1 new changeset in galaxy-central: http://bitbucket.org/galaxy/galaxy-central/changeset/25a02a5c286f/ changeset: r5146:25a02a5c286f user: dan date: 2011-02-28 21:17:35 summary: Remove unused parameters from TopHat and Cufflinks tool tests. affected #: 2 files (171 bytes) --- a/tools/ngs_rna/cufflinks_wrapper.xml Mon Feb 28 15:03:45 2011 -0500 +++ b/tools/ngs_rna/cufflinks_wrapper.xml Mon Feb 28 15:17:35 2011 -0500 @@ -105,7 +105,6 @@ <test><param name="sPaired" value="No"/><param name="input" value="cufflinks_in.sam"/> - <param name="mean_inner_distance" value="20"/><param name="max_intron_len" value="300000"/><param name="min_isoform_fraction" value="0.05"/><param name="pre_mrna_fraction" value="0.05"/> --- a/tools/ngs_rna/tophat_wrapper.xml Mon Feb 28 15:03:45 2011 -0500 +++ b/tools/ngs_rna/tophat_wrapper.xml Mon Feb 28 15:17:35 2011 -0500 @@ -448,7 +448,6 @@ <param name="splice_mismatches" value="0"/><param name="min_intron_length" value="70"/><param name="max_intron_length" value="500000"/> - <param name="quals_scale" value="default"/><param name="junction_filter" value="0.15"/><param name="max_multihits" value="40"/><param name="min_segment_intron" value="50" /> @@ -494,7 +493,6 @@ <param name="splice_mismatches" value="0"/><param name="min_intron_length" value="70"/><param name="max_intron_length" value="500000"/> - <param name="quals_scale" value="default"/><param name="junction_filter" value="0.15"/><param name="max_multihits" value="40"/><param name="min_segment_intron" value="50" /> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.