1 new changeset in galaxy-central: http://bitbucket.org/galaxy/galaxy-central/changeset/86b7fa44549c/ changeset: r5196:86b7fa44549c user: natefoo date: 2011-03-08 17:17:57 summary: An uninitialized value in R's PDF driver was causing it to sometimes randomly add a few elements to PDF outputs. The bug has been fixed in the buildbot environment and these changes account for that fix. affected #: 17 files (728 bytes) --- a/test-data/peakcalling_macs/test2/Galaxy_Test_Run_model.pdf Tue Mar 08 10:26:52 2011 -0500 +++ b/test-data/peakcalling_macs/test2/Galaxy_Test_Run_model.pdf Tue Mar 08 11:17:57 2011 -0500 @@ -28,7 +28,7 @@ \/Length\ 7\ 0\ R \>\> stream -q +[1Jj ]*q Q\ q\ 59\.04\ 73\.44\ 342\.72\ 299\.52\ re\ W\ n 1\.000\ 0\.000\ 0\.000\ RG 0\.75\ w @@ -3759,7 +3759,7 @@ endstream endobj 7\ 0\ obj -59450 +5945[0-9] endobj 3\ 0\ obj \<\< --- a/test/base/twilltestcase.py Tue Mar 08 10:26:52 2011 -0500 +++ b/test/base/twilltestcase.py Tue Mar 08 11:17:57 2011 -0500 @@ -75,7 +75,7 @@ # PDF files contain creation dates, modification dates, ids and descriptions that change with each # new file, so we need to handle these differences. As long as the rest of the PDF file does # not differ we're ok. - valid_diff_strs = [ 'description', 'createdate', 'creationdate', 'moddate', 'id', 'producer', 'creator', 'extgstate', 'ais' ] + valid_diff_strs = [ 'description', 'createdate', 'creationdate', 'moddate', 'id', 'producer', 'creator' ] valid_diff = False invalid_diff_lines = 0 for line in diff_slice: --- a/tools/multivariate_stats/cca.xml Tue Mar 08 10:26:52 2011 -0500 +++ b/tools/multivariate_stats/cca.xml Tue Mar 08 11:17:57 2011 -0500 @@ -52,7 +52,7 @@ <param name="y_scale" value="scale"/><param name="std_scores" value="yes"/><output name="out_file1" file="cca_out1.tabular"/> - <output name="out_file2" file="cca_out2.pdf" lines_diff="6"/> + <output name="out_file2" file="cca_out2.pdf"/></test></tests><help> --- a/tools/multivariate_stats/kpca.xml Tue Mar 08 10:26:52 2011 -0500 +++ b/tools/multivariate_stats/kpca.xml Tue Mar 08 11:17:57 2011 -0500 @@ -108,7 +108,7 @@ <param name="scale" value="1"/><param name="degree" value="2"/><output name="out_file1" file="kpca_out1.tabular"/> - <output name="out_file2" file="kpca_out2.pdf" lines_diff="6"/> + <output name="out_file2" file="kpca_out2.pdf"/></test></tests><help> --- a/tools/multivariate_stats/pca.xml Tue Mar 08 10:26:52 2011 -0500 +++ b/tools/multivariate_stats/pca.xml Tue Mar 08 11:17:57 2011 -0500 @@ -47,14 +47,14 @@ <param name="var_cols" value="1,2,3,4"/><param name="method" value="cor"/><output name="out_file1" file="pca_out1.tabular"/> - <output name="out_file2" file="pca_out2.pdf" lines_diff="6"/> + <output name="out_file2" file="pca_out2.pdf"/></test><test><param name="input1" value="iris.tabular"/><param name="var_cols" value="1,2,3,4"/><param name="method" value="cov"/><output name="out_file1" file="pca_out3.tabular"/> - <output name="out_file2" file="pca_out4.pdf" lines_diff="6"/> + <output name="out_file2" file="pca_out4.pdf"/></test><test><param name="input1" value="iris.tabular"/> @@ -62,7 +62,7 @@ <param name="method" value="svd"/><param name="scale" value="both"/><output name="out_file1" file="pca_out5.tabular"/> - <output name="out_file2" file="pca_out6.pdf" lines_diff="6"/> + <output name="out_file2" file="pca_out6.pdf"/></test></tests><help> --- a/tools/plotting/histogram2.xml Tue Mar 08 10:26:52 2011 -0500 +++ b/tools/plotting/histogram2.xml Tue Mar 08 11:17:57 2011 -0500 @@ -22,7 +22,7 @@ <param name="xlab" value="V1"/><param name="density" value="true"/><param name="frequency" value="false"/> - <output name="out_file1" file="histogram_out1.pdf" lines_diff="6" /> + <output name="out_file1" file="histogram_out1.pdf"/></test></tests><requirements> --- a/tools/regVariation/draw_stacked_barplots.xml Tue Mar 08 10:26:52 2011 -0500 +++ b/tools/regVariation/draw_stacked_barplots.xml Tue Mar 08 11:17:57 2011 -0500 @@ -16,7 +16,7 @@ <tests><test><param name="inputFile1" value="categories_criteria.tabular" /> - <output name="outputFile1" file="statcked_bars_plot.pdf" /> + <output name="outputFile1" file="stacked_barplot.pdf" /></test></tests> --- a/tools/regVariation/linear_regression.xml Tue Mar 08 10:26:52 2011 -0500 +++ b/tools/regVariation/linear_regression.xml Tue Mar 08 11:17:57 2011 -0500 @@ -29,7 +29,7 @@ <param name="response_col" value="3"/><param name="predictor_cols" value="1,2"/><output name="out_file1" file="regr_out.tabular"/> - <output name="out_file2" file="regr_out.pdf" lines_diff="6"/> + <output name="out_file2" file="regr_out.pdf"/></test></tests><help> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.