Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 7a1fbd37e9fb262432daed6eefc4e9c54ceff406 https://github.com/galaxyproject/galaxy/commit/7a1fbd37e9fb262432daed6eefc4e... Author: John Chilton <jmchilton@gmail.com> Date: 2017-08-12 (Sat, 12 Aug 2017) Changed paths: M lib/galaxy/util/checkers.py Log Message: ----------- Fix bug in upload HTML checker. If a chunk was passed into the check_html function - e.g. it was read from a compressed file - it would search through each character in the string for certain HTML content instead of each line in the string. Commit: 59aa11864a795861484133dfc85212bf9150cf4a https://github.com/galaxyproject/galaxy/commit/59aa11864a795861484133dfc8521... Author: John Chilton <jmchilton@gmail.com> Date: 2017-08-12 (Sat, 12 Aug 2017) Changed paths: M lib/galaxy/config.py M lib/galaxy/tools/actions/upload_common.py M lib/galaxy/util/checkers.py M tools/data_source/upload.py Log Message: ----------- Add configuration option to disable upload content checking. Commit: 53b0b25456c170990ad3345021aab16f68e6e185 https://github.com/galaxyproject/galaxy/commit/53b0b25456c170990ad3345021aab... Author: John Chilton <jmchilton@gmail.com> Date: 2017-08-12 (Sat, 12 Aug 2017) Changed paths: M test/base/populators.py Log Message: ----------- Better error reporting in test/base/populators.py. Commit: bee6af1e4117e7ff6f7caac0d9c84253ec1c4882 https://github.com/galaxyproject/galaxy/commit/bee6af1e4117e7ff6f7caac0d9c84... Author: John Chilton <jmchilton@gmail.com> Date: 2017-08-12 (Sat, 12 Aug 2017) Changed paths: M test/base/api.py Log Message: ----------- Allow API tests to work with admin users (not just admin keys). Commit: fec1eab82dc6dea2d03711127ed08b3038ad5bf1 https://github.com/galaxyproject/galaxy/commit/fec1eab82dc6dea2d03711127ed08... Author: John Chilton <jmchilton@gmail.com> Date: 2017-08-12 (Sat, 12 Aug 2017) Changed paths: M lib/galaxy/tools/actions/upload_common.py M lib/galaxy/tools/parameters/grouping.py M test/base/populators.py M tools/data_source/upload.py M tools/data_source/upload.xml Log Message: ----------- Add ability to arbitrarily not decompress files on upload via API. Commit: 06ca789f92ad2f4dfaffc36d3fa0bafb3c74920d https://github.com/galaxyproject/galaxy/commit/06ca789f92ad2f4dfaffc36d3fa0b... Author: John Chilton <jmchilton@gmail.com> Date: 2017-08-12 (Sat, 12 Aug 2017) Changed paths: A test-data/1.sam.gz A test-data/bad.html.gz A test-data/random-file M test/functional/tools/sample_datatypes_conf.xml A test/integration/test_upload_configuration_options.py Log Message: ----------- Configuration tests for the last few upload enhancements. Commit: f849c7e6feafabf905653bd008fde23dc1413a85 https://github.com/galaxyproject/galaxy/commit/f849c7e6feafabf905653bd008fde... Author: Björn Grüning <bjoern@gruenings.eu> Date: 2017-08-14 (Mon, 14 Aug 2017) Changed paths: M lib/galaxy/config.py M lib/galaxy/tools/actions/upload_common.py M lib/galaxy/tools/parameters/grouping.py M lib/galaxy/util/checkers.py A test-data/1.sam.gz A test-data/bad.html.gz A test-data/random-file M test/base/api.py M test/base/populators.py M test/functional/tools/sample_datatypes_conf.xml A test/integration/test_upload_configuration_options.py M tools/data_source/upload.py M tools/data_source/upload.xml Log Message: ----------- Merge pull request #4417 from jmchilton/upload_enhance Fixes and enhancements for the upload API Compare: https://github.com/galaxyproject/galaxy/compare/fc861cdf38d1...f849c7e6feaf