Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b3d5f80621cc7a450158c472aa4bffa0570fbe6c https://github.com/galaxyproject/galaxy/commit/b3d5f80621cc7a450158c472aa4bf... Author: John Chilton <jmchilton@gmail.com> Date: 2015-11-10 (Tue, 10 Nov 2015) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/util/job_script/__init__.py M lib/galaxy/tools/parameters/basic.py M test/functional/tools/samples_tool_conf.xml A test/functional/tools/unicode_stream.xml Log Message: ----------- Improved unicode handling stdout/stderr/command_line. Commit: c790fcb84d005025b331b2a9106e7097860a7545 https://github.com/galaxyproject/galaxy/commit/c790fcb84d005025b331b2a9106e7... Author: John Chilton <jmchilton@gmail.com> Date: 2015-11-10 (Tue, 10 Nov 2015) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/output_checker.py M lib/galaxy/model/__init__.py Log Message: ----------- Unify standard error and output trimming and unicoding. Should be more complete now (were paths for task and jobs where it wasn't be unicodified) and with less duplication. Moved logic into model layer where it probably belongs anyway. Commit: 6b521a3557bc61e37200cbd4c14dbc037cf9696d https://github.com/galaxyproject/galaxy/commit/6b521a3557bc61e37200cbd4c14db... Author: John Chilton <jmchilton@gmail.com> Date: 2015-11-10 (Tue, 10 Nov 2015) Changed paths: M lib/galaxy/model/__init__.py M test/unit/jobs/test_job_output_checker.py Log Message: ----------- Fix failing tests for output checker changes. Commit: 69dcf36678db48851cb6d820aec85f9fa37ccfbf https://github.com/galaxyproject/galaxy/commit/69dcf36678db48851cb6d820aec85... Author: John Chilton <jmchilton@gmail.com> Date: 2015-11-10 (Tue, 10 Nov 2015) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Fixes for c790fcb84d005025b331b2a9106e7097860a7545. Thanks to @nsoranzo. Commit: df576f3d3602cad77ea6829717ea11606bce97c2 https://github.com/galaxyproject/galaxy/commit/df576f3d3602cad77ea6829717ea1... Author: John Chilton <jmchilton@gmail.com> Date: 2015-11-10 (Tue, 10 Nov 2015) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Remove more unneeded stuff from galaxy.jobs now. Thanks to @nsoranzo. Commit: d0751ef80c3074e9f67cde240d4b512e1bc9a445 https://github.com/galaxyproject/galaxy/commit/d0751ef80c3074e9f67cde240d4b5... Author: John Chilton <jmchilton@gmail.com> Date: 2015-11-10 (Tue, 10 Nov 2015) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Restore lost call. Caught by @nsoranzo. Commit: 8aab57a09eb322c7f10025ee4518995323fbc637 https://github.com/galaxyproject/galaxy/commit/8aab57a09eb322c7f10025ee45189... Author: John Chilton <jmchilton@gmail.com> Date: 2015-11-11 (Wed, 11 Nov 2015) Changed paths: M lib/galaxy/jobs/output_checker.py M lib/galaxy/model/__init__.py Log Message: ----------- Fix nit picks unrelated to PR #1052... ... as pointed out by @nsoranzo and @blankenberg. Commit: 24a7ee6205ac4cb45f9249a6aa3f89241121c7ca https://github.com/galaxyproject/galaxy/commit/24a7ee6205ac4cb45f9249a6aa3f8... Author: Björn Grüning <bjoern@gruenings.eu> Date: 2015-11-11 (Wed, 11 Nov 2015) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/output_checker.py M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/util/job_script/__init__.py M lib/galaxy/model/__init__.py M lib/galaxy/tools/parameters/basic.py M test/functional/tools/samples_tool_conf.xml A test/functional/tools/unicode_stream.xml M test/unit/jobs/test_job_output_checker.py Log Message: ----------- Merge pull request #1052 from jmchilton/unicode_stream_3 Improved Encoding Handling for Jobs Compare: https://github.com/galaxyproject/galaxy/compare/75d64893489d...24a7ee6205ac