1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/3ecffd889d5c/ Changeset: 3ecffd889d5c User: jmchilton Date: 2014-06-05 18:54:58 Summary: Fix working directory used for remote metadata command generation. In short - should fix bam outputs for LWR jobs when setting metadata on remote resource. Thanks to @natefoo for tracking down problem. Affected #: 1 file diff -r dd6fa0b34036d227900c4b92b514ee86aaca60a5 -r 3ecffd889d5c97478630cd127c8ac4681ec49872 lib/galaxy/datatypes/metadata.py --- a/lib/galaxy/datatypes/metadata.py +++ b/lib/galaxy/datatypes/metadata.py @@ -722,7 +722,7 @@ sa_session.flush() metadata_files_list.append( metadata_files ) #return command required to build - return "%s %s %s %s %s %s %s %s" % ( os.path.join( exec_dir, 'set_metadata.sh' ), dataset_files_path, tmp_dir, config_root, config_file, datatypes_config, job_metadata, " ".join( map( __metadata_files_list_to_cmd_line, metadata_files_list ) ) ) + return "%s %s %s %s %s %s %s %s" % ( os.path.join( exec_dir, 'set_metadata.sh' ), dataset_files_path, compute_tmp_dir or tmp_dir, config_root, config_file, datatypes_config, job_metadata, " ".join( map( __metadata_files_list_to_cmd_line, metadata_files_list ) ) ) def external_metadata_set_successfully( self, dataset, sa_session ): metadata_files = self.get_output_filenames_by_dataset( dataset, sa_session ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.