-25 (Tue, 25 Apr 2017)
Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/layout/menu.js.map M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css
Log Message: ----------- Fixing the routing issue and showing the main workflow dashboard in the center panel
Commit: 14f3697bce50ae4e898ff15e1b7ee3b9938eecc9 https://github.com/galaxyproject/galaxy/commit/14f3697bce50ae4e898ff15e1b7ee... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-25 (Tue, 25 Apr 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css
Log Message: ----------- Adding actions dropdown for workflows
Commit: 18f5b7d71c4c8718726394b57e8b478b54d1432d https://github.com/galaxyproject/galaxy/commit/18f5b7d71c4c8718726394b57e8b4... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-25 (Tue, 25 Apr 2017)
Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py
Log Message: ----------- Redirecting to workflow list page once actions are over
Commit: 26822859c13d19cc86185f68fe5145439d04af97 https://github.com/galaxyproject/galaxy/commit/26822859c13d19cc86185f68fe514... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-26 (Wed, 26 Apr 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css
Log Message: ----------- Adding shared workflow and congifure workflow options
Commit: 9b13a87cdbdbae0542b289b25ece8458c4584aad https://github.com/galaxyproject/galaxy/commit/9b13a87cdbdbae0542b289b25ece8... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-26 (Wed, 26 Apr 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css
Log Message: ----------- Adding actions for shared workflows
Commit: c72dc0c39a0d2333c1da24e44f71866e806f2fa6 https://github.com/galaxyproject/galaxy/commit/c72dc0c39a0d2333c1da24e44f718... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-27 (Thu, 27 Apr 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css
Log Message: ----------- Changing html structure a bit
Commit: 89a32b77b3b9d9766244c0991f5497407ae1b9d2 https://github.com/galaxyproject/galaxy/commit/89a32b77b3b9d9766244c0991f549... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-28 (Fri, 28 Apr 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css
Log Message: ----------- Updating html and js structure and adding font awesome icons
Commit: a625901664a1ccde9988aa758a3dd8fca387ab47 https://github.com/galaxyproject/galaxy/commit/a625901664a1ccde9988aa758a3dd... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-28 (Fri, 28 Apr 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css
Log Message: ----------- Adding view action for shared workflow and fixing font-family for buttons
Commit: 5630a5c7eb4e25e14a6e6173c1a46d7ce0babde6 https://github.com/galaxyproject/galaxy/commit/5630a5c7eb4e25e14a6e6173c1a46... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-28 (Fri, 28 Apr 2017)
Changed paths: M .ci/flake8_docstrings_include_list.txt M .ci/flake8_lint_include_list.txt M .ci/py3_sources.txt M .travis.yml M CITATION M Makefile M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/galaxy.interactive_environments.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/citation/citation-view.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/form/form-parameters.js M client/galaxy/scripts/mvc/history/hda-li.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/library/library-folderlist-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/library/library-librarylist-view.js M client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js M client/galaxy/scripts/mvc/tag.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/ui/ui-color-picker.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/scripts/mvc/ui/ui-options.js M client/galaxy/scripts/mvc/ui/ui-select-content.js M client/galaxy/scripts/mvc/ui/ui-table.js A client/galaxy/scripts/mvc/user/user-custom-builds.js M client/galaxy/scripts/mvc/user/user-preferences.js M client/galaxy/scripts/mvc/workflow/workflow-forms.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/scripts/nls/fr/locale.js M client/galaxy/scripts/nls/locale.js M client/galaxy/scripts/viz/phyloviz.js M client/galaxy/style/less/ui.less M client/package.json M client/webpack.config.js A config/containers_conf.yml.sample M config/datatypes_conf.xml.sample M config/galaxy.ini.sample M config/openid_conf.xml.sample M config/plugins/interactive_environments/common/templates/ie.mako M config/plugins/interactive_environments/ethercalc/static/js/ethercalc.js M config/plugins/interactive_environments/ethercalc/templates/ethercalc.mako M config/plugins/interactive_environments/rstudio/config/allowed_images.yml.sample M config/plugins/interactive_environments/rstudio/config/rstudio.ini.sample M config/plugins/interactive_environments/rstudio/static/js/rstudio.js M config/plugins/interactive_environments/rstudio/templates/rstudio.mako M config/plugins/tours/core.galaxy_ui.yaml M config/plugins/tours/core.history.yaml A config/plugins/visualizations/charts/static/repository/build/biojs_phylocanvas.js A config/plugins/visualizations/charts/static/repository/build/biojs_phylocanvas.js.map M config/plugins/visualizations/charts/static/repository/build/cytoscape_viewer.js M config/plugins/visualizations/charts/static/repository/build/cytoscape_viewer.js.map M config/plugins/visualizations/charts/static/repository/build/registry.js M config/plugins/visualizations/charts/static/repository/build/registry.js.map M config/plugins/visualizations/charts/static/repository/build/registry.tmp.js A config/plugins/visualizations/charts/static/repository/plugins/biojs/phylocanvas/phylocanvas.js M config/plugins/visualizations/charts/static/repository/registry.json M config/plugins/visualizations/charts/static/repository/utilities/sifjson.js A config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/config.js A config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/logo.png A config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/wrapper.js M config/tool_conf.xml.sample M config/tool_destinations.yml.sample A doc/source/admin/special_topics/grafana.png M doc/source/admin/special_topics/index.rst A doc/source/admin/special_topics/performance_tracking.rst M lib/galaxy/app.py M lib/galaxy/config.py R lib/galaxy/container/__init__.py R lib/galaxy/container/docker_swarm.py A lib/galaxy/containers/__init__.py A lib/galaxy/containers/docker.py A lib/galaxy/containers/docker_decorators.py A lib/galaxy/containers/docker_model.py A lib/galaxy/containers/docker_swarm.py A lib/galaxy/containers/docker_swarm_manager.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/datatypes/text.py M lib/galaxy/dependencies/__init__.py M lib/galaxy/dependencies/conditional-requirements.txt M lib/galaxy/dependencies/dev-requirements.txt M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/exceptions/__init__.py M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/deferred/__init__.py M lib/galaxy/jobs/dynamic_tool_destination.py M lib/galaxy/jobs/handler.py M lib/galaxy/jobs/metrics/__init__.py M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/local.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/jobs/runners/tasks.py M lib/galaxy/managers/citations.py M lib/galaxy/managers/collections.py M lib/galaxy/managers/configuration.py M lib/galaxy/managers/hdas.py M lib/galaxy/managers/hdcas.py M lib/galaxy/managers/tags.py M lib/galaxy/managers/workflows.py M lib/galaxy/model/__init__.py M lib/galaxy/model/migrate/versions/0048_dataset_instance_state_column.py M lib/galaxy/model/migrate/versions/0062_user_openid_table.py M lib/galaxy/model/migrate/versions/0068_rename_sequencer_to_external_services.py M lib/galaxy/model/migrate/versions/0089_add_object_store_id_columns.py M lib/galaxy/model/migrate/versions/0103_add_tool_shed_repository_status_columns.py M lib/galaxy/model/migrate/versions/0106_add_missing_indexes.py M lib/galaxy/model/migrate/versions/0119_job_metrics.py M lib/galaxy/model/migrate/versions/0120_dataset_collections.py M lib/galaxy/model/migrate/versions/0122_grow_mysql_blobs.py M lib/galaxy/model/migrate/versions/0123_add_workflow_request_tables.py M lib/galaxy/model/migrate/versions/0124_job_state_history.py M lib/galaxy/model/migrate/versions/0125_workflow_step_tracking.py M lib/galaxy/model/migrate/versions/0126_password_reset.py M lib/galaxy/model/migrate/versions/0127_output_collection_adjustments.py M lib/galaxy/model/migrate/versions/0128_session_timeout.py M lib/galaxy/model/migrate/versions/0129_job_external_output_metadata_validity.py M lib/galaxy/model/migrate/versions/0131_subworkflow_and_input_parameter_modules.py M lib/galaxy/model/migrate/versions/0134_hda_set_deleted_if_purged.py M lib/galaxy/objectstore/azure_blob.py M lib/galaxy/queue_worker.py M lib/galaxy/queues.py M lib/galaxy/sample_tracking/external_service_types.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/actions/__init__.py M lib/galaxy/tools/actions/model_operations.py M lib/galaxy/tools/data_manager/manager.py M lib/galaxy/tools/evaluation.py M lib/galaxy/tools/execute.py A lib/galaxy/tools/filter_from_file.xml M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/validation.py M lib/galaxy/tools/parameters/wrapped.py A lib/galaxy/tools/relabel_from_file.xml M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/watcher.py M lib/galaxy/tools/verify/asserts/__init__.py M lib/galaxy/tools/wrappers.py M lib/galaxy/tours/__init__.py M lib/galaxy/util/__init__.py A lib/galaxy/util/handlers.py M lib/galaxy/util/submodules.py M lib/galaxy/visualization/genomes.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/base/controllers/admin.py M lib/galaxy/web/base/interactive_environments.py M lib/galaxy/web/framework/base.py A lib/galaxy/web/framework/middleware/graphite.py M lib/galaxy/web/framework/middleware/remoteuser.py M lib/galaxy/web/framework/webapp.py M lib/galaxy/web/proxy/__init__.py M lib/galaxy/web/proxy/js/package.json M lib/galaxy/webapps/galaxy/api/folder_contents.py M lib/galaxy/webapps/galaxy/api/histories.py M lib/galaxy/webapps/galaxy/api/history_contents.py M lib/galaxy/webapps/galaxy/api/lda_datasets.py M lib/galaxy/webapps/galaxy/api/library_contents.py M lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py M lib/galaxy/webapps/galaxy/api/users.py M lib/galaxy/webapps/galaxy/buildapp.py A lib/galaxy/webapps/galaxy/config_watchers.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/webapps/galaxy/controllers/interactive_environments.py M lib/galaxy/webapps/galaxy/controllers/library_common.py R lib/galaxy/webapps/galaxy/controllers/search.py M lib/galaxy/webapps/galaxy/controllers/user.py M lib/galaxy/webapps/galaxy/controllers/visualization.py M lib/galaxy/webapps/reports/config.py M lib/galaxy/webapps/tool_shed/config.py M lib/galaxy/webapps/tool_shed/model/migrate/versions/0024_password_reset.py M lib/galaxy/webapps/tool_shed/model/migrate/versions/0025_session_timeout.py M lib/galaxy/workflow/scheduling_manager.py M lib/tool_shed/capsule/capsule_manager.py M lib/tool_shed/galaxy_install/tool_migration_manager.py M lib/tool_shed/galaxy_install/tools/data_manager.py M lib/tool_shed/galaxy_install/tools/tool_panel_manager.py M lib/tool_shed/metadata/metadata_generator.py M lib/tool_shed/metadata/repository_metadata_manager.py M lib/tool_shed/repository_registry.py M lib/tool_shed/util/commit_util.py M lib/tool_shed/util/common_util.py M lib/tool_shed/util/readme_util.py M lib/tool_shed/util/repository_util.py M lib/tool_shed/util/workflow_util.py M lib/tool_shed/utility_containers/__init__.py R openid/google.xml M run_tests.sh A static/GruntFile.js A static/GruntFile.js.map M static/maps/galaxy.interactive_environments.js.map M static/maps/layout/menu.js.map M static/maps/mvc/citation/citation-view.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/dataset/dataset-li.js.map M static/maps/mvc/form/form-parameters.js.map M static/maps/mvc/history/hda-li.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/history/history-view-edit.js.map M static/maps/mvc/library/library-folderlist-view.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/maps/mvc/library/library-librarylist-view.js.map M static/maps/mvc/library/library-librarytoolbar-view.js.map M static/maps/mvc/tag.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/ui/ui-color-picker.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/mvc/ui/ui-options.js.map M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-table.js.map A static/maps/mvc/user/user-custom-builds.js.map M static/maps/mvc/user/user-preferences.js.map M static/maps/mvc/workflow/workflow-forms.js.map M static/maps/mvc/workflow/workflow.js.map M static/maps/nls/fr/locale.js.map M static/maps/nls/locale.js.map M static/maps/viz/phyloviz.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/galaxy.interactive_environments.js M static/scripts/layout/menu.js M static/scripts/mvc/citation/citation-view.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/form/form-parameters.js M static/scripts/mvc/history/hda-li.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/history-view-edit.js M static/scripts/mvc/library/library-folderlist-view.js M static/scripts/mvc/library/library-foldertoolbar-view.js M static/scripts/mvc/library/library-librarylist-view.js M static/scripts/mvc/library/library-librarytoolbar-view.js M static/scripts/mvc/tag.js M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/ui/ui-color-picker.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/ui/ui-options.js M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-table.js A static/scripts/mvc/user/user-custom-builds.js M static/scripts/mvc/user/user-preferences.js M static/scripts/mvc/workflow/workflow-forms.js M static/scripts/nls/fr/locale.js M static/scripts/nls/locale.js M static/scripts/viz/phyloviz.js M static/style/blue/base.css M templates/admin/tool_shed_repository/select_tool_panel_section.mako M templates/show_params.mako R templates/user/dbkeys.mako M templates/user/index.mako M templates/webapps/galaxy/admin/center.mako M templates/webapps/galaxy/data_manager/index.mako M templates/webapps/galaxy/galaxy.masthead.mako M templates/webapps/galaxy/workflow/display.mako M templates/webapps/tool_shed/base_panels.mako A test-data/filter_labels_1.txt A test-data/new_labels_1.txt A test-data/new_labels_2.txt A test-data/new_labels_bad_1.txt A test-data/new_labels_bad_2.txt M test/api/test_libraries.py M test/api/test_tools.py M test/api/test_workflows.py A test/functional/tools/identifier_multiple_in_conditional.xml A test/functional/tools/identifier_multiple_in_repeat.xml M test/functional/tools/samples_tool_conf.xml M test/galaxy_selenium/navigates_galaxy.py M test/integration/test_workflow_handler_configuration.py A test/integration/workflow_handler_configuration_workflow_scheduler_conf.xml M test/qunit/tests/form_tests.js M test/qunit/tests/ui_tests.js M test/unit/tools/test_toolbox.py M test/unit/tools/test_wrappers.py M tool-data/shared/ucsc/builds.txt.sample M tool-data/shared/ucsc/ucsc_build_sites.txt.sample M tools/filters/trimmer.py M tools/filters/trimmer.xml M tox.ini
Log Message: ----------- Merging with dev
Commit: 35adfeaea613a2d0eb56145e0111036fbdbafb47 https://github.com/galaxyproject/galaxy/commit/35adfeaea613a2d0eb56145e01110... Author: anuprulez anup.rulez@gmail.com Date: 2017-04-30 (Sun, 30 Apr 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css
Log Message: ----------- Adding table for showing all workflows
Commit: 70ce1541a5282300ec8e926d0946a76b4da8af69 https://github.com/galaxyproject/galaxy/commit/70ce1541a5282300ec8e926d0946a... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-01 (Mon, 01 May 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css
Log Message: ----------- Adding client side search for workflows
Commit: 490b11bfc5f4337315c16da8c3b5602d13986441 https://github.com/galaxyproject/galaxy/commit/490b11bfc5f4337315c16da8c3b56... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-01 (Mon, 01 May 2017)
Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/workflow/workflow.js M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/layout/menu.js.map M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/mvc/workflow/workflow.js
Log Message: ----------- Converting run mako to plain javascript and modifying menu for url
Commit: 0abf1a18c07cba79de2e0fb4f7efb80994b4986e https://github.com/galaxyproject/galaxy/commit/0abf1a18c07cba79de2e0fb4f7efb... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-05 (Fri, 05 May 2017)
Changed paths: M .ci/flake8_wrapper_docstrings.sh M .ci/jenkins/selenium/run_tests.sh M Makefile M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/dataset/dataset-model.js M client/galaxy/scripts/mvc/tag.js M client/galaxy/scripts/mvc/workflow/workflow-terminals.js M config/job_conf.xml.sample_advanced M config/plugins/interactive_environments/jupyter/config/allowed_images.yml.sample M config/plugins/interactive_environments/jupyter/config/jupyter.ini.sample M config/plugins/interactive_environments/jupyter/templates/jupyter.mako M config/plugins/interactive_environments/rstudio/config/rstudio.ini.sample M config/plugins/interactive_environments/rstudio/templates/rstudio.mako M lib/galaxy/app.py M lib/galaxy/auth/__init__.py M lib/galaxy/config.py M lib/galaxy/containers/__init__.py M lib/galaxy/containers/docker_swarm.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/dataproviders/hierarchy.py M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/datatypes/text.py M lib/galaxy/dependencies/dev-requirements.txt M lib/galaxy/jobs/runners/kubernetes.py M lib/galaxy/queue_worker.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/data/__init__.py M lib/galaxy/tools/data_manager/manager.py M lib/galaxy/tools/execute.py M lib/galaxy/tools/parser/xml.py M lib/galaxy/tools/search/__init__.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/cache.py M lib/galaxy/tools/toolbox/lineages/tool_shed.py M lib/galaxy/tools/toolbox/parser.py M lib/galaxy/tools/xsd/galaxy.xsd M lib/galaxy/util/__init__.py M lib/galaxy/util/plugin_config.py M lib/galaxy/version.py M lib/galaxy/web/base/interactive_environments.py M lib/galaxy/web/framework/middleware/remoteuser.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/galaxy/controllers/dataset.py M lib/tool_shed/galaxy_install/datatypes/custom_datatype_manager.py M lib/tool_shed/galaxy_install/install_manager.py M lib/tool_shed/galaxy_install/installed_repository_manager.py M lib/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py M lib/tool_shed/galaxy_install/tools/data_manager.py M lib/tool_shed/galaxy_install/tools/tool_panel_manager.py M lib/tool_shed/util/repository_util.py M lib/tool_shed/util/tool_dependency_util.py M lib/tool_shed/util/tool_util.py M run_tests.sh M scripts/bootstrap_history.py M setup.cfg M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/dataset/dataset-model.js.map M static/maps/mvc/tag.js.map M static/maps/mvc/workflow/workflow-terminals.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/dataset/dataset-model.js M static/scripts/mvc/tag.js M static/scripts/mvc/workflow/workflow-terminals.js M test/api/test_jobs.py M test/base/driver_util.py M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/framework.py M test/selenium_tests/test_workflow_run.py M test/unit/tools/test_toolbox.py M tools/data_source/upload.py M tox.ini
Log Message: ----------- Merging with dev
Commit: 63aeaa5e0300b0680633d7e78ab5f3859cb1a55c https://github.com/galaxyproject/galaxy/commit/63aeaa5e0300b0680633d7e78ab5f... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-05 (Fri, 05 May 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js
Log Message: ----------- Moving the action buttons text to their tooltips
Commit: a99605d04a46797a2b55746096b050d0514a4c39 https://github.com/galaxyproject/galaxy/commit/a99605d04a46797a2b55746096b05... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-09 (Tue, 09 May 2017)
Changed paths: M lib/galaxy/jobs/runners/condor.py M lib/galaxy/web/framework/middleware/graphite.py M test/api/test_workflows.py M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_history_sharing.py M test/selenium_tests/test_login.py M test/selenium_tests/test_registration.py M test/selenium_tests/test_tool_form.py
Log Message: ----------- Merge branch 'dev' of https://github.com/bgruening/galaxy into workflowexport_mako
Commit: 29ac63ac5675b0c514bbed392ac2ae1c804a8c58 https://github.com/galaxyproject/galaxy/commit/29ac63ac5675b0c514bbed392ac2a... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-09 (Tue, 09 May 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js R templates/webapps/galaxy/workflow/list.mako
Log Message: ----------- Deleting list.mako file and updating code for workflow run
Commit: c0decb71db316d6345af0cfcfa80b2902316bbf4 https://github.com/galaxyproject/galaxy/commit/c0decb71db316d6345af0cfcfa80b... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-09 (Tue, 09 May 2017)
Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/controllers/workflow.py
Log Message: ----------- Fixing pylint comments for build failure
Commit: 822abebd9e09457c544617c0eca583a8ff5f9821 https://github.com/galaxyproject/galaxy/commit/822abebd9e09457c544617c0eca58... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-09 (Tue, 09 May 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M lib/galaxy/webapps/galaxy/api/workflows.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js
Log Message: ----------- Fixing PR review comments
Commit: c825f45590739b2eca816106782238643fc4e3bd https://github.com/galaxyproject/galaxy/commit/c825f45590739b2eca81610678223... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-10 (Wed, 10 May 2017)
Changed paths: M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map
Log Message: ----------- Merging the static files
Commit: d5d10f0ef0994906a434f48bbdf86437547ce526 https://github.com/galaxyproject/galaxy/commit/d5d10f0ef0994906a434f48bbdf86... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-10 (Wed, 10 May 2017)
Changed paths: M client/galaxy/scripts/layout/menu.js A client/galaxy/scripts/nls/de/locale.js A client/galaxy/scripts/nls/es/locale.js M client/galaxy/scripts/nls/fr/locale.js M client/galaxy/scripts/nls/locale.js M static/maps/layout/menu.js.map A static/maps/nls/de/locale.js.map A static/maps/nls/es/locale.js.map M static/maps/nls/fr/locale.js.map M static/maps/nls/locale.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js A static/scripts/nls/de/locale.js A static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/locale.js
Log Message: ----------- Merging with dev and resolving conflicts
Commit: e1d197b27e9a43c8b00a37160f7db54e44566d9c https://github.com/galaxyproject/galaxy/commit/e1d197b27e9a43c8b00a37160f7db... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-10 (Wed, 10 May 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M lib/galaxy/webapps/galaxy/api/workflows.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js
Log Message: ----------- Fixing PR review comments
Commit: b91729eaf637ff2741913f5ec3de1679fb65ee09 https://github.com/galaxyproject/galaxy/commit/b91729eaf637ff2741913f5ec3de1... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M client/galaxy/scripts/apps/tool-panel.js M client/galaxy/scripts/mvc/workflow/workflow.js M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js
Log Message: ----------- Fixing review comments for proxy_prefix and 'All workflows' link in the tool panel
Commit: b6bf961cd7793c3efdbd3cb5252cda198d684d6d https://github.com/galaxyproject/galaxy/commit/b6bf961cd7793c3efdbd3cb5252cd... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py
Log Message: ----------- Fixing for prefix url for actions in workflow controller
Commit: 004f843ba428c7b73f8ec035d1f930a5819b3069 https://github.com/galaxyproject/galaxy/commit/004f843ba428c7b73f8ec035d1f93... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py R templates/webapps/galaxy/workflow/list_for_run.mako
Log Message: ----------- Removing list_for_run.mako and its corresponding method in workflow controller
Commit: c76c588ed1c2e336f65b9b930a08cae7fb8f2957 https://github.com/galaxyproject/galaxy/commit/c76c588ed1c2e336f65b9b930a08c... Author: John Chilton jmchilton@gmail.com Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_workflow_management.py
Log Message: ----------- Fix Selenium test cases for JavaScript-izing workflow management.
Commit: 7374558ca576f50b9225e97c058d983479df57f2 https://github.com/galaxyproject/galaxy/commit/7374558ca576f50b9225e97c058d9... Author: Björn Grüning bjoern@gruenings.eu Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_workflow_management.py
Log Message: ----------- Merge pull request #34 from jmchilton/workflowexport_mako_test_fixes
Fix Selenium test cases for JavaScript-izing workflow management.
Commit: 2e34b6c3e38e84f507297d45bcbb9a50e3748755 https://github.com/galaxyproject/galaxy/commit/2e34b6c3e38e84f507297d45bcbb9... Author: Dannon Baker dannon.baker@gmail.com Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M client/galaxy/scripts/apps/analysis.js M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map
Log Message: ----------- Fix require inclusion scoping in analysis.js
Commit: 6f89baba42ba629ad29b144706fb8475197c3b8b https://github.com/galaxyproject/galaxy/commit/6f89baba42ba629ad29b144706fb8... Author: Björn Grüning bjoern@gruenings.eu Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M client/galaxy/scripts/apps/analysis.js M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map
Log Message: ----------- Merge pull request #35 from dannon/workflowexport_mako
Fix require inclusion scoping in analysis.js
Commit: a72035b4972f20637290a0cf94088e0199accd6b https://github.com/galaxyproject/galaxy/commit/a72035b4972f20637290a0cf94088... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js
Log Message: ----------- Removing unused imports in workflow main view
Commit: e74653feace21206686905413943c86cae68eb8a https://github.com/galaxyproject/galaxy/commit/e74653feace21206686905413943c... Author: anuprulez anup.rulez@gmail.com Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M client/galaxy/scripts/nls/fr/locale.js M static/maps/nls/fr/locale.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/nls/fr/locale.js M test/selenium_tests/framework.py
Log Message: ----------- Merging with dev
Commit: 2f6d9590feecf3a58e5d47f4eccbfa4f3aa209c7 https://github.com/galaxyproject/galaxy/commit/2f6d9590feecf3a58e5d47f4eccbf... Author: Dannon Baker dannon.baker@gmail.com Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/tool-panel.js M client/galaxy/scripts/layout/menu.js A client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/layout/menu.js.map A static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js A static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css R templates/webapps/galaxy/workflow/list.mako R templates/webapps/galaxy/workflow/list_for_run.mako M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_workflow_management.py
Log Message: ----------- Merge pull request #4047 from bgruening/workflowexport_mako
New Workflow Management Screen UI using JavaScript
Compare: https://github.com/galaxyproject/galaxy/compare/163de025a20a...2f6d9590feec