1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/a019781b2a3b/ changeset: a019781b2a3b user: dan date: 2011-10-24 23:54:48 summary: GATK updates. affected #: 3 files diff -r d0842bf94ff95b7b34cb46f5dbcc9a25167110c7 -r a019781b2a3b0a7e1f25e278f1c234ae1eab4897 tools/gatk/variant_apply_recalibration.xml --- a/tools/gatk/variant_apply_recalibration.xml +++ b/tools/gatk/variant_apply_recalibration.xml @@ -102,9 +102,9 @@ <param name="input_recal" type="data" format="gatk_recal" label="Variant Recalibration file" /><param name="input_tranches" type="data" format="gatk_tranche" label="Variant Tranches file" /><param name="ref_file" type="select" label="Using reference genome"> - <!-- <options from_data_table="picard_indexes"> - <filter type="data_meta" key="dbkey" ref="variants[0].input_variants" column="dbkey"/> - </options> --> + <options from_data_table="picard_indexes"> + <!-- <filter type="data_meta" key="dbkey" ref="variants[0].input_variants" column="dbkey"/> --> + </options></param></when><when value="history"><!-- FIX ME!!!! --> diff -r d0842bf94ff95b7b34cb46f5dbcc9a25167110c7 -r a019781b2a3b0a7e1f25e278f1c234ae1eab4897 tools/gatk/variant_eval.xml --- a/tools/gatk/variant_eval.xml +++ b/tools/gatk/variant_eval.xml @@ -159,9 +159,9 @@ <param name="input_variant" type="data" format="vcf" label="Input variant file" /></repeat><param name="ref_file" type="select" label="Using reference genome"> - <!--<options from_data_table="picard_indexes"> - <filter type="data_meta" key="dbkey" ref="input_variant" column="dbkey"/> - </options>--> + <options from_data_table="picard_indexes"> + <!-- <filter type="data_meta" key="dbkey" ref="input_variant" column="dbkey"/> --> + </options></param></when><when value="history"><!-- FIX ME!!!! --> diff -r d0842bf94ff95b7b34cb46f5dbcc9a25167110c7 -r a019781b2a3b0a7e1f25e278f1c234ae1eab4897 tools/gatk/variant_recalibrator.xml --- a/tools/gatk/variant_recalibrator.xml +++ b/tools/gatk/variant_recalibrator.xml @@ -152,9 +152,9 @@ <param name="input_variants" type="data" format="vcf" label="Variant file to recalibrate" /></repeat><param name="ref_file" type="select" label="Using reference genome"> - <!-- <options from_data_table="picard_indexes"> - <filter type="data_meta" key="dbkey" ref="variants[0].input_variants" column="dbkey"/> - </options> --> + <options from_data_table="picard_indexes"> + <!-- <filter type="data_meta" key="dbkey" ref="variants[0].input_variants" column="dbkey"/> --> + </options></param></when><when value="history"><!-- FIX ME!!!! --> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.