[galaxy-commits] commit/galaxy-central: guerler: Charts: Refactor nvd3 wrappers, remove excluded wrappers

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/a932242dc2da/ Changeset: a932242dc2da User: guerler Date: 2014-06-07 23:51:41 Summary: Charts: Refactor nvd3 wrappers, remove excluded wrappers Affected #: 59 files diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/build-app.js --- a/config/plugins/visualizations/charts/static/build-app.js +++ b/config/plugins/visualizations/charts/static/build-app.js @@ -3,4 +3,4 @@ // (c) 2009-2013 Jeremy Ashkenas, DocumentCloud Inc. // Underscore may be freely distributed under the MIT license. -define("mvc/ui/ui-modal",[],function(){var 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e&&t.html(e),t.html()},_template:function(e){var t='<div class="ui-portlet">';return e.title&&(t+='<div id="portlet-header" class="portlet-header"><div id="operations" style="float: right;"></div><h3>',e.icon&&(t+='<i class="icon fa '+e.icon+'"> </i>'),t+='<span id="portlet-header-text">'+e.title+"</span>"+"</h3>"+"</div>"),t+='<div id="portlet-content" class="portlet-content">',e.placement=="top"&&(t+='<div id="buttons" class="buttons"></div>'),t+='<div id="content" class="content"></div>',e.placement=="bottom"&&(t+='<div id="buttons" class="buttons"></div>'),t+="</div></div>",t}});return{View:t}}),define("plugin/library/ui-select",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{id:"",cls:"",empty:"No data 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n=$(this.el).find(".root"),r=this;n.on("click",function(e){e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide()},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='<li><a href="'+e.href+'" target="'+e.target+'">';return e.icon&&(t+='<i class="fa '+e.icon+'"></i>'),t+=" "+e.title+"</a>"+"</li>",t},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-right" role="menu"></ul>'},_templateDivider:function(){return'<li class="divider"></li>'},_template:function(e){var t='<div 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n=this;this.$el.find("input").on("change",function(){n.value(n._getValue())})},value:function(e){var t=this.current;e!==undefined&&(this.$el.find("label").removeClass("active"),this.$el.find('[value="'+e+'"]').closest("label").addClass("active"),this.current=e);var n=this.current;return n!=t&&this.options.onchange&&this.options.onchange(this.current),this.current},_getValue:function(){var e=this.$el.find(":checked"),t=null;return e.length>0&&(t=e.val()),t},_template:function(e){var t='<div class="btn-group ui-radiobutton" data-toggle="buttons">';for(key in e.data){var n=e.data[key];t+='<label class="btn btn-default"><input type="radio" name="'+e.id+'" value="'+n.value+'" selected>'+n.label+"</label>"}return t+="</div>",t}});return{Label:i,Button:s,Icon:o,ButtonIcon:u,Input:h,Anchor:a,Message:f,Searchbox:l,Select:t,ButtonMenu:c,Modal:n,Textarea:p,Image:r,RadioButton:d}}),define("plugin/library/jobs",["utils/utils"],function(e){return 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The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n){var r=this;e.groups?this._get_dataset(e.id,function(){r._get(e,t)}):this._get_dataset(e.id,t,n)},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request("GET",config.root+"api/datasets/"+t,{},function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.end+"_"+t},_get:function(e,t){e.start||(e.start=0),e.end||(e.end=this.app.config.get("query_limit"));var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,end:e.end,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){console.debug("Datasets::_fill_from_cache() - Filling request from cache.");var t=e.start,n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("FAILED - Datasets::_fill_from_cache() - Invalid range.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];if(o.index=="auto")for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}else{var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=Math.abs(t.end-t.start),s=this.app.config.get("query_limit");if(!i||i>s)i=s;var o=0;t.columns&&(o=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+o+" column(s)")),o==0&&console.debug("Datasets::_fetch() - No columns requested");var u="";for(var a in t.columns)u+=t.columns[a]+",";u=u.substring(0,u.length-1);var f=this;e.request("GET",config.root+"api/datasets/"+t.dataset_id,{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:u},function(e){var t=new Array(o);for(var r=0;r<o;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var s in i){var u=i[s];u!==undefined&&u!=2147483647&&t[s].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/library/deferred",["utils/utils"],function(e){return Backbone.Model.extend({queue:[],process:{},counter:0,initialize:function(){this.on("refresh",function(){for(var e in this.queue)if(this.counter==0){var t=this.queue[e];this.queue.splice(e,1),t()}})},execute:function(e){this.queue.push(e),this.trigger("refresh")},register:function(){var t=e.uuid();return this.process[t]=!0,this.counter++,console.debug("Deferred:register() - Registering "+t),t},done:function(e){this.process[e]&&(delete this.process[e],this.counter--,console.debug("Deferred:done() - Unregistering "+e),this.trigger("refresh"))},ready:function(){return this.counter==0}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if(e==="config"){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/models/chart",["plugin/models/groups","plugin/library/deferred","mvc/visualization/visualization-model"],function(e,t){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(n){this.groups=new e,this.settings=new Backbone.Model,this.deferred=new t},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e,t,i){var s=new XMLSerializer,o="",u=this,a=0,f=0;return e.find("svg").each(function(){var e=$(this);n(e),a=parseInt(e.css("height")),f=parseInt(e.css("width")),e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:f,height:a}),e.find(".highcharts-button").hide(),o+=s.serializeToString(this),e.find(".highcharts-button").show()}),r(e,t,{filename:i||"chart",type:"application/pdf",height:a,width:f,scale:2,svg:o}),o}function n(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i<s;i++)try{e.find(r[i].selectorText).each(function(e,t){t.style.cssText+=r[i].style.cssText})}catch(o){}}}function r(e,t,n){var r=e.find("#viewport-form");r.length===0&&(r=$("<form>",{id:"viewport-form",method:"post",action:t,display:"none"}),e.append(r)),r.empty();for(name in n){var i=$("<input/>",{type:"hidden",name:name,value:n[name]});r.append(i)}try{r.submit()}catch(s){console.log(s)}}return{create:t}}),define("plugin/views/viewport",["mvc/ui/ui-portlet","plugin/library/ui","plugin/library/screenshot","utils/utils"],function(e,t,n,r){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=r.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,100),this._createContainer("div");var n=this;this.chart.on("redraw",function(){n._draw(n.chart)}),this.chart.on("set:state",function(){var e=n.$el.find("#info"),t=n.$el.find(".charts-viewport-container"),r=e.find("#icon");r.removeClass(),e.show(),e.find("#text").html(n.chart.get("state_info"));var i=n.chart.get("state");switch(i){case"ok":e.hide(),t.show();break;case"failed":r.addClass("icon fa fa-warning"),t.hide();break;default:r.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n<t;n++){var r=$(this._templateContainer(e,parseInt(100/t)));this.$el.append(r),this.container_list[n]=r,e=="svg"?this.canvas_list[n]=d3.select(r.find("#canvas")[0]):this.canvas_list[n]=r.find("#canvas")}},_draw:function(e){var t=this,n=e.deferred.register(),r=e.get("type");this.chart_definition=e.definition;var i=this.chart_definition.use_panels,s=1;i&&(s=e.groups.length),this._createContainer(this.chart_definition.tag,s),e.state("wait","Please wait...");if(!this.chart_definition.execute||this.chart_definition.execute&&e.get("modified"))this.app.jobs.cleanup(e),e.set("modified",!1);var t=this;require(["plugin/charts/"+this.app.chartPath(r)+"/wrapper"],function(r){var i=new r(t.app,{canvas:t.canvas_list});t.chart_definition.execute?t.app.jobs.request(e,t._defaultSettingsString(e),t._defaultRequestString(e),function(){i.draw(n,e,t._defaultRequestDictionary(e))},function(){e.deferred.done(n)}):i.draw(n,e,t._defaultRequestDictionary(e))})},_defaultRequestString:function(e){var t="",n=0,r=this;return e.groups.each(function(e){n++;for(var i in r.chart_definition.columns)t+=i+"_"+n+":"+(parseInt(e.get(i))+1)+", "}),t.substring(0,t.length-2)},_defaultSettingsString:function(e){var t="";for(key in e.settings.attributes)t+=key+":"+e.settings.get(key)+", ";return t.substring(0,t.length-2)},_defaultRequestDictionary:function(e){var t={groups:[]};this.chart_definition.execute?t.id=e.get("dataset_id_job"):t.id=e.get("dataset_id");var n=0,i=this;return e.groups.each(function(e){var s={};for(var o in i.chart_definition.columns){var u=i.chart_definition.columns[o];s[o]=r.merge({index:e.get(o)},u)}t.groups.push({key:++n+":"+e.get("key"),columns:s})}),t},_template:function(){return'<div class="charts-viewport"><div id="info" class="info"><span id="icon" class="icon" /><span id="text" class="text" /></div></div>'},_templateContainer:function(e,t){return'<div class="charts-viewport-container" style="width:'+t+'%;">'+'<div id="menu"/>'+"<"+e+' id="canvas" class="charts-viewport-canvas">'+"</div>"}})}),define("plugin/views/viewer",["utils/utils","plugin/library/ui","mvc/ui/ui-portlet","plugin/models/group","plugin/views/viewport","plugin/library/screenshot"],function(e,t,n,r,i,s){return Backbone.View.extend({initialize:function(e,r){this.app=e,this.chart=this.app.chart,this.viewport_view=new i(e);var o=this;this.message=new t.Message,this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",scrollable:!1,operations:{edit_button:new t.ButtonIcon({icon:"fa-edit",tooltip:"Customize this chart",title:"Editor",onclick:function(){o._wait(o.chart,function(){o.app.go("editor")})}}),picture_button:new t.ButtonIcon({icon:"fa-camera",tooltip:"Download PDF-file ("+o.app.config.get("screenshot_url")+")",title:"Screenshot",onclick:function(){o._wait(o.chart,function(){s.create(o.viewport_view.$el,o.app.config.get("screenshot_url"),o.chart.get("title"))})}})}}),this.portlet.append(this.message.$el),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var o=this;this.chart.on("change:title",function(){o._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e)},_wait:function(e,t){e.deferred.ready()?t():this.message.update({message:"Your chart is currently being processed. Please wait and try again."})}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(t){this.visible=!1,this.$nav=null,this.$content=null,this.first_tab=null,this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},add:function(e){var t=this,n=e.id,r=$(this._template_tab(e)),i=$(this._template_tab_content(e));this.list[n]=e.ondel?!0:!1,this.options.onnew?this.$nav.find("#new-tab").before(r):this.$nav.append(r),i.append(e.$el),this.$content.append(i),_.size(this.list)==1&&(r.addClass("active"),i.addClass("active"),this.first_tab=n);if(e.ondel){var s=r.find("#delete");s.tooltip({title:"Delete this tab",placement:"bottom",container:t.$el}),s.on("click",function(){return s.tooltip("destroy"),t.$el.find(".tooltip").remove(),e.ondel(),!1})}r.on("click",function(r){r.preventDefault(),e.onclick?e.onclick():t.show(n)})},del:function(e){this.$el.find("#tab-"+e).remove(),this.$el.find("#tab-content-"+e).remove(),this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab)},delRemovable:function(){for(var e in this.list)this.list[e]&&this.del(e)},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&(this.$el.find(".tab-element").removeClass("active"),this.$el.find(".tab-pane").removeClass("active"),this.$el.find("#tab-"+e).addClass("active"),this.$el.find("#tab-content-"+e).addClass("active"))},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.$el.find("#tab-title-text-"+e);return t&&n.html(t),n.html()},_template:function(e){return'<div class="ui-tabs tabbable tabs-left"><ul id="tab-navigation" class="tab-navigation nav nav-tabs"><div class="operations" style="float: right; margin-bottom: 4px;"></div></ul><div id="tab-content" class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i class="ui-tabs-add fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="tab-'+e.id+'" class="tab-element">'+'<a id="tab-title-link-'+e.id+'" title="" href="#tab-content-'+e.id+'" data-original-title="">'+'<span id="tab-title-text-'+e.id+'">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" class="ui-tabs-delete fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="tab-content-'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("plugin/library/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(t));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=$("<tr></tr>")},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e,t,n){var r=$("<td></td>");t&&r.css("width",t),n&&r.css("text-align",n),r.append(e),this.row.append(r)},append:function(e){this._commit(e)},prepend:function(e){this._commit(e,!0)},get:function(e){return this.$el.find("#"+e)},del:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.html(""),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t){this.del(e),this.row.attr("id",e),t?this.$tbody.prepend(this.row):this.$tbody.append(this.row),this.row=$("<tr></tr>"),this.row_count++,this._refresh()},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n!=""&&n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="ui-table '+e.cls+'">'+"<thead></thead>"+'<tbody style="cursor: pointer;"></tbody>'+"</table>"+"<tmessage>"+e.content+"</tmessage>"+"<div>"}});return{View:t}}),define("plugin/views/group",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){s.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0});this.table.add(u.title,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var f=this.chart.deferred.register();this.app.datasets.request({id:e},function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.chart.deferred.done(f)})},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=[],f=n[e];o&&a.push({label:"Column: Row Number",value:"auto"});var l=t.metadata_column_types;for(var c in l){var h=!1;l[c]=="int"||l[c]=="float"?h=u:h=s,h&&a.push({label:"Column: "+(parseInt(c)+1)+" ["+l[c]+"]",value:c})}f.update(a);if(!f.exists(this.group.get(e))){var p=f.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to 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'+e.cls+'">'}}),p=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:!1,visible:!0,cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return'<textarea id="'+e.id+'" class="ui-textarea '+e.cls+'" rows="5"></textarea>'}}),d=Backbone.View.extend({optionsDefault:{value:"",visible:!0,cls:"",data:[],id:e.uuid()},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.visible||this.$el.hide(),this.options.value&&this.value(this.options.value),this.current=this.options.value;var n=this;this.$el.find("input").on("change",function(){n.value(n._getValue())})},value:function(e){var t=this.current;e!==undefined&&(this.$el.find("label").removeClass("active"),this.$el.find('[value="'+e+'"]').closest("label").addClass("active"),this.current=e);var n=this.current;return n!=t&&this.options.onchange&&this.options.onchange(this.current),this.current},_getValue:function(){var e=this.$el.find(":checked"),t=null;return e.length>0&&(t=e.val()),t},_template:function(e){var t='<div class="btn-group ui-radiobutton" data-toggle="buttons">';for(key in e.data){var n=e.data[key];t+='<label class="btn btn-default"><input type="radio" name="'+e.id+'" value="'+n.value+'" selected>'+n.label+"</label>"}return t+="</div>",t}});return{Label:i,Button:s,Icon:o,ButtonIcon:u,Input:h,Anchor:a,Message:f,Searchbox:l,Select:t,ButtonMenu:c,Modal:n,Textarea:p,Image:r,RadioButton:d}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request("PUT",config.root+"api/histories/none/contents/"+r,{deleted:!0},function(){n._refreshHdas()}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request("POST",config.root+"api/tools",data,function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),this.app.storage.save(),o._wait(t,i,s)}},function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()})},_wait:function(t,n,r){var i=this;e.request("GET",config.root+"api/datasets/"+t.get("dataset_id_job"),{},function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n){var r=this;e.groups?this._get_dataset(e.id,function(){r._get(e,t)}):this._get_dataset(e.id,t,n)},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request("GET",config.root+"api/datasets/"+t,{},function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.end+"_"+t},_get:function(e,t){e.start||(e.start=0),e.end||(e.end=this.app.config.get("query_limit"));var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,end:e.end,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){console.debug("Datasets::_fill_from_cache() - Filling request from cache.");var t=e.start,n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("FAILED - Datasets::_fill_from_cache() - Invalid range.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];if(o.index=="auto")for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}else{var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=Math.abs(t.end-t.start),s=this.app.config.get("query_limit");if(!i||i>s)i=s;var o=0;t.columns&&(o=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+o+" column(s)")),o==0&&console.debug("Datasets::_fetch() - No columns requested");var u="";for(var a in t.columns)u+=t.columns[a]+",";u=u.substring(0,u.length-1);var f=this;e.request("GET",config.root+"api/datasets/"+t.dataset_id,{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:u},function(e){var t=new Array(o);for(var r=0;r<o;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var s in i){var u=i[s];u!==undefined&&u!=2147483647&&t[s].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/library/deferred",["utils/utils"],function(e){return Backbone.Model.extend({queue:[],process:{},counter:0,initialize:function(){this.on("refresh",function(){for(var e in this.queue)if(this.counter==0){var t=this.queue[e];this.queue.splice(e,1),t()}})},execute:function(e){this.queue.push(e),this.trigger("refresh")},register:function(){var t=e.uuid();return this.process[t]=!0,this.counter++,console.debug("Deferred:register() - Registering "+t),t},done:function(e){this.process[e]&&(delete this.process[e],this.counter--,console.debug("Deferred:done() - Unregistering "+e),this.trigger("refresh"))},ready:function(){return this.counter==0}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if(e==="config"){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/models/chart",["plugin/models/groups","plugin/library/deferred","mvc/visualization/visualization-model"],function(e,t){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(n){this.groups=new e,this.settings=new Backbone.Model,this.deferred=new t},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e,t,i){var s=new XMLSerializer,o="",u=this,a=0,f=0;return e.find("svg").each(function(){var e=$(this);n(e),a=parseInt(e.css("height")),f=parseInt(e.css("width")),e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:f,height:a}),e.find(".highcharts-button").hide(),o+=s.serializeToString(this),e.find(".highcharts-button").show()}),r(e,t,{filename:i||"chart",type:"application/pdf",height:a,width:f,scale:2,svg:o}),o}function n(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i<s;i++)try{e.find(r[i].selectorText).each(function(e,t){t.style.cssText+=r[i].style.cssText})}catch(o){}}}function r(e,t,n){var r=e.find("#viewport-form");r.length===0&&(r=$("<form>",{id:"viewport-form",method:"post",action:t,display:"none"}),e.append(r)),r.empty();for(name in n){var i=$("<input/>",{type:"hidden",name:name,value:n[name]});r.append(i)}try{r.submit()}catch(s){console.log(s)}}return{create:t}}),define("plugin/views/viewport",["mvc/ui/ui-portlet","plugin/library/ui","plugin/library/screenshot","utils/utils"],function(e,t,n,r){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=r.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,100),this._createContainer("div");var n=this;this.chart.on("redraw",function(){n._draw(n.chart)}),this.chart.on("set:state",function(){var e=n.$el.find("#info"),t=n.$el.find(".charts-viewport-container"),r=e.find("#icon");r.removeClass(),e.show(),e.find("#text").html(n.chart.get("state_info"));var i=n.chart.get("state");switch(i){case"ok":e.hide(),t.show();break;case"failed":r.addClass("icon fa fa-warning"),t.hide();break;default:r.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n<t;n++){var r=$(this._templateContainer(e,parseInt(100/t)));this.$el.append(r),this.container_list[n]=r,e=="svg"?this.canvas_list[n]=d3.select(r.find("#canvas")[0]):this.canvas_list[n]=r.find("#canvas")}},_draw:function(e){var t=this,n=e.deferred.register(),r=e.get("type");this.chart_definition=e.definition;var i=this.chart_definition.use_panels||e.settings.get("use_panels")==="true",s=1;i&&(s=e.groups.length),this._createContainer(this.chart_definition.tag,s),e.state("wait","Please wait...");if(!this.chart_definition.execute||this.chart_definition.execute&&e.get("modified"))this.app.jobs.cleanup(e),e.set("modified",!1);var t=this;require(["plugin/charts/"+this.app.chartPath(r)+"/wrapper"],function(r){var i=new r(t.app,{canvas:t.canvas_list});t.chart_definition.execute?t.app.jobs.request(e,t._defaultSettingsString(e),t._defaultRequestString(e),function(){i.draw(n,e,t._defaultRequestDictionary(e))},function(){e.deferred.done(n)}):i.draw(n,e,t._defaultRequestDictionary(e))})},_defaultRequestString:function(e){var t="",n=0,r=this;return e.groups.each(function(e){n++;for(var i in r.chart_definition.columns)t+=i+"_"+n+":"+(parseInt(e.get(i))+1)+", "}),t.substring(0,t.length-2)},_defaultSettingsString:function(e){var t="";for(key in e.settings.attributes)t+=key+":"+e.settings.get(key)+", ";return t.substring(0,t.length-2)},_defaultRequestDictionary:function(e){var t={groups:[]};this.chart_definition.execute?t.id=e.get("dataset_id_job"):t.id=e.get("dataset_id");var n=0,i=this;return e.groups.each(function(e){var s={};for(var o in i.chart_definition.columns){var u=i.chart_definition.columns[o];s[o]=r.merge({index:e.get(o)},u)}t.groups.push({key:++n+":"+e.get("key"),columns:s})}),t},_template:function(){return'<div class="charts-viewport"><div id="info" class="info"><span id="icon" class="icon" /><span id="text" class="text" /></div></div>'},_templateContainer:function(e,t){return'<div class="charts-viewport-container" style="width:'+t+'%;">'+'<div id="menu"/>'+"<"+e+' id="canvas" class="charts-viewport-canvas">'+"</div>"}})}),define("plugin/views/viewer",["utils/utils","plugin/library/ui","mvc/ui/ui-portlet","plugin/models/group","plugin/views/viewport","plugin/library/screenshot"],function(e,t,n,r,i,s){return Backbone.View.extend({initialize:function(e,r){this.app=e,this.chart=this.app.chart,this.viewport_view=new i(e);var o=this;this.message=new t.Message,this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",scrollable:!1,operations:{edit_button:new t.ButtonIcon({icon:"fa-edit",tooltip:"Customize this chart",title:"Editor",onclick:function(){o._wait(o.chart,function(){o.app.go("editor")})}}),picture_button:new t.ButtonIcon({icon:"fa-camera",tooltip:"Download PDF-file ("+o.app.config.get("screenshot_url")+")",title:"Screenshot",onclick:function(){o._wait(o.chart,function(){s.create(o.viewport_view.$el,o.app.config.get("screenshot_url"),o.chart.get("title"))})}})}}),this.portlet.append(this.message.$el),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var o=this;this.chart.on("change:title",function(){o._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e)},_wait:function(e,t){e.deferred.ready()?t():this.message.update({message:"Your chart is currently being processed. Please wait and try again."})}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(t){this.visible=!1,this.$nav=null,this.$content=null,this.first_tab=null,this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},add:function(e){var t=this,n=e.id,r=$(this._template_tab(e)),i=$(this._template_tab_content(e));this.list[n]=e.ondel?!0:!1,this.options.onnew?this.$nav.find("#new-tab").before(r):this.$nav.append(r),i.append(e.$el),this.$content.append(i),_.size(this.list)==1&&(r.addClass("active"),i.addClass("active"),this.first_tab=n);if(e.ondel){var s=r.find("#delete");s.tooltip({title:"Delete this tab",placement:"bottom",container:t.$el}),s.on("click",function(){return s.tooltip("destroy"),t.$el.find(".tooltip").remove(),e.ondel(),!1})}r.on("click",function(r){r.preventDefault(),e.onclick?e.onclick():t.show(n)})},del:function(e){this.$el.find("#tab-"+e).remove(),this.$el.find("#tab-content-"+e).remove(),this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab)},delRemovable:function(){for(var e in this.list)this.list[e]&&this.del(e)},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&(this.$el.find(".tab-element").removeClass("active"),this.$el.find(".tab-pane").removeClass("active"),this.$el.find("#tab-"+e).addClass("active"),this.$el.find("#tab-content-"+e).addClass("active"))},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.$el.find("#tab-title-text-"+e);return t&&n.html(t),n.html()},_template:function(e){return'<div class="ui-tabs tabbable tabs-left"><ul id="tab-navigation" class="tab-navigation nav nav-tabs"><div class="operations" style="float: right; margin-bottom: 4px;"></div></ul><div id="tab-content" class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i class="ui-tabs-add fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="tab-'+e.id+'" class="tab-element">'+'<a id="tab-title-link-'+e.id+'" title="" href="#tab-content-'+e.id+'" data-original-title="">'+'<span id="tab-title-text-'+e.id+'">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" class="ui-tabs-delete fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="tab-content-'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("plugin/library/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var 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o=this;this.app=i,this.chart=this.app.chart,this.options=r.merge(s,this.optionsDefault),this.message=new t.Message,this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Editor",operations:{save:new t.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){o._saveChart()}}),back:new t.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Cancel",onclick:function(){o.app.go("viewer"),o.app.storage.load()}})}}),this.types=new a(i,{onchange:function(e){var t=o.app.types.get(e);t||console.debug("FAILED - Editor::onchange() - Chart type not supported."),o.chart.definition=t,o.chart.settings.clear(),o.chart.set({type:e}),o.chart.set("modified",!0),console.debug("Editor::onchange() - Switched chart type.")},ondblclick:function(e){o._saveChart()}}),this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=o._addGroupModel();o.tabs.show(e.id)}}),this.title=new t.Input({placeholder:"Chart 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o=this;this.chart.on("change:title",function(e){o._refreshTitle()}),this.chart.on("change:type",function(e){o.types.value(e.get("type"))}),this.chart.on("reset",function(e){o._resetChart()}),this.app.chart.on("redraw",function(e){o.portlet.showOperation("back")}),this.app.chart.groups.on("add",function(e){o._addGroup(e)}),this.app.chart.groups.on("remove",function(e){o._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){o._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){o._refreshGroupKey()}),this._resetChart()},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e),this.title.value(e)},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Chart data"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new 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i.columns)if(e.attributes[r]=="null"){t.message.update({status:"danger",message:"This chart type requires column types not found in your tabular file."}),t.tabs.show(e.id),n=!1;return}});if(!n)return;this.app.go("viewer");var t=this;this.chart.deferred.execute(function(){t.app.storage.save(),t.chart.trigger("redraw")})}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:1e3,query_timeout:100,screenshot_url:"http://export.highcharts.com/"}})}),define("plugin/charts/nvd3/common/config",[],function(){return{title:"",category:"",library:"NVD3",tag:"svg",keywords:"default nvd3",settings:{separator_label:{title:"X axis",type:"separator"},x_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"X-axis",placeholder:"Axis label"},x_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values 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legend?",type:"select",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},donut_ratio:{title:"Donut ratio",info:"Determine how large the donut hole will be.",type:"select",init:"0.5",data:[{label:"50%",value:"0.5"},{label:"25%",value:"0.25"},{label:"10%",value:"0.10"},{label:"0%",value:"0"}]},label_separator:{type:"separator",title:"Label settings"},label_type:{title:"Donut label",info:"What would you like to show for each slice?",type:"select",init:"percent",data:[{label:"-- Nothing --",value:"hide",hide:"label_outside"},{label:"Label column",value:"key",show:"label_outside"},{label:"Value column",value:"value",show:"label_outside"},{label:"Percentage",value:"percent",show:"label_outside"}]},label_outside:{title:"Show outside",info:"Would you like to show labels outside the donut?",type:"select",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]}}})}),define("plugin/charts/nvd3/stackedarea_full/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Expanded",category:"Area charts",columns:{y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea_stream/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stream",category:"Area charts",keywords:"default nvd3",columns:{y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/histogram/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogram",columns:{y:{title:"Observations",is_numeric:!0}},settings:{x_axis_label:{init:"Values"},y_axis_label:{init:"Density"},y_axis_type:{init:"f"},y_axis_tick:{init:".2"}}})}),define("plugin/charts/nvd3/histogram_discrete/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Discrete Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogramdiscrete",columns:{x:{title:"Observations",is_label:!0}},settings:{x_axis_label:{init:"Breaks"},y_axis_label:{init:"Density"},y_axis_type:{init:"f"},y_axis_tick:{init:".2"}}})}),define("plugin/charts/nvd3/line/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Line chart",category:"Others",columns:{y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/scatter/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",category:"Others",columns:{x:{title:"Values for x-axis",is_numeric:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",category:"Area charts",columns:{y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/types",["plugin/charts/nvd3/bar/config","plugin/charts/nvd3/bar_stacked/config","plugin/charts/nvd3/bar_horizontal/config","plugin/charts/nvd3/bar_horizontal_stacked/config","plugin/charts/nvd3/line_focus/config","plugin/charts/nvd3/pie/config","plugin/charts/nvd3/stackedarea_full/config","plugin/charts/nvd3/stackedarea_stream/config","plugin/charts/nvd3/histogram/config","plugin/charts/nvd3/histogram_discrete/config","plugin/charts/nvd3/line/config","plugin/charts/nvd3/scatter/config","plugin/charts/nvd3/stackedarea/config"],function(e,t,n,r,i,s,o,u,a,f,l,c,h){return Backbone.Model.extend({defaults:{nvd3_bar:e,nvd3_bar_stacked:t,nvd3_bar_horizontal:n,nvd3_bar_horizontal_stacked:r,nvd3_line_focus:i,nvd3_stackedarea:h,nvd3_stackedarea_full:o,nvd3_stackedarea_stream:u,nvd3_pie:s,nvd3_line:l,nvd3_scatter:c,nvd3_histogram:a,nvd3_histogram_discrete:f}})}),define("plugin/app",["mvc/ui/ui-modal","mvc/ui/ui-portlet","plugin/library/ui","utils/utils","plugin/library/jobs","plugin/library/datasets","plugin/library/storage","plugin/views/viewer","plugin/views/editor","plugin/models/config","plugin/models/chart","plugin/charts/types"],function(e,t,n,r,i,s,o,u,a,f,l,c){return Backbone.View.extend({initialize:function(t){this.options=t,Galaxy&&Galaxy.modal?this.modal=Galaxy.modal:this.modal=new e.View,this.config=new f,this.types=new c,this.chart=new l,this.jobs=new i(this),this.datasets=new s(this),this.storage=new o(this),this.viewer_view=new u(this),this.editor_view=new a(this),this.$el.append(this.viewer_view.$el),this.$el.append(this.editor_view.$el);if(!this.storage.load())this.go("editor");else{this.go("viewer");var n=this;this.chart.deferred.execute(function(){n.chart.trigger("redraw")})}},go:function(e){$(".tooltip").hide();switch(e){case"editor":this.editor_view.show(),this.viewer_view.hide();break;case"viewer":this.editor_view.hide(),this.viewer_view.show()}},chartPath:function(e){var t=e.split(/_(.+)/);return t.length>=2?t[0]+"/"+t[1]:(console.debug("FAILED App:chartPath() - Invalid format: "+e),undefined)},execute:function(e){},onunload:function(){},log:function(e,t){console.log(e+" "+t)}})}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/bar/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/bar/config.js +++ /dev/null @@ -1,20 +0,0 @@ -define(['plugin/charts/highcharts/common/config'], function(config) { - -return $.extend(true, {}, config, { - title : 'Regular', - category : 'Bar diagrams', - keywords : 'highcharts', - columns : { - x : { - title : 'Values for x-axis', - is_label : true, - is_auto : true - }, - y : { - title : 'Values for y-axis', - is_numeric : true - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/bar/logo.png Binary file config/plugins/visualizations/charts/static/charts/highcharts/bar/logo.png has changed diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/bar/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/bar/wrapper.js +++ /dev/null @@ -1,20 +0,0 @@ -// dependencies -define(['plugin/charts/highcharts/common/wrapper'], function(Highcharts) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, chart, request_dictionary) { - var hc = new Highcharts(this.app, this.options); - hc.draw(process_id, 'column', chart, request_dictionary); - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/bar_horizontal/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/bar_horizontal/config.js +++ /dev/null @@ -1,25 +0,0 @@ -define(['plugin/charts/highcharts/common/config'], function(config) { - -return $.extend(true, {}, config, { - title : 'Horizontal', - category : 'Bar diagrams', - keywords : 'highcharts', - columns : { - x : { - title : 'Values for x-axis', - is_label : true, - is_auto : true - }, - y : { - title : 'Values for y-axis', - is_numeric : true - } - }, - settings : { - x_axis_type : { - init : 'hide' - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/bar_horizontal/logo.png Binary file config/plugins/visualizations/charts/static/charts/highcharts/bar_horizontal/logo.png has changed diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/bar_horizontal/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/bar_horizontal/wrapper.js +++ /dev/null @@ -1,20 +0,0 @@ -// dependencies -define(['plugin/charts/highcharts/common/wrapper'], function(Highcharts) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, chart, request_dictionary) { - var hc = new Highcharts(this.app, this.options); - hc.draw(process_id, 'bar', chart, request_dictionary); - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/bar_horizontal_stacked/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/bar_horizontal_stacked/config.js +++ /dev/null @@ -1,25 +0,0 @@ -define(['plugin/charts/highcharts/common/config'], function(config) { - -return $.extend(true, {}, config, { - title : 'Stacked horizontal', - category : 'Bar diagrams', - keywords : 'highcharts', - settings : { - x_axis_type : { - init : 'hide' - } - }, - columns : { - x : { - title : 'Values for x-axis', - is_label : true, - is_auto : true - }, - y : { - title : 'Values for y-axis', - is_numeric : true - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/bar_horizontal_stacked/logo.png Binary file config/plugins/visualizations/charts/static/charts/highcharts/bar_horizontal_stacked/logo.png has changed diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/bar_horizontal_stacked/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/bar_horizontal_stacked/wrapper.js +++ /dev/null @@ -1,24 +0,0 @@ -// dependencies -define(['plugin/charts/highcharts/common/wrapper'], function(Highcharts) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, chart, request_dictionary) { - // finalize configuration - chart.settings.set('plotoptions_series_stacking', 'normal'); - - // draw chart - var hc = new Highcharts(this.app, this.options); - hc.draw(process_id, 'bar', chart, request_dictionary); - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/bar_stacked/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/bar_stacked/config.js +++ /dev/null @@ -1,20 +0,0 @@ -define(['plugin/charts/highcharts/common/config'], function(config) { - -return $.extend(true, {}, config, { - title : 'Stacked', - category : 'Bar diagrams', - keywords : 'highcharts', - columns : { - x : { - title : 'Values for x-axis', - is_label : true, - is_auto : true - }, - y : { - title : 'Values for y-axis', - is_numeric : true - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/bar_stacked/logo.png Binary file config/plugins/visualizations/charts/static/charts/highcharts/bar_stacked/logo.png has changed diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/bar_stacked/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/bar_stacked/wrapper.js +++ /dev/null @@ -1,25 +0,0 @@ -// dependencies -define(['plugin/charts/highcharts/common/wrapper'], function(Highcharts) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, chart, request_dictionary) - { - // finalize configuration - chart.settings.set('plotoptions_series_stacking', 'normal'); - - // draw chart - var hc = new Highcharts(this.app, this.options); - hc.draw(process_id, 'column', chart, request_dictionary); - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/boxplot/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/boxplot/config.js +++ /dev/null @@ -1,138 +0,0 @@ -define(['plugin/charts/highcharts/common/config'], function(config) { - -return $.extend(true, {}, { - title : 'Box plot', - category : 'Data processing (requires \'charts\' tool from Toolshed)', - library : 'Highcharts', - tag : 'div', - execute : 'boxplot', - keywords : 'highcharts', - columns : { - y : { - title : 'Observations', - is_numeric : true - } - }, - settings : { - separator_label : { - title : 'X axis', - type : 'separator' - }, - x_axis_label : { - title : 'Axis label', - info : 'Provide a label for the axis.', - type : 'text', - init : 'X-axis', - placeholder : 'Axis label' - }, - separator_tick : { - title : 'Y axis', - type : 'separator' - }, - y_axis_label : { - title : 'Axis label', - info : 'Provide a label for the axis.', - type : 'text', - init : 'Y-axis', - placeholder : 'Axis label' - }, - y_axis_type : { - title : 'Axis value type', - info : 'Select the value type of the axis.', - type : 'select', - init : 'auto', - data : [ - { - label : '-- Do not show values --', - value : 'hide', - hide : ['y_axis_tick'] - }, - { - label : 'Auto', - value : 'auto', - hide : ['y_axis_tick'] - }, - { - label : 'Float', - value : 'f', - show : ['y_axis_tick'] - }, - { - label : 'Exponent', - value : 'e', - show : ['y_axis_tick'] - }, - { - label : 'Integer', - value : 'd', - hide : ['y_axis_tick'] - }, - { - label : 'Percentage', - value : 'p', - show : ['y_axis_tick'] - }, - { - label : 'Rounded', - value : 'r', - show : ['y_axis_tick'] - }, - { - label : 'SI-prefix', - value : 's', - show : ['y_axis_tick'] - } - ] - }, - y_axis_tick : { - title : 'Axis tick format', - info : 'Select the tick format for the axis.', - type : 'select', - init : '.1', - data : [ - { - label : '0.00001', - value : '.5' - }, - { - label : '0.0001', - value : '.4' - }, - { - label : '0.001', - value : '.3' - }, - { - label : '0.01', - value : '.2' - }, - { - label : '0.1', - value : '.1' - }, - { - label : '1', - value : '1' - } - ] - }, - y_axis_grid : { - title : 'Axis grid', - info : 'Would you like to show grid lines for this axis?', - type : 'radiobutton', - init : '1', - data : [ - { - label : 'On', - value : '1' - }, - { - label : 'Off', - value : '0' - } - ] - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/boxplot/logo.png Binary file config/plugins/visualizations/charts/static/charts/highcharts/boxplot/logo.png has changed diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/boxplot/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/boxplot/wrapper.js +++ /dev/null @@ -1,79 +0,0 @@ -// dependencies -define(['plugin/charts/highcharts/common/highcharts-config', 'plugin/charts/highcharts/common/wrapper'], function(configmaker, Highcharts) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, chart, request_dictionary, callback) { - // configure request - var index = 0; - for (var i in request_dictionary.groups) { - var group = request_dictionary.groups[i]; - group.columns = null; - group.columns = { - x: { - index: index++ - } - } - } - - // hide legend - chart.settings.set('legend_enabled', 'false') - - // create configuration - this.hc_config = configmaker(chart, callback); - - // request data - var self = this; - this.app.datasets.request(request_dictionary, function() { - // reset data/categories - var data = []; - var categories = []; - - // loop through data groups - for (var key in request_dictionary.groups) { - // get group - var group = request_dictionary.groups[key]; - - // add category - categories.push(group.key); - - // format chart data - var point = []; - for (var key in group.values) { - point.push(group.values[key].x); - } - - // add to data - data.push (point); - } - - // categories - self.hc_config.xAxis.categories = categories; - - // update data - self.hc_config.series.push({ - type : 'boxplot', - data : data - }); - - // draw plot - self.options.canvas[0].highcharts(self.hc_config); - - // set chart state - chart.state('ok', 'Box plot drawn.'); - - // unregister process - chart.deferred.done(process_id); - }); - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/common/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/common/config.js +++ /dev/null @@ -1,249 +0,0 @@ -define([], function() { - -return { - title : '', - category : '', - library : 'Highcharts', - tag : 'div', - keywords : 'highcharts', - settings : { - separator_label : { - title : 'X axis', - type : 'separator' - }, - x_axis_label : { - title : 'Axis label', - info : 'Provide a label for the axis.', - type : 'text', - init : 'X-axis', - placeholder : 'Axis label' - }, - x_axis_type : { - title : 'Axis value type', - info : 'Select the value type of the axis.', - type : 'select', - init : 'auto', - data : [ - { - label : '-- Do not show values --', - value : 'hide', - hide : ['x_axis_tick'] - }, - { - label : 'Auto', - value : 'auto', - hide : ['x_axis_tick'] - }, - { - label : 'Float', - value : 'f', - show : ['x_axis_tick'] - }, - { - label : 'Exponent', - value : 'e', - show : ['x_axis_tick'] - }, - { - label : 'Integer', - value : 'd', - hide : ['x_axis_tick'] - }, - { - label : 'Percentage', - value : 'p', - show : ['x_axis_tick'] - }, - { - label : 'Rounded', - value : 'r', - show : ['x_axis_tick'] - }, - { - label : 'SI-prefix', - value : 's', - show : ['x_axis_tick'] - } - ] - }, - x_axis_tick : { - title : 'Axis tick format', - info : 'Select the tick format for the axis.', - type : 'select', - init : '.1', - data : [ - { - label : '0.00001', - value : '.5' - }, - { - label : '0.0001', - value : '.4' - }, - { - label : '0.001', - value : '.3' - }, - { - label : '0.01', - value : '.2' - }, - { - label : '0.1', - value : '.1' - }, - { - label : '1', - value : '1' - } - ] - - }, - x_axis_grid : { - title : 'Axis grid', - info : 'Would you like to show grid lines for this axis?', - type : 'radiobutton', - init : '0', - data : [ - { - label : 'On', - value : '1' - }, - { - label : 'Off', - value : '0' - } - ] - }, - separator_tick : { - title : 'Y axis', - type : 'separator' - }, - y_axis_label : { - title : 'Axis label', - info : 'Provide a label for the axis.', - type : 'text', - init : 'Y-axis', - placeholder : 'Axis label' - }, - y_axis_type : { - title : 'Axis value type', - info : 'Select the value type of the axis.', - type : 'select', - init : 'auto', - data : [ - { - label : '-- Do not show values --', - value : 'hide', - hide : ['y_axis_tick'] - }, - { - label : 'Auto', - value : 'auto', - hide : ['y_axis_tick'] - }, - { - label : 'Float', - value : 'f', - show : ['y_axis_tick'] - }, - { - label : 'Exponent', - value : 'e', - show : ['y_axis_tick'] - }, - { - label : 'Integer', - value : 'd', - hide : ['y_axis_tick'] - }, - { - label : 'Percentage', - value : 'p', - show : ['y_axis_tick'] - }, - { - label : 'Rounded', - value : 'r', - show : ['y_axis_tick'] - }, - { - label : 'SI-prefix', - value : 's', - show : ['y_axis_tick'] - } - ] - }, - y_axis_tick : { - title : 'Axis tick format', - info : 'Select the tick format for the axis.', - type : 'select', - init : '.1', - data : [ - { - label : '0.00001', - value : '.5' - }, - { - label : '0.0001', - value : '.4' - }, - { - label : '0.001', - value : '.3' - }, - { - label : '0.01', - value : '.2' - }, - { - label : '0.1', - value : '.1' - }, - { - label : '1', - value : '1' - } - ] - - }, - y_axis_grid : { - title : 'Axis grid', - info : 'Would you like to show grid lines for this axis?', - type : 'radiobutton', - init : '1', - data : [ - { - label : 'On', - value : '1' - }, - { - label : 'Off', - value : '0' - } - ] - }, - separator_legend : { - title : 'Others', - type : 'separator' - }, - legend_enabled : { - title : 'Show legend', - info : 'Would you like to add a legend?', - type : 'radiobutton', - init : 'true', - data : [ - { - label : 'Yes', - value : 'true' - }, - { - label : 'No', - value : 'false' - } - ] - } - } -}; - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/common/highcharts-config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/common/highcharts-config.js +++ /dev/null @@ -1,103 +0,0 @@ -// dependencies -define([], function() { - -// highcharts configuration -return function(chart) { - - // get chart settings - var settings = chart.settings; - - // initialize config object - var hc_config = { - chart: { - type : '', - zoomType : 'xy' - }, - - title: { - text : '' - }, - - legend: { - enabled : settings.get('legend_enabled') == undefined || settings.get('legend_enabled') == 'true' - }, - - credits: { - enabled : false - }, - - xAxis: { - title: { - text : settings.get('x_axis_label') - }, - stackLabels: { - enabled: false, - style: { - fontWeight : 'bold', - color : (Highcharts.theme && Highcharts.theme.textColor) || 'gray' - } - }, - labels: { - formatter : function() { - var axis_type = settings.get('x_axis_type'); - if (axis_type == 'auto' || axis_type === undefined) - return this.value; - var format = d3.format(settings.get('x_axis_tick') + axis_type); - return format(this.value); - }, - enabled : !(settings.get('x_axis_type') == 'hide') - }, - gridLineWidth : settings.get('x_axis_grid') - }, - - yAxis: { - title: { - text : settings.get('y_axis_label') - }, - labels: { - formatter : function() { - var axis_type = settings.get('y_axis_type'); - if (axis_type == 'auto' || axis_type === undefined) - return this.value; - var format = d3.format(settings.get('y_axis_tick') + axis_type); - return format(this.value); - }, - enabled : !(settings.get('y_axis_type') == 'hide') - }, - gridLineWidth : settings.get('y_axis_grid') - }, - plotOptions: { - series: { - animation : false, - stacking : settings.get('plotoptions_series_stacking') - }, - column: { - stacking : settings.get('plotoptions_column_stacking') - }, - area: { - stacking : settings.get('plotoptions_area_stacking'), - lineColor : '#ffffff', - lineWidth : 1, - marker: { - lineWidth : 1, - lineColor : '#ffffff' - } - }, - pie: { - allowPointSelect : true, - cursor : 'pointer', - dataLabels: { - enabled : false, - distance : -1 - } - } - }, - - series: [] - } - - // callback - return hc_config; -}; - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/common/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/common/wrapper.js +++ /dev/null @@ -1,179 +0,0 @@ -// dependencies -define(['utils/utils', 'plugin/charts/highcharts/common/highcharts-config'], function(Utils, configmaker) { - -// widget -return Backbone.View.extend( -{ - // highcharts series - hc_series: { - name : '', - data : [], - tooltip: { - headerFormat : '<em>{point.key}</em><br/>' - } - }, - - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, hc_type, chart, request_dictionary, callback) - { - // request data - var self = this; - this.app.datasets.request(request_dictionary, function() { - // check if this chart has multiple panels - if (!chart.definition.use_panels) { - // draw all groups into a single panel - if (self._drawGroups(hc_type, chart, request_dictionary.groups, self.options.canvas[0], callback)) { - chart.state('ok', 'Chart drawn.'); - } - } else { - // draw groups in separate panels - var valid = true; - for (var group_index in request_dictionary.groups) { - var group = request_dictionary.groups[group_index]; - if (!self._drawGroups(hc_type, chart, [group], self.options.canvas[group_index], callback)) { - valid = false; - break; - } - } - if (valid) { - chart.state('ok', 'Multi-panel chart drawn.'); - } - } - - // unregister process - chart.deferred.done(process_id); - }); - }, - - // draw all data into a single canvas - _drawGroups: function(hc_type, chart, groups, canvas, callback) { - // create configuration - var hc_config = configmaker(chart); - - // fix title - if (!chart.definition.use_panels) { - hc_config.title.text = chart.get('title'); - } - - // identify categories - this._makeCategories(chart, groups, hc_config); - - // loop through data groups - for (var key in groups) { - // get group - var group = groups[key]; - - // reset data - var data = []; - - // format chart data - for (var value_index in group.values) { - // parse data - var point = []; - for (var column_index in group.values[value_index]) { - point.push(group.values[value_index][column_index]); - } - - // add to data - data.push (point); - } - - // highcharts series - var hc_series = { - name : group.key, - type : hc_type, - data : data - }; - - // append series - hc_config.series.push(hc_series); - } - - // make custom wrapper callback - if (callback) { - callback(hc_config); - } - - // draw plot - try { - canvas.highcharts(hc_config); - return true; - } catch (err) { - this._handleError(chart, err); - return false; - } - }, - - // create categories - _makeCategories: function(chart, groups, hc_config) { - // hashkeys, arrays and counter for labeled columns - var categories = {}; - var array = {}; - var counter = {}; - - // identify label columns - var chart_definition = groups[0]; - for (var key in chart_definition.columns) { - var column_def = chart_definition.columns[key]; - if (column_def.is_label) { - categories[key] = {}; - array[key] = []; - counter[key] = 0; - } - } - - // index all values contained in label columns (for all groups) - for (var i in groups) { - var group = groups[i]; - for (var j in group.values) { - var value_dict = group.values[j]; - for (var key in categories) { - var value = String(value_dict[key]); - if (categories[key][value] === undefined) { - categories[key][value] = counter[key]++; - array[key].push(value); - } - } - } - } - - // convert group values into category indeces - for (var i in groups) { - var group = groups[i]; - for (var j in group.values) { - var value_dict = group.values[j]; - for (var key in categories) { - var value = String(value_dict[key]); - value_dict[key] = categories[key][value] - } - } - } - console.log(array); - // add categories to highcharts configuration - for (var key in array) { - var axis = key + 'Axis'; - if (hc_config[axis]) { - hc_config[axis].categories = array[key]; - } - } - }, - - // handle error - _handleError: function(chart, err) { - var regex = /\www\.highcharts\.com([^&]+)/; - var match = err.match(regex); - if (match.length > 0) { - chart.state('failed', 'Highcharts error: <a target="_blank" href="http://' + match[0] + '">' + match[0] + '</a>'); - } else { - chart.state('failed', err); - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/heatmap/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/heatmap/config.js +++ /dev/null @@ -1,31 +0,0 @@ -define(['plugin/charts/highcharts/common/config'], function(config) { - -return $.extend(true, {}, config, { - title : 'Heatmap', - category : 'Others', - use_panels : true, - keywords : 'highcharts', - columns: { - x: { - title : 'Column labels', - is_label : true, - is_numeric : true - }, - y: { - title : 'Row labels', - is_label : true, - is_numeric : true - }, - z: { - title : 'Observations', - is_numeric : true - } - }, - settings: { - y_axis_grid : { - init : '0' - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/heatmap/logo.png Binary file config/plugins/visualizations/charts/static/charts/highcharts/heatmap/logo.png has changed diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/heatmap/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/heatmap/wrapper.js +++ /dev/null @@ -1,25 +0,0 @@ -// dependencies -define(['plugin/charts/highcharts/common/wrapper'], function(HighchartsWrapper) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, chart, request_dictionary) { - var hc = new HighchartsWrapper(this.app, this.options); - hc.draw(process_id, 'heatmap', chart, request_dictionary, function(model) { - model.colorAxis = { - minColor : '#00FF99', - maxColor : '#000066' - } - }); - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/histogram/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/histogram/config.js +++ /dev/null @@ -1,30 +0,0 @@ -define(['plugin/charts/highcharts/common/config'], function(config) { - -return $.extend(true, {}, config, { - title : 'Histogram', - category : 'Data processing (requires \'charts\' tool from Toolshed)', - execute : 'histogram', - keywords : 'highcharts', - columns : { - y : { - title : 'Observations', - is_numeric : true - } - }, - settings : { - x_axis_label : { - init : 'Values' - }, - y_axis_label : { - init : 'Density' - }, - y_axis_type : { - init : 'f' - }, - y_axis_tick : { - init : '.2' - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/histogram/logo.png Binary file config/plugins/visualizations/charts/static/charts/highcharts/histogram/logo.png has changed diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/histogram/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/histogram/wrapper.js +++ /dev/null @@ -1,34 +0,0 @@ -// dependencies -define(['plugin/charts/highcharts/common/wrapper'], function(Highcharts) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, chart, request_dictionary) { - // configure request - var index = 1; - for (var i in request_dictionary.groups) { - var group = request_dictionary.groups[i]; - group.columns = { - x: { - index: 0 - }, - y: { - index: index++ - } - } - } - - var hc = new Highcharts(this.app, this.options); - hc.draw(process_id, 'column', chart, request_dictionary); - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/histogram_discrete/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/histogram_discrete/config.js +++ /dev/null @@ -1,24 +0,0 @@ -define(['plugin/charts/highcharts/common/config'], function(config) { - -return $.extend(true, {}, config, { - title : 'Discrete Histogram', - category : 'Data processing (requires \'charts\' tool from Toolshed)', - execute : 'histogramdiscrete', - keywords : 'highcharts', - columns : { - y : { - title : 'Observations', - is_label : true - } - }, - settings : { - x_axis_label : { - init : 'Labels' - }, - y_axis_label : { - init : 'Density' - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/histogram_discrete/logo.png Binary file config/plugins/visualizations/charts/static/charts/highcharts/histogram_discrete/logo.png has changed diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/histogram_discrete/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/histogram_discrete/wrapper.js +++ /dev/null @@ -1,46 +0,0 @@ -// dependencies -define(['plugin/charts/highcharts/common/wrapper'], function(Highcharts) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, chart, request_dictionary) { - // configure request - var tmp_dict = { - id : request_dictionary.id, - groups : [] - }; - - // configure groups - var index = 0; - for (var group_index in request_dictionary.groups) { - var group = request_dictionary.groups[group_index]; - tmp_dict.groups.push({ - key : group.key, - columns : { - x: { - index : 0, - is_label : true - }, - y: { - index : ++index, - is_numeric : true - } - } - }); - } - - // draw chart - var hc = new Highcharts(this.app, this.options); - hc.draw(process_id, 'column', chart, tmp_dict); - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/line/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/line/config.js +++ /dev/null @@ -1,21 +0,0 @@ -define(['plugin/charts/highcharts/common/config'], function(config) { - -return $.extend(true, {}, config, { - title : 'Line', - category : 'Others', - keywords : 'highcharts', - columns : { - x : { - title : 'Values for x-axis', - is_label : true, - is_auto : true, - is_numeric : false - }, - y : { - title : 'Values for y-axis', - is_numeric : true - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/line/logo.png Binary file config/plugins/visualizations/charts/static/charts/highcharts/line/logo.png has changed diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/line/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/line/wrapper.js +++ /dev/null @@ -1,20 +0,0 @@ -// dependencies -define(['plugin/charts/highcharts/common/wrapper'], function(Highcharts) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, chart, request_dictionary) { - var hc = new Highcharts(this.app, this.options); - hc.draw(process_id, 'line', chart, request_dictionary); - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/pie/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/pie/config.js +++ /dev/null @@ -1,116 +0,0 @@ -define(['plugin/charts/highcharts/common/config'], function(config) { - -return $.extend(true, {}, config, { - title : 'Pie chart', - category : 'Area charts', - keywords : 'highcharts', - use_panels : true, - columns : { - label : { - title : 'Labels', - is_label : true, - is_auto : true - }, - y : { - title : 'Values', - is_numeric : true - } - }, - - settings : { - show_legend : { - title : 'Show legend', - info : 'Would you like to add a legend?', - type : 'select', - init : 'false', - data : [ - { - label : 'Yes', - value : 'true' - }, - { - label : 'No', - value : 'false' - } - ] - }, - - donut_ratio : { - title : 'Donut ratio', - info : 'Determine how large the donut hole will be.', - type : 'select', - init : '0.5', - data : [ - { - label : '50%', - value : '0.5' - }, - { - label : '25%', - value : '0.25' - }, - { - label : '10%', - value : '0.10' - }, - { - label : '0%', - value : '0' - } - ] - }, - - label_separator : { - type : 'separator', - title : 'Label settings' - }, - - label_type : { - title : 'Donut label', - info : 'What would you like to show for each slice?', - type : 'select', - init : 'percent', - data : [ - { - label : '-- Nothing --', - value : 'hide', - hide : 'label_outside' - }, - { - label : 'Label column', - value : 'key', - show : 'label_outside' - }, - { - label : 'Value column', - value : 'value', - show : 'label_outside' - }, - { - label : 'Percentage', - value : 'percent', - show : 'label_outside' - } - ], - }, - - label_outside : { - title : 'Show outside', - info : 'Would you like to show labels outside the donut?', - type : 'select', - init : 'false', - data : [ - { - label : 'Yes', - value : 'true' - }, - { - label : 'No', - value : 'false' - } - ] - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/pie/logo.png Binary file config/plugins/visualizations/charts/static/charts/highcharts/pie/logo.png has changed diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/pie/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/pie/wrapper.js +++ /dev/null @@ -1,20 +0,0 @@ -// dependencies -define(['plugin/charts/highcharts/common/wrapper'], function(Highcharts) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, chart, request_dictionary) { - var hc = new Highcharts(this.app, this.options); - hc.draw(process_id, 'pie', chart, request_dictionary); - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/scatter/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/scatter/config.js +++ /dev/null @@ -1,19 +0,0 @@ -define(['plugin/charts/highcharts/common/config'], function(config) { - -return $.extend(true, {}, config, { - title : 'Scatter plot', - category : 'Others', - keywords : 'highcharts', - columns : { - x : { - title : 'Values for x-axis', - is_numeric : true - }, - y : { - title : 'Values for y-axis', - is_numeric : true - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/scatter/logo.png Binary file config/plugins/visualizations/charts/static/charts/highcharts/scatter/logo.png has changed diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/scatter/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/scatter/wrapper.js +++ /dev/null @@ -1,20 +0,0 @@ -// dependencies -define(['plugin/charts/highcharts/common/wrapper'], function(Highcharts) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, chart, request_dictionary) { - var hc = new Highcharts(this.app, this.options); - hc.draw(process_id, 'scatter', chart, request_dictionary); - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/stackedarea/config.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/stackedarea/config.js +++ /dev/null @@ -1,21 +0,0 @@ -define(['plugin/charts/highcharts/common/config'], function(config) { - -return $.extend(true, {}, config, { - title : 'Regular', - category : 'Area charts', - keywords : 'highcharts', - columns : { - x : { - title : 'Values for x-axis', - is_label : true, - is_auto : true, - is_numeric : false - }, - y : { - title : 'Values for y-axis', - is_numeric : true - } - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/stackedarea/logo.png Binary file config/plugins/visualizations/charts/static/charts/highcharts/stackedarea/logo.png has changed diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/highcharts/stackedarea/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/highcharts/stackedarea/wrapper.js +++ /dev/null @@ -1,20 +0,0 @@ -// dependencies -define(['plugin/charts/highcharts/common/wrapper'], function(Highcharts) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) { - this.app = app; - this.options = options; - }, - - // render - draw : function(process_id, chart, request_dictionary) { - var hc = new Highcharts(this.app, this.options); - hc.draw(process_id, 'area', chart, request_dictionary); - } -}); - -}); \ No newline at end of file diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/bar/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/bar/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/bar/wrapper.js @@ -14,7 +14,7 @@ draw : function(process_id, chart, request_dictionary) { var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(process_id, nv.models.multiBarChart(), chart, request_dictionary); + nvd3.draw('multiBarChart', process_id, chart, request_dictionary); } }); diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal/wrapper.js @@ -14,7 +14,7 @@ draw : function(process_id, chart, request_dictionary) { var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(process_id, nv.models.multiBarHorizontalChart(), chart, request_dictionary); + nvd3.draw('multiBarHorizontalChart', process_id, chart, request_dictionary); } }); diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal_stacked/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal_stacked/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal_stacked/wrapper.js @@ -14,7 +14,7 @@ draw : function(process_id, chart, request_dictionary) { var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(process_id, nv.models.multiBarHorizontalChart(), chart, request_dictionary, function(nvd3_model) { + nvd3.draw('multiBarHorizontalChart', process_id, chart, request_dictionary, function(nvd3_model) { nvd3_model.stacked(true); }); } diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/bar_stacked/config.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/bar_stacked/config.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/bar_stacked/config.js @@ -4,6 +4,11 @@ title : 'Stacked', category : 'Bar diagrams', columns : { + x : { + title : 'Values for x-axis', + is_label : true, + is_auto : true + }, y : { title : 'Values for y-axis', is_numeric : true diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/bar_stacked/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/bar_stacked/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/bar_stacked/wrapper.js @@ -14,7 +14,7 @@ draw : function(process_id, chart, request_dictionary) { var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(process_id, nv.models.multiBarChart(), chart, request_dictionary, function(nvd3_model) { + nvd3.draw('multiBarChart', process_id, chart, request_dictionary, function(nvd3_model) { nvd3_model.stacked(true); }); } diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/common/config.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/common/config.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/common/config.js @@ -210,6 +210,22 @@ value : 'false' } ] + }, + use_panels : { + title : 'Use multi-panels', + info : 'Would you like to separate your data into individual panels?', + type : 'radiobutton', + init : 'false', + data : [ + { + label : 'Yes', + value : 'true' + }, + { + label : 'No', + value : 'false' + } + ] } } }; diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js @@ -1,5 +1,5 @@ // dependencies -define([], function() { +define(['plugin/charts/tools', 'plugin/plugins/nvd3/nv.d3'], function(Tools) { // widget return Backbone.View.extend( @@ -9,58 +9,75 @@ this.app = app; this.options = options; }, - + // render - draw : function(process_id, nvd3_model, chart, request_dictionary, callback) + draw : function(type, process_id, chart, request_dictionary, callback) { + var self = this; + var plot = Tools.panelHelper({ + app : this.app, + process_id : process_id, + canvas : this.options.canvas, + chart : chart, + request_dictionary : request_dictionary, + render : function(chart, groups, canvas) { + return self.render(type, chart, groups, canvas, callback) + } + }); + }, + + // render + render : function(type, chart, groups, canvas, callback) { + // create nvd3 model + var d3chart = nv.models[type](); + // request data var self = this; - this.app.datasets.request(request_dictionary, function() { - nv.addGraph(function() { + nv.addGraph(function() { + try { // x axis - self._axis(nvd3_model.xAxis, chart.settings.get('x_axis_type'), chart.settings.get('x_axis_tick')); + self._axis(d3chart.xAxis, chart.settings.get('x_axis_type'), chart.settings.get('x_axis_tick')); // x axis label - nvd3_model.xAxis.axisLabel(chart.settings.get('x_axis_label')); + d3chart.xAxis.axisLabel(chart.settings.get('x_axis_label')); // y axis - self._axis(nvd3_model.yAxis, chart.settings.get('y_axis_type'), chart.settings.get('y_axis_tick')); + self._axis(d3chart.yAxis, chart.settings.get('y_axis_type'), chart.settings.get('y_axis_tick')); // y axis label - nvd3_model.yAxis.axisLabel(chart.settings.get('y_axis_label')) + d3chart.yAxis.axisLabel(chart.settings.get('y_axis_label')) .axisLabelDistance(30); // controls - nvd3_model.options({showControls: false}); + d3chart.options({showControls: false}); // legend - if (nvd3_model.showLegend) { + if (d3chart.showLegend) { var legend_visible = true; if (chart.settings.get('show_legend') == 'false') { legend_visible = false; } - nvd3_model.showLegend(legend_visible); + d3chart.showLegend(legend_visible); } // custom callback if (callback) { - callback(nvd3_model); + callback(d3chart); } // parse data to canvas - self.options.canvas[0].datum(request_dictionary.groups) - .call(nvd3_model); + canvas.datum(groups) + .call(d3chart); + // refresh on window resize - nv.utils.windowResize(nvd3_model.update); - - // set chart state - chart.state('ok', 'Chart has been drawn.'); - - // unregister process - chart.deferred.done(process_id); - }); + nv.utils.windowResize(d3chart.update); + } catch (err) { + self._handleError(chart, err); + } }); + + return true; }, // make axis @@ -74,6 +91,11 @@ default: axis.tickFormat(d3.format(tick + type)); } + }, + + // handle error + _handleError: function(chart, err) { + chart.state('failed', err); } }); diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js @@ -32,7 +32,7 @@ // load nvd3 var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(process_id, nv.models.multiBarChart(), chart, request_dictionary, function(nvd3_model) { + nvd3.draw('multiBarChart', process_id, chart, request_dictionary, function(nvd3_model) { nvd3_model.options({showControls: true}); }); } diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/wrapper.js @@ -39,7 +39,7 @@ // draw var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(process_id, nv.models.multiBarChart(), chart, tmp_dict, function(nvd3_model) { + nvd3.draw('multiBarChart', process_id, chart, tmp_dict, function(nvd3_model) { nvd3_model.options({showControls: false}); }); } diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/line/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/line/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/line/wrapper.js @@ -14,7 +14,7 @@ draw : function(process_id, chart, request_dictionary) { var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(process_id, nv.models.lineChart(), chart, request_dictionary); + nvd3.draw('lineChart', process_id, chart, request_dictionary); } }); diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/line_focus/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/line_focus/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/line_focus/wrapper.js @@ -14,7 +14,7 @@ draw : function(process_id, chart, request_dictionary) { var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(process_id, nv.models.lineWithFocusChart(), chart, request_dictionary); + nvd3.draw('lineWithFocusChart', process_id, chart, request_dictionary); } }); diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/scatter/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/scatter/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/scatter/wrapper.js @@ -14,7 +14,7 @@ draw : function(process_id, chart, request_dictionary) { var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(process_id, nv.models.scatterChart(), chart, request_dictionary, function(nvd3_model) { + nvd3.draw('scatterChart', process_id, chart, request_dictionary, function(nvd3_model) { nvd3_model.showDistX(true) .showDistY(true) .color(d3.scale.category10().range()); diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/stackedarea/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/stackedarea/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/stackedarea/wrapper.js @@ -14,7 +14,7 @@ draw : function(process_id, chart, request_dictionary) { var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(process_id, nv.models.stackedAreaChart(), chart, request_dictionary, function(nvd3_model) { + nvd3.draw('stackedAreaChart', process_id, chart, request_dictionary, function(nvd3_model) { // make plot nvd3_model.x(function(d) { return d.x }) .y(function(d) { return d.y }) diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_full/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_full/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_full/wrapper.js @@ -14,7 +14,7 @@ draw : function(process_id, chart, request_dictionary) { var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(process_id, nv.models.stackedAreaChart(), chart, request_dictionary, function(nvd3_model) { + nvd3.draw('stackedAreaChart', process_id, chart, request_dictionary, function(nvd3_model) { // make plot nvd3_model.x(function(d) { return d.x }) .y(function(d) { return d.y }) diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_stream/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_stream/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_stream/wrapper.js @@ -14,7 +14,7 @@ draw : function(process_id, chart, request_dictionary) { var nvd3 = new NVD3(this.app, this.options); - nvd3.draw(process_id, nv.models.stackedAreaChart(), chart, request_dictionary, function(nvd3_model) { + nvd3.draw('stackedAreaChart', process_id, chart, request_dictionary, function(nvd3_model) { // make plot nvd3_model.x(function(d) { return d.x }) .y(function(d) { return d.y }) diff -r 84a00e4f7d06e9adcec7297d8133ce70524dc242 -r a932242dc2da4fd532c640006aa2ae4d35a7d72b config/plugins/visualizations/charts/static/charts/tools.js --- /dev/null +++ b/config/plugins/visualizations/charts/static/charts/tools.js @@ -0,0 +1,137 @@ +// dependencies +define(['utils/utils'], function(Utils) { + +// render +function panelHelper (options) +{ + // require parameters + var process_id = options.process_id; + var chart = options.chart; + var request_dictionary = options.request_dictionary; + var render = options.render; + var canvas = options.canvas; + var app = options.app; + + // request data + var self = this; + app.datasets.request(request_dictionary, function() { + try { + // check if this chart has multiple panels + if (!chart.definition.use_panels && chart.settings.get('use_panels') !== 'true') { + // draw all groups into a single panel + if (render(chart, request_dictionary.groups, canvas[0])) { + chart.state('ok', 'Chart drawn.'); + } + } else { + // draw groups in separate panels + var valid = true; + for (var group_index in request_dictionary.groups) { + var group = request_dictionary.groups[group_index]; + if (!render(chart, [group], canvas[group_index])) { + valid = false; + break; + } + } + if (valid) { + chart.state('ok', 'Multi-panel chart drawn.'); + } + } + + // unregister process + chart.deferred.done(process_id); + } catch (err) { + // log + console.debug('FAILED: Tools::draw() - ' + err); + + // set chart state + chart.state('failed', err); + + // unregister process + chart.deferred.done(process_id); + } + }); +}; + +// series maker +function makeSeries(group) { + // reset data + var data = []; + + // format chart data + for (var value_index in group.values) { + // parse data + var point = []; + for (var column_index in group.values[value_index]) { + point.push(group.values[value_index][column_index]); + } + + // add to data + data.push (point); + } + + // return + return data; +}; + +// category maker +function makeCategories(chart, groups) { + // hashkeys, arrays and counter for labeled columns + var categories = {}; + var array = {}; + var counter = {}; + + // identify label columns + var chart_definition = groups[0]; + for (var key in chart_definition.columns) { + var column_def = chart_definition.columns[key]; + if (column_def.is_label) { + categories[key] = {}; + array[key] = []; + counter[key] = 0; + } + } + + // index all values contained in label columns (for all groups) + for (var i in groups) { + var group = groups[i]; + for (var j in group.values) { + var value_dict = group.values[j]; + for (var key in categories) { + var value = String(value_dict[key]); + if (categories[key][value] === undefined) { + categories[key][value] = counter[key]; + array[key].push([counter[key], value]); + counter[key]++; + } + } + } + } + + // convert group values into category indeces + for (var i in groups) { + var group = groups[i]; + for (var j in group.values) { + var value_dict = group.values[j]; + for (var key in categories) { + var value = String(value_dict[key]); + value_dict[key] = categories[key][value] + } + } + } + + // return dictionary + return { + categories : categories, + array : array, + counter : counter + } +}; + +// return +return { + panelHelper : panelHelper, + makeCategories : makeCategories, + makeSeries : makeSeries +} + +}); \ No newline at end of file This diff is so big that we needed to truncate the remainder. 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