Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 355b48c361e68a7d9fbe9fe86de7aa2313e5d608 https://github.com/galaxyproject/galaxy/commit/355b48c361e68a7d9fbe9fe86de7a... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-12-10 (Mon, 10 Dec 2018) Changed paths: M lib/galaxy/app.py M lib/galaxy/config.py M lib/galaxy/exceptions/__init__.py M lib/galaxy/exceptions/error_codes.json M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/handler.py M lib/galaxy/jobs/manager.py M lib/galaxy/managers/datasets.py M lib/galaxy/model/__init__.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/actions/__init__.py M lib/galaxy/tools/actions/history_imp_exp.py M lib/galaxy/tools/actions/metadata.py M lib/galaxy/tools/actions/upload_common.py M lib/galaxy/util/handlers.py M lib/galaxy/web/stack/__init__.py M lib/galaxy/web/stack/transport.py M lib/galaxy/webapps/galaxy/api/jobs.py M lib/galaxy/webapps/galaxy/config_schema.yml M lib/galaxy/webapps/galaxy/controllers/admin.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/workflow/scheduling_manager.py M test/unit/jobs/test_job_configuration.py M test/unit/tools/test_actions.py M test/unit/unittest_utils/galaxy_mock.py Log Message: ----------- Make handler assignment configurable in preparation for new assignment methods. Commit: 10c45705bca081c336214b08fcc84d209b19b345 https://github.com/galaxyproject/galaxy/commit/10c45705bca081c336214b08fcc84... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-12-10 (Mon, 10 Dec 2018) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/util/facts.py M lib/galaxy/util/handlers.py M lib/galaxy/web/stack/__init__.py M lib/galaxy/workflow/scheduling_manager.py A test/unit/jobs/handler_template_job_conf.xml M test/unit/jobs/test_job_configuration.py Log Message: ----------- Unit tests and fixes for bugs discovered while testing. Commit: 1fb8203a0c1f6f941e0b13fa6357ec04ea677ffb https://github.com/galaxyproject/galaxy/commit/1fb8203a0c1f6f941e0b13fa6357e... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-12-10 (Mon, 10 Dec 2018) Changed paths: M config/galaxy.yml.sample M config/job_conf.xml.sample_advanced M config/workflow_schedulers_conf.xml.sample M doc/source/admin/galaxy_options.rst M doc/source/admin/jobs.md M doc/source/admin/scaling.md M lib/galaxy/jobs/manager.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Handler assignment documentation. Commit: 40f776afde460759b5d682c19ef698fefd2d4388 https://github.com/galaxyproject/galaxy/commit/40f776afde460759b5d682c19ef69... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-12-11 (Tue, 11 Dec 2018) Changed paths: M lib/galaxy/jobs/manager.py M lib/galaxy/util/handlers.py M test/unit/jobs/handler_template_job_conf.xml M test/unit/jobs/test_job_configuration.py Log Message: ----------- Fix tests broken with changes to job_conf.xml.sample_advanced, fix the broken direct handler assignment method, document the new handler assignment methods for future method authors. Ensure that enqueue does its best to return a handler (if known). Commit: 4a006335ac4ac84a69b5cb1f851e3e63400443ae https://github.com/galaxyproject/galaxy/commit/4a006335ac4ac84a69b5cb1f851e3... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-12-11 (Tue, 11 Dec 2018) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Fix default job config (no job_conf.xml). Commit: e9aec176fac8bb3681ea533be6178ffd43c3bf4d https://github.com/galaxyproject/galaxy/commit/e9aec176fac8bb3681ea533be6178... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-12-11 (Tue, 11 Dec 2018) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/workflow/scheduling_manager.py Log Message: ----------- Fixes for workflow scheduling tests. Commit: 7bed9f03180826f7c7f99b12b08bcb265867217b https://github.com/galaxyproject/galaxy/commit/7bed9f03180826f7c7f99b12b08bc... Author: John Chilton <jmchilton@gmail.com> Date: 2018-12-12 (Wed, 12 Dec 2018) Changed paths: M config/galaxy.yml.sample M config/job_conf.xml.sample_advanced M config/workflow_schedulers_conf.xml.sample M doc/source/admin/galaxy_options.rst M doc/source/admin/jobs.md M doc/source/admin/scaling.md M lib/galaxy/app.py M lib/galaxy/config.py M lib/galaxy/exceptions/__init__.py M lib/galaxy/exceptions/error_codes.json M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/handler.py M lib/galaxy/jobs/manager.py M lib/galaxy/managers/datasets.py M lib/galaxy/model/__init__.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/actions/__init__.py M lib/galaxy/tools/actions/history_imp_exp.py M lib/galaxy/tools/actions/metadata.py M lib/galaxy/tools/actions/upload_common.py M lib/galaxy/util/facts.py M lib/galaxy/util/handlers.py M lib/galaxy/web/stack/__init__.py M lib/galaxy/web/stack/transport.py M lib/galaxy/webapps/galaxy/api/jobs.py M lib/galaxy/webapps/galaxy/config_schema.yml M lib/galaxy/webapps/galaxy/controllers/admin.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/workflow/scheduling_manager.py A test/unit/jobs/handler_template_job_conf.xml M test/unit/jobs/test_job_configuration.py M test/unit/tools/test_actions.py M test/unit/unittest_utils/galaxy_mock.py Log Message: ----------- Merge pull request #7091 from natefoo/handler-assignment-fixes Configurable job/workflow handler assignment methods Compare: https://github.com/galaxyproject/galaxy/compare/1fd3fccb216b...7bed9f031808 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.