Branch: refs/heads/release_18.05 Home: https://github.com/galaxyproject/galaxy Commit: 384a165aab2d579ee4c2dceba61f21c42c8c2dc4 https://github.com/galaxyproject/galaxy/commit/384a165aab2d579ee4c2dceba61f2... Author: Bjoern Gruening <bjoern.gruening@gmail.com> Date: 2018-04-19 (Thu, 19 Apr 2018) Changed paths: M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Allow schema to validate Commit: 0b95898ccf68b8497dff9f322b44abc5668dfce6 https://github.com/galaxyproject/galaxy/commit/0b95898ccf68b8497dff9f322b44a... Author: E Rasche <hxr@hx42.org> Date: 2018-05-01 (Tue, 01 May 2018) Changed paths: M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Document pbkdf2 Commit: 7eb0be96cf3dba5099f28fd001c5f2b87ddacf38 https://github.com/galaxyproject/galaxy/commit/7eb0be96cf3dba5099f28fd001c5f... Author: John Chilton <jmchilton@gmail.com> Date: 2018-08-08 (Wed, 08 Aug 2018) Changed paths: M lib/galaxy/config.py Log Message: ----------- Restore log_destination = stdout configuration option. Implementation in 17.09 was here https://github.com/galaxyproject/galaxy/blob/release_17.09/lib/galaxy/config.... This option set to stdout is used by the test framework output Galaxy logs to stdout. As far as I can tell log_destination was removed in 18.01 and the effect was to sort of default to stdout - but when we fixed log_destination for files and backported recently https://github.com/galaxyproject/galaxy/commit/bc95f2563601635cfa1daa686b3d5... - test output became written to a file called "stdout". This commit should restore the 17.09 behavior for both files and stdout configuration of this logging. Commit: 272c6b071d5c5db526cb3da8cc174dd4785a0d6e https://github.com/galaxyproject/galaxy/commit/272c6b071d5c5db526cb3da8cc174... Author: John Chilton <jmchilton@gmail.com> Date: 2018-08-08 (Wed, 08 Aug 2018) Changed paths: M test/api/test_workflows.py Log Message: ----------- Test case to clarify workflow API a bit in simple cases. Commit: 9874e5db0cbf1967a90d3ad74820af1790602981 https://github.com/galaxyproject/galaxy/commit/9874e5db0cbf1967a90d3ad74820a... Author: John Chilton <jmchilton@gmail.com> Date: 2018-08-08 (Wed, 08 Aug 2018) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Allow uniform access to job state for WorkflowInvocationSteps. Use the concept of job_source_type and job_source_id used by IDs to summarize the state and list out individual jobs in the response as a shortcut. This information used to be readily accessible before 18.01. Commit: b878835ea388cc7ea15c0bf9d56738732d44b8e2 https://github.com/galaxyproject/galaxy/commit/b878835ea388cc7ea15c0bf9d5673... Author: John Chilton <jmchilton@gmail.com> Date: 2018-08-08 (Wed, 08 Aug 2018) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/webapps/galaxy/api/workflows.py M test/api/test_workflows.py Log Message: ----------- Add a legacy_job_state mode to restore 17.09 workflow invocation behavior. Commit: 3efda23b4fe84f1a61d83aba07186e46c81990ce https://github.com/galaxyproject/galaxy/commit/3efda23b4fe84f1a61d83aba07186... Author: John Chilton <jmchilton@gmail.com> Date: 2018-09-07 (Fri, 07 Sep 2018) Changed paths: M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Restore logging block in galaxy config schema. Commit: 7d7a875af398c440040e78dcc2516aae1c6eb041 https://github.com/galaxyproject/galaxy/commit/7d7a875af398c440040e78dcc2516... Author: Dannon <dannon.baker@gmail.com> Date: 2018-09-07 (Fri, 07 Sep 2018) Changed paths: M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge pull request #5919 from erasche/fix-config-validate [18.01] Allow schema to validate Commit: 71b561512db9819b68f9685d3e43317ba43790b2 https://github.com/galaxyproject/galaxy/commit/71b561512db9819b68f9685d3e433... Author: Dannon <dannon.baker@gmail.com> Date: 2018-09-26 (Wed, 26 Sep 2018) Changed paths: M lib/galaxy/config.py M lib/galaxy/model/__init__.py M lib/galaxy/webapps/galaxy/api/workflows.py M test/api/test_workflows.py Log Message: ----------- Merge pull request #6559 from jmchilton/wf_api_legacy [18.01] Restore the ability to track jobs for a WF invocation step. Commit: cf62a1dafd90df9b65f811bed74d1d173542babc https://github.com/galaxyproject/galaxy/commit/cf62a1dafd90df9b65f811bed74d1... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-09-26 (Wed, 26 Sep 2018) Changed paths: M lib/galaxy/config.py M lib/galaxy/model/__init__.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/config_schema.yml M test/api/test_workflows.py Log Message: ----------- Merge remote-tracking branch 'upstream/release_18.01' into release_18.05 Compare: https://github.com/galaxyproject/galaxy/compare/5a97e4fcea77...cf62a1dafd90 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.