[galaxy-commits] [galaxyproject/galaxy] bc3ecb: flake8 test/tool_shed/ .

26 Aug 2015

      Branch: refs/heads/dev
  Home:   https://github.com/galaxyproject/galaxy
  Commit: bc3ecbbae8d0161dec98d0566ad8c9eb3dfcfd97
      https://github.com/galaxyproject/galaxy/commit/bc3ecbbae8d0161dec98d0566ad8c...
  Author: Nicola Soranzo <nicola.soranzo@tgac.ac.uk>
  Date:   2015-08-26 (Wed, 26 Aug 2015)

  Changed paths:
    M .ci/flake8_blacklist.txt
    M test/tool_shed/base/twilltestcase.py
    M test/tool_shed/functional/test_0000_basic_repository_features.py
    M test/tool_shed/functional/test_0010_repository_with_tool_dependencies.py
    M test/tool_shed/functional/test_0020_basic_repository_dependencies.py
    M test/tool_shed/functional/test_0030_repository_dependency_revisions.py
    M test/tool_shed/functional/test_0040_repository_circular_dependencies.py
    M test/tool_shed/functional/test_0050_circular_dependencies_4_levels.py
    M test/tool_shed/functional/test_0060_workflows.py
    M test/tool_shed/functional/test_0070_invalid_tool.py
    M test/tool_shed/functional/test_0080_advanced_circular_dependencies.py
    M test/tool_shed/functional/test_0090_tool_search.py
    M test/tool_shed/functional/test_0100_complex_repository_dependencies.py
    M test/tool_shed/functional/test_0110_invalid_simple_repository_dependencies.py
    M test/tool_shed/functional/test_0120_simple_repository_dependency_multiple_owners.py
    M test/tool_shed/functional/test_0130_datatype_converters.py
    M test/tool_shed/functional/test_0140_tool_help_images.py
    M test/tool_shed/functional/test_0150_prior_installation_required.py
    M test/tool_shed/functional/test_0160_circular_prior_installation_required.py
    M test/tool_shed/functional/test_0170_complex_prior_installation_required.py
    M test/tool_shed/functional/test_0300_reset_all_metadata.py
    M test/tool_shed/functional/test_0310_hg_push_from_api.py
    M test/tool_shed/functional/test_0400_repository_component_reviews.py
    M test/tool_shed/functional/test_0410_repository_component_review_access_control.py
    M test/tool_shed/functional/test_0420_citable_urls_for_repositories.py
    M test/tool_shed/functional/test_0430_browse_utilities.py
    M test/tool_shed/functional/test_0440_deleting_dependency_definitions.py
    M test/tool_shed/functional/test_0450_skip_tool_tests.py
    M test/tool_shed/functional/test_0460_upload_to_repository.py
    M test/tool_shed/functional/test_0470_tool_dependency_repository_type.py
    M test/tool_shed/functional/test_0480_tool_dependency_xml_verification.py
    M test/tool_shed/functional/test_0490_export_import_repositories.py
    M test/tool_shed/functional/test_0500_export_repository_simple_dependency.py
    M test/tool_shed/functional/test_0510_export_import_repository_complex_dependencies.py
    M test/tool_shed/functional/test_0520_import_export_circular_dependencies.py
    M test/tool_shed/functional/test_0530_repository_admin_feature.py
    M test/tool_shed/functional/test_1000_install_basic_repository.py
    M test/tool_shed/functional/test_1010_install_repository_with_tool_dependencies.py
    M test/tool_shed/functional/test_1020_install_repository_with_repository_dependencies.py
    M test/tool_shed/functional/test_1030_install_repository_with_dependency_revisions.py
    M test/tool_shed/functional/test_1040_install_repository_basic_circular_dependencies.py
    M test/tool_shed/functional/test_1050_circular_dependencies_4_levels.py
    M test/tool_shed/functional/test_1060_install_repository_with_workflow.py
    M test/tool_shed/functional/test_1070_invalid_tool.py
    M test/tool_shed/functional/test_1080_advanced_circular_dependency_installation.py
    M test/tool_shed/functional/test_1085_repository_dependency_handling.py
    M test/tool_shed/functional/test_1087_install_updated_repository_dependencies.py
    M test/tool_shed/functional/test_1090_install_tool_from_tool_search.py
    M test/tool_shed/functional/test_1100_install_repository_with_complex_dependencies.py
    M test/tool_shed/functional/test_1110_install_repository_with_invalid_repository_dependency.py
    M test/tool_shed/functional/test_1120_simple_repository_dependency_multiple_owners.py
    M test/tool_shed/functional/test_1130_datatype_converters.py
    M test/tool_shed/functional/test_1140_tool_help_images.py
    M test/tool_shed/functional/test_1150_prior_installation_required.py
    M test/tool_shed/functional/test_1160_circular_prior_installation_required.py
    M test/tool_shed/functional/test_1170_complex_prior_installation_required.py
    M test/tool_shed/functional/test_1200_uninstall_and_reinstall_basic_repository.py
    M test/tool_shed/functional/test_1210_uninstall_reinstall_repository_with_tool_dependencies.py
    M test/tool_shed/functional/test_1220_uninstall_reinstall_repository_with_repository_dependencies.py
    M test/tool_shed/functional/test_1230_uninstall_reinstall_repository_with_dependency_revisions.py
    M test/tool_shed/functional/test_1300_reset_all_metadata.py
    M test/tool_shed/functional/test_1400_review_migration_stages.py
    M test/tool_shed/functional/test_1410_update_manager.py
    M test/tool_shed/functional/test_1420_tool_dependency_environment_inheritance.py
    M test/tool_shed/functional/test_1430_repair_installed_repository.py
    M test/tool_shed/functional/test_1440_missing_env_sh_files.py
    M test/tool_shed/functional/test_1450_installing_datatypes_sniffers.py
    M test/tool_shed/functional/test_1460_data_managers.py
    M test/tool_shed/functional/test_1470_updating_installed_repositories.py
    M test/tool_shed/functional_tests.py

  Log Message:
  -----------
  flake8 test/tool_shed/ .

  Commit: 5701934e6520713913dced403992551eae7c6ef8
      https://github.com/galaxyproject/galaxy/commit/5701934e6520713913dced4039925...
  Author: Nicola Soranzo <nicola.soranzo@tgac.ac.uk>
  Date:   2015-08-26 (Wed, 26 Aug 2015)

  Changed paths:
    M test/tool_shed/functional/test_1170_complex_prior_installation_required.py

  Log Message:
  -----------
  Fix broken test_0025_install_matplotlib_repository test.

  Commit: 11870a96f4e73838941e29c9ae2c0f721c8c072d
      https://github.com/galaxyproject/galaxy/commit/11870a96f4e73838941e29c9ae2c0...
  Author: Nicola Soranzo <nicola.soranzo@tgac.ac.uk>
  Date:   2015-08-26 (Wed, 26 Aug 2015)

  Changed paths:
    M test/tool_shed/test_data/proteomics_datatypes/proteomics_datatypes.tar

  Log Message:
  -----------
  Remove from proteomics_datatypes.tar test data the datatypes that have been added to Galaxy datatypes.

Fix tests in test/tool_shed/functional/test_1450_installing_datatypes_sniffers.py .

  Commit: 6ca86b5586dea7ae88249cf66183bb44a1c9e96a
      https://github.com/galaxyproject/galaxy/commit/6ca86b5586dea7ae88249cf66183b...
  Author: Nicola Soranzo <nicola.soranzo@tgac.ac.uk>
  Date:   2015-08-26 (Wed, 26 Aug 2015)

  Changed paths:
    M lib/galaxy/webapps/tool_shed/controllers/repository.py

  Log Message:
  -----------
  Fix regression introduced in 0f2e2152ee17532488a8231cf1220ed9ddddb3aa .

  Commit: fc2861ce78204f52ec917ea73695d2b090f7b945
      https://github.com/galaxyproject/galaxy/commit/fc2861ce78204f52ec917ea73695d...
  Author: Nicola Soranzo <nicola.soranzo@tgac.ac.uk>
  Date:   2015-08-26 (Wed, 26 Aug 2015)

  Changed paths:
    M test/tool_shed/base/twilltestcase.py

  Log Message:
  -----------
  Fix 3 failing functional tests in test/tool_shed/ .

  Commit: b0f2eaec031217b8ed3c018bded274f6fbc3b155
      https://github.com/galaxyproject/galaxy/commit/b0f2eaec031217b8ed3c018bded27...
  Author: Martin Cech <cech.marten@gmail.com>
  Date:   2015-08-26 (Wed, 26 Aug 2015)

  Changed paths:
    M .ci/flake8_blacklist.txt
    M lib/galaxy/webapps/tool_shed/controllers/repository.py
    M test/tool_shed/base/twilltestcase.py
    M test/tool_shed/functional/test_0000_basic_repository_features.py
    M test/tool_shed/functional/test_0010_repository_with_tool_dependencies.py
    M test/tool_shed/functional/test_0020_basic_repository_dependencies.py
    M test/tool_shed/functional/test_0030_repository_dependency_revisions.py
    M test/tool_shed/functional/test_0040_repository_circular_dependencies.py
    M test/tool_shed/functional/test_0050_circular_dependencies_4_levels.py
    M test/tool_shed/functional/test_0060_workflows.py
    M test/tool_shed/functional/test_0070_invalid_tool.py
    M test/tool_shed/functional/test_0080_advanced_circular_dependencies.py
    M test/tool_shed/functional/test_0090_tool_search.py
    M test/tool_shed/functional/test_0100_complex_repository_dependencies.py
    M test/tool_shed/functional/test_0110_invalid_simple_repository_dependencies.py
    M test/tool_shed/functional/test_0120_simple_repository_dependency_multiple_owners.py
    M test/tool_shed/functional/test_0130_datatype_converters.py
    M test/tool_shed/functional/test_0140_tool_help_images.py
    M test/tool_shed/functional/test_0150_prior_installation_required.py
    M test/tool_shed/functional/test_0160_circular_prior_installation_required.py
    M test/tool_shed/functional/test_0170_complex_prior_installation_required.py
    M test/tool_shed/functional/test_0300_reset_all_metadata.py
    M test/tool_shed/functional/test_0310_hg_push_from_api.py
    M test/tool_shed/functional/test_0400_repository_component_reviews.py
    M test/tool_shed/functional/test_0410_repository_component_review_access_control.py
    M test/tool_shed/functional/test_0420_citable_urls_for_repositories.py
    M test/tool_shed/functional/test_0430_browse_utilities.py
    M test/tool_shed/functional/test_0440_deleting_dependency_definitions.py
    M test/tool_shed/functional/test_0450_skip_tool_tests.py
    M test/tool_shed/functional/test_0460_upload_to_repository.py
    M test/tool_shed/functional/test_0470_tool_dependency_repository_type.py
    M test/tool_shed/functional/test_0480_tool_dependency_xml_verification.py
    M test/tool_shed/functional/test_0490_export_import_repositories.py
    M test/tool_shed/functional/test_0500_export_repository_simple_dependency.py
    M test/tool_shed/functional/test_0510_export_import_repository_complex_dependencies.py
    M test/tool_shed/functional/test_0520_import_export_circular_dependencies.py
    M test/tool_shed/functional/test_0530_repository_admin_feature.py
    M test/tool_shed/functional/test_1000_install_basic_repository.py
    M test/tool_shed/functional/test_1010_install_repository_with_tool_dependencies.py
    M test/tool_shed/functional/test_1020_install_repository_with_repository_dependencies.py
    M test/tool_shed/functional/test_1030_install_repository_with_dependency_revisions.py
    M test/tool_shed/functional/test_1040_install_repository_basic_circular_dependencies.py
    M test/tool_shed/functional/test_1050_circular_dependencies_4_levels.py
    M test/tool_shed/functional/test_1060_install_repository_with_workflow.py
    M test/tool_shed/functional/test_1070_invalid_tool.py
    M test/tool_shed/functional/test_1080_advanced_circular_dependency_installation.py
    M test/tool_shed/functional/test_1085_repository_dependency_handling.py
    M test/tool_shed/functional/test_1087_install_updated_repository_dependencies.py
    M test/tool_shed/functional/test_1090_install_tool_from_tool_search.py
    M test/tool_shed/functional/test_1100_install_repository_with_complex_dependencies.py
    M test/tool_shed/functional/test_1110_install_repository_with_invalid_repository_dependency.py
    M test/tool_shed/functional/test_1120_simple_repository_dependency_multiple_owners.py
    M test/tool_shed/functional/test_1130_datatype_converters.py
    M test/tool_shed/functional/test_1140_tool_help_images.py
    M test/tool_shed/functional/test_1150_prior_installation_required.py
    M test/tool_shed/functional/test_1160_circular_prior_installation_required.py
    M test/tool_shed/functional/test_1170_complex_prior_installation_required.py
    M test/tool_shed/functional/test_1200_uninstall_and_reinstall_basic_repository.py
    M test/tool_shed/functional/test_1210_uninstall_reinstall_repository_with_tool_dependencies.py
    M test/tool_shed/functional/test_1220_uninstall_reinstall_repository_with_repository_dependencies.py
    M test/tool_shed/functional/test_1230_uninstall_reinstall_repository_with_dependency_revisions.py
    M test/tool_shed/functional/test_1300_reset_all_metadata.py
    M test/tool_shed/functional/test_1400_review_migration_stages.py
    M test/tool_shed/functional/test_1410_update_manager.py
    M test/tool_shed/functional/test_1420_tool_dependency_environment_inheritance.py
    M test/tool_shed/functional/test_1430_repair_installed_repository.py
    M test/tool_shed/functional/test_1440_missing_env_sh_files.py
    M test/tool_shed/functional/test_1450_installing_datatypes_sniffers.py
    M test/tool_shed/functional/test_1460_data_managers.py
    M test/tool_shed/functional/test_1470_updating_installed_repositories.py
    M test/tool_shed/functional_tests.py
    M test/tool_shed/test_data/proteomics_datatypes/proteomics_datatypes.tar

  Log Message:
  -----------
  Merge pull request #650 from nsoranzo/dev

flake8 test/tool_shed/ . Fix 8 Tool Shed functional tests.

Compare: https://github.com/galaxyproject/galaxy/compare/4dc2f8ceeda6...b0f2eaec0312

[galaxy-commits] [galaxyproject/galaxy] bc3ecb: flake8 test/tool_shed/ .

GitHub