Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3f38e81cb7bb2246cc3c79dd10dc5992685f1337 https://github.com/galaxyproject/galaxy/commit/3f38e81cb7bb2246cc3c79dd10dc5... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M lib/galaxy/queue_worker.py M lib/galaxy/webapps/galaxy/config_watchers.py A test/integration/test_data_manager_table_reload.py Log Message: ----------- Update tables to watch when installing new data manager Commit: 843d2e420011cde58e3742cacc58d3c6f1ab6255 https://github.com/galaxyproject/galaxy/commit/843d2e420011cde58e3742cacc58d... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-09-14 (Thu, 14 Sep 2017) Changed paths: M lib/galaxy/tools/toolbox/base.py Log Message: ----------- Assign correct guids to DM tools after TS install Commit: d06fb09f4bb93906ef36faf0c947eb5625c457e9 https://github.com/galaxyproject/galaxy/commit/d06fb09f4bb93906ef36faf0c947e... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-09-15 (Fri, 15 Sep 2017) Changed paths: M lib/galaxy/tools/parameters/dynamic_options.py M lib/tool_shed/tools/tool_validator.py A test/integration/tool_sheds_conf.xml Log Message: ----------- Make DynamicOptions use updated tool_data_tables Otherwise a restart would be necessary after adding items to a data table. Commit: 2e6654b18bd2a38f39d202e35ee5d24562122b3a https://github.com/galaxyproject/galaxy/commit/2e6654b18bd2a38f39d202e35ee5d... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-09-15 (Fri, 15 Sep 2017) Changed paths: M lib/galaxy/tools/parameters/dynamic_options.py M test/integration/test_data_manager_table_reload.py Log Message: ----------- Linting fixes Commit: a4c4d826dca64b2d85bd8c38cccf9cf6f7762008 https://github.com/galaxyproject/galaxy/commit/a4c4d826dca64b2d85bd8c38cccf9... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-09-15 (Fri, 15 Sep 2017) Changed paths: M lib/galaxy/dependencies/__init__.py M lib/galaxy/dependencies/conditional-requirements.txt Log Message: ----------- Make watchdog a conditional dependency Commit: 4b403008270bf26e29f037ae902526641dea8e3e https://github.com/galaxyproject/galaxy/commit/4b403008270bf26e29f037ae90252... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-09-15 (Fri, 15 Sep 2017) Changed paths: M lib/galaxy/config.py M lib/tool_shed/tool_shed_registry.py Log Message: ----------- Remove unused root_dir argument Commit: 2d844a86e7b1534c4211d4a3de7de6e367b5fd44 https://github.com/galaxyproject/galaxy/commit/2d844a86e7b1534c4211d4a3de7de... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-09-15 (Fri, 15 Sep 2017) Changed paths: M lib/galaxy/dependencies/dev-requirements.txt Log Message: ----------- Add watchdog to dev-requirements so it is available for integration tests Commit: 9d3af63660461c8738782f0a3903e8112e1e5c93 https://github.com/galaxyproject/galaxy/commit/9d3af63660461c8738782f0a3903e... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-09-16 (Sat, 16 Sep 2017) Changed paths: M test/integration/test_data_manager_table_reload.py Log Message: ----------- Skip DataManagerIntegrationTestCase when watchdog unavailable Commit: 706434da41e70922f3d723b8cc390f3d0e5d984a https://github.com/galaxyproject/galaxy/commit/706434da41e70922f3d723b8cc390... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-09-16 (Sat, 16 Sep 2017) Changed paths: M test/integration/test_data_manager_table_reload.py M test/integration/test_resolvers.py Log Message: ----------- Append temp dirs to test_driver list of temp dirs Thanks for the hint @jmchilton. Commit: 642aaa811bb99a0ef3b532eac3fd5d245972994a https://github.com/galaxyproject/galaxy/commit/642aaa811bb99a0ef3b532eac3fd5... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-09-16 (Sat, 16 Sep 2017) Changed paths: M test/base/driver_util.py Log Message: ----------- Do cleanup if skip_cleanup is not set Commit: a17ae7b90cda7c6c71875f0a7b332410dab15a43 https://github.com/galaxyproject/galaxy/commit/a17ae7b90cda7c6c71875f0a7b332... Author: John Chilton <jmchilton@gmail.com> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M lib/galaxy/config.py M lib/galaxy/dependencies/__init__.py M lib/galaxy/dependencies/conditional-requirements.txt M lib/galaxy/dependencies/dev-requirements.txt M lib/galaxy/queue_worker.py M lib/galaxy/tools/parameters/dynamic_options.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/webapps/galaxy/config_watchers.py M lib/tool_shed/tool_shed_registry.py M lib/tool_shed/tools/tool_validator.py M test/base/driver_util.py A test/integration/test_data_manager_table_reload.py M test/integration/test_resolvers.py A test/integration/tool_sheds_conf.xml Log Message: ----------- Merge pull request #4617 from mvdbeek/data_manager_watch_new_tables Allow adding new data tables without restart Compare: https://github.com/galaxyproject/galaxy/compare/d9a805536840...a17ae7b90cda