Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 81864e9713e63b3478a3e8ec8ed672516b2c6853 https://github.com/galaxyproject/galaxy/commit/81864e9713e63b3478a3e8ec8ed67... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-13 (Wed, 13 Jun 2018) Changed paths: M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt Log Message: ----------- Update dependencies to versions with Python3 manylinux wheels on PyPI Commit: d66a63012af8f538572458650d47801a5d2cd396 https://github.com/galaxyproject/galaxy/commit/d66a63012af8f538572458650d478... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-13 (Wed, 13 Jun 2018) Changed paths: M config/galaxy.yml.sample M config/tool_shed.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/datatypes/display_applications/util.py M lib/galaxy/dependencies/pipfiles/default/Pipfile M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt M lib/galaxy/dependencies/pipfiles/flake8/Pipfile.lock M lib/galaxy/web/security/__init__.py M lib/galaxy/webapps/galaxy/config_schema.yml M scripts/api/common.py M test/unit/test_security_helper.py M test/unit/unittest_utils/galaxy_mock.py Log Message: ----------- Replace unmaintained pycrypto dependency with pycryptodome Minimum secret key length for Blowfish was increased from 4 to 5 bytes. First argument to Blowfish.new() must be a bytestring, and the `mode` argument is no more optional. Remove unused `encode_id` function from `scripts/api/common.py` . Documentation updated, then rebuilt with `make config-rebuild` . Commit: 39b70d7193c223e4013391afcb90cc932f7ac650 https://github.com/galaxyproject/galaxy/commit/39b70d7193c223e4013391afcb90c... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-13 (Wed, 13 Jun 2018) Changed paths: M lib/tool_shed/util/common_util.py M lib/tool_shed/util/encoding_util.py Log Message: ----------- Python3 Unicode/binary fixes Commit: cffeb6edc8b72534385d6aa5e978d25cb20b5479 https://github.com/galaxyproject/galaxy/commit/cffeb6edc8b72534385d6aa5e978d... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2018-06-13 (Wed, 13 Jun 2018) Changed paths: M lib/tool_shed/util/hg_util.py Log Message: ----------- Move mercurial imports inside the functions that use them Because Galaxy under Python3 would fail otherwise. Commit: 6120183182bf643b6abb995283c7798da71f0211 https://github.com/galaxyproject/galaxy/commit/6120183182bf643b6abb995283c77... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2018-06-13 (Wed, 13 Jun 2018) Changed paths: M scripts/check_python.py Log Message: ----------- Allow Python 3 if in a virtualenv Commit: 594daa85bf5de0acfb0a76aeea8cb55d7aa4684a https://github.com/galaxyproject/galaxy/commit/594daa85bf5de0acfb0a76aeea8cb... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-13 (Wed, 13 Jun 2018) Changed paths: M .travis.yml M tox.ini Log Message: ----------- Add py34-first_startup to Travis and default tox tests. Commit: f8bc0656f9cf5336cac667b1be46ad2bb5bfb7ff https://github.com/galaxyproject/galaxy/commit/f8bc0656f9cf5336cac667b1be46a... Author: John Chilton <jmchilton@gmail.com> Date: 2018-06-13 (Wed, 13 Jun 2018) Changed paths: M .travis.yml M config/galaxy.yml.sample M config/tool_shed.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/datatypes/display_applications/util.py M lib/galaxy/dependencies/pipfiles/default/Pipfile M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt M lib/galaxy/dependencies/pipfiles/flake8/Pipfile.lock M lib/galaxy/web/security/__init__.py M lib/galaxy/webapps/galaxy/config_schema.yml M lib/tool_shed/util/common_util.py M lib/tool_shed/util/encoding_util.py M lib/tool_shed/util/hg_util.py M scripts/api/common.py M scripts/check_python.py M test/unit/test_security_helper.py M test/unit/unittest_utils/galaxy_mock.py M tox.ini Log Message: ----------- Merge pull request #6325 from mvdbeek/py3_fixes2 Add py34-first_startup to Travis and default tox tests Compare: https://github.com/galaxyproject/galaxy/compare/b5214867c9ff...f8bc0656f9cf **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.