# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Dan Blankenberg <dan@bx.psu.edu> # Date 1287508435 14400 # Node ID 7c80b7c2aa6aef5fba1b3a08e6426f5c84a125b4 # Parent 9c80bcb0bfa49d553428aca22043a8a68f773c65 Add descriptive labels to output dataset names for MACS peakcalling tool. --- a/tools/peak_calling/macs_wrapper.xml +++ b/tools/peak_calling/macs_wrapper.xml @@ -74,22 +74,22 @@ <param name="futurefdr" label="Perform the new peak detection method (futurefdr)" type="boolean" truevalue="--futurefdr" falsevalue="" checked="False" help="The default method only consider the peak location, 1k, 5k, and 10k regions in the control data; whereas the new future method also consider the 5k, 10k regions in treatment data to calculate local bias."/></inputs><outputs> - <data name="output_bed_file" format="bed"/> - <data name="output_xls_to_interval_peaks_file" format="interval"> + <data name="output_bed_file" format="bed" label="${tool.name} on ${on_string} (peaks: bed)"/> + <data name="output_xls_to_interval_peaks_file" format="interval" label="${tool.name} on ${on_string} (peaks: interval)"><filter>xls_to_interval is True</filter></data> - <data name="output_xls_to_interval_negative_peaks_file" format="interval"> + <data name="output_xls_to_interval_negative_peaks_file" format="interval" label="${tool.name} on ${on_string} (negative peaks: interval)"><filter>xls_to_interval is True</filter><filter>input_type['input_control_file1'] is not None</filter></data> - <data name="output_treatment_wig_file" format="wig"> + <data name="output_treatment_wig_file" format="wig" label="${tool.name} on ${on_string} (treatment: wig)"><filter>wig_type['wig_type_selector']=='wig'</filter></data> - <data name="output_control_wig_file" format="wig"> + <data name="output_control_wig_file" format="wig" label="${tool.name} on ${on_string} (control: wig)"><filter>wig_type['wig_type_selector'] == 'wig'</filter><filter>input_type['input_control_file1'] is not None</filter></data> - <data name="output_extra_files" format="html"/> + <data name="output_extra_files" format="html" label="${tool.name} on ${on_string} (html report)"/></outputs><configfiles><configfile name="options_file"><%