1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/ac0f69d3bc00/ Changeset: ac0f69d3bc00 User: greg Date: 2014-06-09 17:20:49 Summary: Fix the various step handler function calls to the env manager's get_env_shell_file_paths_from_setup_environment_elem function. Affected #: 1 file diff -r 6cb0dc6340c8f46ab51ec98a9d91994a497d1132 -r ac0f69d3bc00163d70959525c09d2d12a8b21b4f lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py @@ -1130,8 +1130,7 @@ # in action_dict. all_env_shell_file_paths = [] env_manager = EnvManager( app ) - action_dict = env_manager.get_env_shell_file_paths_from_setup_environment_elem( app, - all_env_shell_file_paths, + action_dict = env_manager.get_env_shell_file_paths_from_setup_environment_elem( all_env_shell_file_paths, action_elem, action_dict ) perl_packages = [] @@ -1234,8 +1233,7 @@ # 'env_shell_file_paths' entry in action_dict. all_env_shell_file_paths = [] env_manager = EnvManager( app ) - action_dict = env_manager.get_env_shell_file_paths_from_setup_environment_elem( app, - all_env_shell_file_paths, + action_dict = env_manager.get_env_shell_file_paths_from_setup_environment_elem( all_env_shell_file_paths, action_elem, action_dict ) r_packages = list() @@ -1356,8 +1354,7 @@ # 'env_shell_file_paths' entry in action_dict. all_env_shell_file_paths = [] env_manager = EnvManager( app ) - action_dict = env_manager.get_env_shell_file_paths_from_setup_environment_elem( app, - all_env_shell_file_paths, + action_dict = env_manager.get_env_shell_file_paths_from_setup_environment_elem( all_env_shell_file_paths, action_elem, action_dict ) ruby_package_tups = [] Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.