Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6c32edebc1b36136759a055fe3032d51a24f1f68 https://github.com/galaxyproject/galaxy/commit/6c32edebc1b36136759a055fe3032... Author: Evgeny Anatskiy evgeny.anatskiy@gmail.com Date: 2017-10-17 (Tue, 17 Oct 2017)
Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-base.js M static/maps/mvc/tool/tool-form-base.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-base.js A test/selenium_tests/test_tool_describing_tours.py
Log Message: ----------- start writing tests for TDT
Commit: 7431cb13123f091fc13d5cb2b2756a4bd0726d1f https://github.com/galaxyproject/galaxy/commit/7431cb13123f091fc13d5cb2b2756... Author: Evgeny Anatskiy evgeny.anatskiy@gmail.com Date: 2017-10-17 (Tue, 17 Oct 2017)
Changed paths: M config/plugins/webhooks/demo/tour_generator/static/script.js
Log Message: ----------- fix TDT's dependency
Commit: b0973391640248f29765bacdc0ff0faf68db5f52 https://github.com/galaxyproject/galaxy/commit/b0973391640248f29765bacdc0ff0... Author: Evgeny Anatskiy evgeny.anatskiy@gmail.com Date: 2017-10-17 (Tue, 17 Oct 2017)
Changed paths: M test/selenium_tests/test_tool_describing_tours.py
Log Message: ----------- test successful tour generation
Commit: 9d646c605cbab0c59e34379818e2e63f7269e5b6 https://github.com/galaxyproject/galaxy/commit/9d646c605cbab0c59e34379818e2e... Author: Evgeny Anatskiy evgeny.anatskiy@gmail.com Date: 2017-11-01 (Wed, 01 Nov 2017)
Changed paths: M test/selenium_tests/test_tool_describing_tours.py
Log Message: ----------- improve the test
Commit: 323e1ad64e9f3fa75c32a283b82694474d49ceb0 https://github.com/galaxyproject/galaxy/commit/323e1ad64e9f3fa75c32a283b8269... Author: Evgeny Anatskiy evgeny.anatskiy@gmail.com Date: 2017-11-01 (Wed, 01 Nov 2017)
Changed paths: M .ci/flake8_lint_include_list.txt R .ci/flake8_py3_wrapper.sh M .ci/jenkins/selenium/Dockerfile M .ci/jenkins/selenium/docker-compose.yml M .ci/jenkins/selenium/galaxy.ini M .ci/jenkins/selenium/run_galaxy.bash M .ci/jenkins/selenium/run_tests.sh M .ci/py3_sources.txt A .ci/tox_envs/flake8/Pipfile A .ci/tox_envs/flake8/requirements.txt A .ci/tox_envs/flake8_imports/Pipfile A .ci/tox_envs/flake8_imports/requirements.txt A .ci/tox_envs/update.sh M .gitignore M .travis.yml M CITATION M Makefile A client/.babelrc M client/GruntFile.js M client/README.md M client/bower.json M client/galaxy/scripts/admin.toolshed.js M client/galaxy/scripts/apps/admin.js M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/login.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/apps/panels/history-panel.js M client/galaxy/scripts/apps/panels/tool-panel.js M client/galaxy/scripts/galaxy.interactive_environments.js M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/galaxy.library.js M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/i18n.js M client/galaxy/scripts/layout/generic-nav-view.js M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/modal.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/layout/panel.js M client/galaxy/scripts/layout/router.js M client/galaxy/scripts/layout/scratchbook.js R client/galaxy/scripts/libs/backbone.js R client/galaxy/scripts/libs/bibtex.js R client/galaxy/scripts/libs/d3.js R client/galaxy/scripts/libs/jquery.complexify.js R client/galaxy/scripts/libs/jquery/jquery.cookie.js R client/galaxy/scripts/libs/jquery/jquery.js R client/galaxy/scripts/libs/jquery/jquery.migrate.js R client/galaxy/scripts/libs/jquery/jquery.mousewheel.js R client/galaxy/scripts/libs/raven.js R client/galaxy/scripts/libs/require.js R client/galaxy/scripts/libs/underscore.js M client/galaxy/scripts/mvc/annotation.js M 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tools/data_source/import.py M tools/data_source/microbial_import.py M tools/data_source/microbial_import_code.py M tools/data_source/upload.py M tools/data_source/upload.xml M tools/evolution/codingSnps_filter.py M tools/extract/extract_genomic_dna.py M tools/extract/liftOver_wrapper.py M tools/extract/liftOver_wrapper.xml M tools/filters/axt_to_lav.py M tools/filters/bed_to_gff_converter.py M tools/filters/catWrapper.py M tools/filters/convert_characters.py M tools/filters/gff/extract_GFF_Features.py M tools/filters/gff/gff_filter_by_attribute.py M tools/filters/gff/gff_filter_by_feature_count.py M tools/filters/gff_to_bed_converter.py M tools/filters/gtf_to_bedgraph_converter.py M tools/filters/join.py M tools/filters/lav_to_bed_code.py M tools/filters/mergeCols.py M tools/filters/sff_extract.py M tools/filters/ucsc_gene_bed_to_exon_bed.py M tools/filters/ucsc_gene_bed_to_exon_bed.xml M tools/filters/ucsc_gene_bed_to_intron_bed.py M tools/filters/ucsc_gene_table_to_intervals.py M tools/genomespace/genomespace_importer.py M tools/maf/maf_by_block_number.py M tools/maf/maf_filter.py M tools/maf/maf_limit_size.py M tools/maf/maf_limit_to_species.py M tools/maf/maf_reverse_complement.py M tools/maf/maf_stats.py M tools/maf/maf_thread_for_species.py M tools/maf/maf_to_bed.py M tools/maf/vcf_to_maf_customtrack.py M tools/metag_tools/blat_wrapper.py M tools/metag_tools/shrimp_color_wrapper.py M tools/metag_tools/shrimp_wrapper.py M tools/next_gen_conversion/solid2fastq.py M tools/plotting/bar_chart.py M tools/solid_tools/maq_cs_wrapper.py M tools/solid_tools/solid_qual_stats.py M tools/sr_assembly/velvetg_wrapper.py M tools/sr_mapping/bfast_wrapper.py M tools/stats/aggregate_scores_in_intervals.py M tools/stats/filtering.py M tools/stats/grouping.py M tools/stats/gsummary.py M tox.ini
Log Message: ----------- Merge branch 'dev' into tdt_tests
# Conflicts: # client/galaxy/scripts/mvc/tool/tool-form-base.js # static/maps/mvc/tool/tool-form-base.js.map # static/scripts/bundled/analysis.bundled.js # static/scripts/bundled/analysis.bundled.js.map # static/scripts/bundled/libs.bundled.js.map # static/scripts/mvc/tool/tool-form-base.js
Commit: f419c85955dc9885ef09f77db7e10e5145ef99fd https://github.com/galaxyproject/galaxy/commit/f419c85955dc9885ef09f77db7e10... Author: Evgeny Anatskiy evgeny.anatskiy@gmail.com Date: 2017-11-01 (Wed, 01 Nov 2017)
Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-base.js M static/maps/mvc/tool/tool-form-base.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-base.js M test/selenium_tests/test_tool_describing_tours.py
Log Message: ----------- add test for TDT
Commit: c52ebfca26710b8c9883bbfdba04187d53295427 https://github.com/galaxyproject/galaxy/commit/c52ebfca26710b8c9883bbfdba041... Author: John Chilton jmchilton@gmail.com Date: 2017-11-14 (Tue, 14 Nov 2017)
Changed paths: A test/functional/webhooks/tour_generator M test/galaxy_selenium/navigates_galaxy.py M test/galaxy_selenium/navigation.yml M test/selenium_tests/test_tool_describing_tours.py M test/selenium_tests/test_tool_form.py
Log Message: ----------- Improvements for tour generator Selenium tests.
- Replace test using Cut1 with two tests each using framework test tools loaded with Selenium tests by default. - Create a symbolic link so that tour generator is configured with default test webhooks. - Establish and use components and navigates_galaxy.py abstractions for tour generation and navigation. - In one of the tool tests actually walk the tour (previously we only verified the initial tour popover).
Commit: cecef90915abf0383aed8b56deb4ec237ca9a712 https://github.com/galaxyproject/galaxy/commit/cecef90915abf0383aed8b56deb4e... Author: John Chilton jmchilton@gmail.com Date: 2017-11-14 (Tue, 14 Nov 2017)
Changed paths: R .ci/flake8_lint_include_list.txt R .ci/flake8_wrapper_imports.sh A .ci/jenkins/selenium-compose/Dockerfile A .ci/jenkins/selenium-compose/docker-compose.yml A .ci/jenkins/selenium-compose/galaxy.ini A .ci/jenkins/selenium-compose/run_galaxy.bash A .ci/jenkins/selenium-compose/run_tests.sh R .ci/jenkins/selenium/Dockerfile R .ci/jenkins/selenium/docker-compose.yml R .ci/jenkins/selenium/galaxy.ini R .ci/jenkins/selenium/run_galaxy.bash M .ci/jenkins/selenium/run_tests.sh R .ci/tox_envs/flake8/Pipfile R .ci/tox_envs/flake8/requirements.txt R .ci/tox_envs/flake8_imports/Pipfile R .ci/tox_envs/flake8_imports/requirements.txt R .ci/tox_envs/update.sh M .travis.yml M Makefile M README.rst M client/.babelrc M client/galaxy/scripts/admin.toolshed.js M client/galaxy/scripts/apps/admin.js M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/login.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/apps/panels/history-panel.js M 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templates/webapps/galaxy/library/common/browse_library_opt.mako R templates/webapps/galaxy/library/common/common.mako R templates/webapps/galaxy/library/common/folder_info.mako R templates/webapps/galaxy/library/common/folder_permissions.mako R templates/webapps/galaxy/library/common/import_datasets_to_histories.mako R templates/webapps/galaxy/library/common/ldda_edit_info.mako R templates/webapps/galaxy/library/common/ldda_info.mako R templates/webapps/galaxy/library/common/ldda_permissions.mako R templates/webapps/galaxy/library/common/library_dataset_info.mako R templates/webapps/galaxy/library/common/library_dataset_permissions.mako R templates/webapps/galaxy/library/common/library_dataset_search_results.mako R templates/webapps/galaxy/library/common/library_info.mako R templates/webapps/galaxy/library/common/library_item_info.mako R templates/webapps/galaxy/library/common/library_permissions.mako R templates/webapps/galaxy/library/common/move_library_item.mako R templates/webapps/galaxy/library/common/new_folder.mako R templates/webapps/galaxy/library/common/upload.mako R templates/webapps/galaxy/library/grid.mako R templates/webapps/galaxy/library/index.mako M templates/webapps/galaxy/page/editor.mako M templates/webapps/galaxy/visualization/display.mako M templates/webapps/galaxy/visualization/phyloviz.mako M templates/webapps/galaxy/visualization/sweepster.mako M templates/webapps/galaxy/workflow/editor.mako M templates/webapps/reports/run_stats.mako M templates/webapps/tool_shed/group/index.mako M test/api/test_dataset_collections.py M test/api/test_history_contents.py M test/api/test_jobs.py M test/api/test_page_revisions.py M test/api/test_tools_upload.py M test/base/driver_util.py M test/base/integration_util.py M test/base/populators.py M test/base/testcase.py M test/docker/base/Dockerfile M test/docker/base/run_test_wrapper.sh A test/docker/base/selenium/LICENSE A test/docker/base/selenium/README A test/docker/base/selenium/entry_point.sh A test/docker/base/selenium/functions.sh A test/docker/base/selenium/generate_config A test/docker/base/selenium/wrap_chrome_binary M test/functional/test_toolbox.py M test/galaxy_selenium/components.py M test/galaxy_selenium/data.py M test/galaxy_selenium/driver_factory.py M test/galaxy_selenium/navigates_galaxy.py M test/manual/workflows_scaling.py M test/qunit/test-app.js M test/qunit/tests/form_tests.js M test/qunit/tests/galaxy-app-base.js M test/qunit/tests/graph.js M test/qunit/tests/hda-base.js M test/qunit/tests/history_contents_model_tests.js M test/qunit/tests/job-dag.js M test/qunit/tests/list-of-pairs-collection-creator.js M test/qunit/tests/masthead_tests.js M test/qunit/tests/metrics-logger.js M test/qunit/tests/modal_tests.js M test/qunit/tests/page_tests.js M test/qunit/tests/popover_tests.js M test/qunit/tests/ui_tests.js M test/qunit/tests/upload_dialog_tests.js M test/qunit/tests/utils_test.js M 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test/unit/jobs/dynamic_tool_destination/test_dynamic_tool_destination.py M test/unit/jobs/test_job_wrapper.py M test/unit/jobs/test_mapper.py M test/unit/jobs/test_runner_local.py M test/unit/managers/base.py M test/unit/managers/test_CollectionManager.py M test/unit/managers/test_DatasetManager.py M test/unit/managers/test_HDAManager.py M test/unit/managers/test_HDCAManager.py M test/unit/managers/test_HistoryContentsManager.py M test/unit/managers/test_HistoryManager.py M test/unit/managers/test_UserManager.py M test/unit/shed_unit/test_installed_repository_manager.py M test/unit/shed_unit/test_tool_panel_manager.py M test/unit/test_objectstore.py M test/unit/tools/test_actions.py M test/unit/tools/test_collect_primary_datasets.py M test/unit/tools/test_column_parameters.py M test/unit/tools/test_conda_resolution.py M test/unit/tools/test_data_parameters.py M test/unit/tools/test_dataset_matcher.py M test/unit/tools/test_evaluation.py M test/unit/tools/test_execution.py M test/unit/tools/test_history_imp_exp.py M test/unit/tools/test_parameter_parsing.py M test/unit/tools/test_parsing.py M test/unit/tools/test_select_parameters.py M test/unit/tools/test_tool_deps.py M test/unit/tools/test_tool_loader.py M test/unit/tools/test_toolbox.py M test/unit/tools/test_watcher.py M test/unit/tools_support.py M test/unit/visualizations/plugins/test_VisualizationPlugin.py M test/unit/visualizations/plugins/test_VisualizationsRegistry.py M test/unit/web/framework/test_webapp.py M test/unit/workflows/test_modules.py M test/unit/workflows/test_run_parameters.py M test/unit/workflows/test_workflow_progress.py M tools/filters/gff/gff_filter_by_attribute.py M tools/filters/gff/gff_filter_by_feature_count.py M tools/phenotype_association/senatag.py M tox.ini
Log Message: ----------- Merge remote-tracking branch 'jmchilton/dev' into tdt_tests
Commit: 9273d7a1c73df1aeb2271dcad6495d1b6fd4f036 https://github.com/galaxyproject/galaxy/commit/9273d7a1c73df1aeb2271dcad6495... Author: John Chilton jmchilton@gmail.com Date: 2017-11-14 (Tue, 14 Nov 2017)
Changed paths: M test/selenium_tests/test_tool_describing_tours.py
Log Message: ----------- Add screenshots for TDT Selenium tests.
Commit: fb91302458f1ab8c1d8dbd59ef0d7ebf29932536 https://github.com/galaxyproject/galaxy/commit/fb91302458f1ab8c1d8dbd59ef0d7... Author: John Chilton jmchilton@gmail.com Date: 2017-11-14 (Tue, 14 Nov 2017)
Changed paths: M config/plugins/webhooks/demo/tour_generator/static/script.js
Log Message: ----------- Fix TDT fors ES6 module switchover.
Commit: 54c6a794e9c6c3b5e51990875516e026cbac94c0 https://github.com/galaxyproject/galaxy/commit/54c6a794e9c6c3b5e51990875516e... Author: Dannon Baker dannon.baker@gmail.com Date: 2017-11-15 (Wed, 15 Nov 2017)
Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-base.js M config/plugins/webhooks/demo/tour_generator/static/script.js M static/maps/mvc/tool/tool-form-base.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-base.js A test/functional/webhooks/tour_generator M test/galaxy_selenium/navigates_galaxy.py M test/galaxy_selenium/navigation.yml A test/selenium_tests/test_tool_describing_tours.py M test/selenium_tests/test_tool_form.py
Log Message: ----------- Merge pull request #4909 from anatskiy/tdt_tests
Selenium test for Tool-Describing-Tours
Compare: https://github.com/galaxyproject/galaxy/compare/a12b50c08ecf...54c6a794e9c6