1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/22788c1262a2/ changeset: 22788c1262a2 user: jgoecks date: 2013-01-28 22:36:02 summary: Language improvements for tophat wrappers. affected #: 2 files
diff -r dfcc7e9469f81116ae01eb3aebf57b2a3d22ca82 -r 22788c1262a2756a50e03d92f8ee14705d019b98 tools/ngs_rna/tophat2_wrapper.xml --- a/tools/ngs_rna/tophat2_wrapper.xml +++ b/tools/ngs_rna/tophat2_wrapper.xml @@ -144,15 +144,15 @@ </when></conditional><conditional name="refGenomeSource"> - <param name="genomeSource" type="select" label="Will you select a reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options"> - <option value="indexed">Use a built-in index</option> - <option value="history">Use one from the history</option> + <param name="genomeSource" type="select" label="Use a built in reference genome or own from your history" help="Built-in genomes were created using default options"> + <option value="indexed" selected="True">Use a built-in genome</option> + <option value="history">Use a genome from history</option></param><when value="indexed"><param name="index" type="select" label="Select a reference genome" help="If your genome of interest is not listed, contact the Galaxy team"><options from_data_table="tophat2_indexes"><filter type="sort_by" column="2"/> - <validator type="no_options" message="No indexes are available for the selected input dataset"/> + <validator type="no_options" message="No genomes are available for the selected input dataset"/></options></param></when>
diff -r dfcc7e9469f81116ae01eb3aebf57b2a3d22ca82 -r 22788c1262a2756a50e03d92f8ee14705d019b98 tools/ngs_rna/tophat_wrapper.xml --- a/tools/ngs_rna/tophat_wrapper.xml +++ b/tools/ngs_rna/tophat_wrapper.xml @@ -152,15 +152,15 @@ <inputs><param format="fastqsanger" name="input1" type="data" label="RNA-Seq FASTQ file" help="Nucleotide-space: Must have Sanger-scaled quality values with ASCII offset 33" /><conditional name="refGenomeSource"> - <param name="genomeSource" type="select" label="Will you select a reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options"> - <option value="indexed">Use a built-in index</option> - <option value="history">Use one from the history</option> + <param name="genomeSource" type="select" label="Use a built in reference genome or own from your history" help="Built-ins genomes were created using default options"> + <option value="indexed" selected="True">Use a built-in genome</option> + <option value="history">Use a genome from history</option></param><when value="indexed"><param name="index" type="select" label="Select a reference genome" help="If your genome of interest is not listed, contact the Galaxy team"><options from_data_table="tophat_indexes"><filter type="sort_by" column="2"/> - <validator type="no_options" message="No indexes are available for the selected input dataset"/> + <validator type="no_options" message="No genomes are available for the selected input dataset"/></options></param></when>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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