[galaxy-commits] commit/galaxy-central: guerler: ToolForm: Place requirements into pulldown menu, add toolshed link, remove spaces

10 Feb 2015

1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/commits/1bb9dcb87c49/
Changeset:   1bb9dcb87c49
User:        guerler
Date:        2015-02-11 03:13:42+00:00
Summary:     ToolForm: Place requirements into pulldown menu, add toolshed link, remove spaces
Affected #:  4 files

diff -r 0afbc9b476c5cd7ebf827b834628c877f75fe3e6 -r 1bb9dcb87c4994b81a7dcdd825dd3ed91c767219 client/galaxy/scripts/mvc/tools/tools-form-base.js

--- a/client/galaxy/scripts/mvc/tools/tools-form-base.js
+++ b/client/galaxy/scripts/mvc/tools/tools-form-base.js
@@ -22,13 +22,13 @@
                 // portlet style
                 cls_portlet     : 'ui-portlet-limited'
             };
-    
+
             // configure options
             this.options = Utils.merge(options, this.optionsDefault);
-    
+
             // log options
             console.debug(this.options);
-            
+
             // link galaxy modal or create one
             var galaxy = parent.Galaxy;
             if (galaxy && galaxy.modal) {
@@ -36,84 +36,84 @@
             } else {
                 this.modal = new Ui.Modal.View();
             }
-    
+
             // check if the user is an admin
             if (galaxy && galaxy.currUser) {
                 this.is_admin = galaxy.currUser.get('is_admin');
             } else {
                 this.is_admin = false;
             }
-            
+
             // link container
             this.container = this.options.container || 'body';
-            
+
             // create deferred processing queue handler
             // this handler reduces the number of requests to the api by filtering redundant requests
             this.deferred = new Deferred();
-            
+
             // set element
             this.setElement('<div/>');
-            
+
             // add to main element
             $(this.container).append(this.$el);
-            
+
             // build this form
             this.build(this.options);
         },
-        
+
         /** Main tool form build function. This function is called once a new model is available.
         */
         build: function(options) {
             // link this
             var self = this;
-            
+
             // reset events
             this.off('refresh');
             this.off('reset');
-            
+
             // reset field list, which contains the input field elements
             this.field_list = {};
-            
+
             // reset sequential input definition list, which contains the input definitions as provided from the api
             this.input_list = {};
-            
+
             // reset input element list, which contains the dom elements of each input element (includes also the input field)
             this.element_list = {};
-            
+
             // creates a tree/json data structure from the input form
             this.tree = new ToolTree(this);
-            
+
             // request history content and build form
             this.content = new ToolContent(this);
-            
+
             // update model data
             self.options.inputs = options && options.inputs;
-                    
+
             // create ui elements
             this._renderForm(options);
-            
+
             // rebuild the underlying data structure
             this.tree.finalize();
-            
+
             // show errors on startup
             if (options.initial_errors) {
                 this._errors(options);
             }
-            
+
             // add refresh listener
             this.on('refresh', function() {
                 // by using/resetting the deferred ajax queue the number of redundant calls is reduced
                 self.deferred.reset();
                 self.deferred.execute(function(){self._updateModel()});
             });
-            
+
             // add reset listener
             this.on('reset', function() {
                 for (var i in this.element_list) {
                     this.element_list[i].reset();
                 }
             });
-            
+
             // refresh
             this.trigger('refresh');
         },
@@ -124,7 +124,7 @@
             $(this.container).empty();
             $(this.container).append($el);
         },
-                
+
         /** Highlight and scroll to input element (currently only used for error notifications)
         */
         highlight: function (input_id, message, silent) {
@@ -144,7 +144,7 @@
                 }
             }
         },
-        
+
         /** Highlights errors
         */
         _errors: function(options) {
@@ -168,35 +168,10 @@
         _renderForm: function(options) {
             // link this
             var self = this;
-            
+
             // create message view
             this.message = new Ui.Message();
-            
-            // button for version selection
-            var requirements_button = new Ui.ButtonIcon({
-                icon    : 'fa-info-circle',
-                title   : (!options.narrow && 'Requirements') || null,
-                tooltip : 'Display tool requirements',
-                onclick : function() {
-                    if (!this.visible) {
-                        this.visible = true;
-                        self.message.update({
-                            persistent  : true,
-                            message     : ToolTemplate.requirements(options),
-                            status      : 'info'
-                        });
-                    } else {
-                        this.visible = false;
-                        self.message.update({
-                            message     : ''
-                        });
-                    }
-                }
-            });
-            if (!options.requirements || options.requirements.length == 0) {
-                requirements_button.$el.hide();
-            }
-            
+
             // button for version selection
             var versions_button = new Ui.ButtonMenu({
                 icon    : 'fa-cubes',
@@ -226,14 +201,14 @@
             } else {
                 versions_button.$el.hide();
             }
-            
+
             // button menu
             var menu_button = new Ui.ButtonMenu({
                 icon    : 'fa-caret-down',
                 title   : (!options.narrow && 'Options') || null,
                 tooltip : 'View available options'
             });
-            
+
             // configure button selection
             if(options.biostar_url) {
                 // add question option
@@ -256,7 +231,7 @@
                     }
                 });
             };
-            
+
             // create share button
             menu_button.addMenu({
                 icon    : 'fa-share',
@@ -266,7 +241,7 @@
                     prompt('Copy to clipboard: Ctrl+C, Enter', window.location.origin + galaxy_config.root + 'root?tool_id=' + options.id);
                 }
             });
-            
+
             // add admin operations
             if (this.is_admin) {
                 // create download button
@@ -279,47 +254,83 @@
                     }
                 });
             }
-            
+
+            // button for version selection
+            if (options.requirements && options.requirements.length > 0) {
+                menu_button.addMenu({
+                    icon    : 'fa-info-circle',
+                    title   : 'Requirements',
+                    tooltip : 'Display tool requirements',
+                    onclick : function() {
+                        if (!this.visible) {
+                            this.visible = true;
+                            self.message.update({
+                                persistent  : true,
+                                message     : ToolTemplate.requirements(options),
+                                status      : 'info'
+                            });
+                        } else {
+                            this.visible = false;
+                            self.message.update({
+                                message     : ''
+                            });
+                        }
+                    }
+                });
+            }
+
+
+            // add toolshed url
+            if (this.options.sharable_url) {
+                menu_button.addMenu({
+                    icon    : 'fa-external-link',
+                    title   : 'Open in Toolshed',
+                    tooltip : 'Access the repository',
+                    onclick : function() {
+                        window.open(self.options.sharable_url);
+                    }
+                });
+            }
+
             // create tool form section
             this.section = new ToolSection.View(self, {
                 inputs : options.inputs
             });
-            
+
             // switch to classic tool form mako if the form definition is incompatible
             if (this.incompatible) {
                 this.$el.hide();
                 $('#tool-form-classic').show();
                 return;
             }
-            
+
             // create portlet
             this.portlet = new Portlet.View({
                 icon    : 'fa-wrench',
                 title   : '<b>' + options.name + '</b> ' + options.description + ' (Galaxy Tool Version ' + options.version + ')',
                 cls     : this.options.cls_portlet,
                 operations: {
-                    requirements    : requirements_button,
-                    menu            : menu_button,
-                    versions        : versions_button
+                    menu        : menu_button,
+                    versions    : versions_button
                 },
                 buttons : this.buttons
             });
-            
+
             // append message
             this.portlet.append(this.message.$el.addClass('ui-margin-top'));
-            
+
             // append tool section
             this.portlet.append(this.section.$el);
-            
+
             // start form
             this.$el.empty();
             this.$el.append(this.portlet.$el);
-            
+
             // append help
             if (options.help != '') {
                 this.$el.append(ToolTemplate.help(options.help));
             }
-            
+
             // append citations
             if (options.citations) {
                 var $citations = $('<div/>');
@@ -330,7 +341,7 @@
                 citations.fetch();
                 this.$el.append($citations);
             }
-            
+
             // show message if available in model
             if (options.message) {
                 this.message.update({

diff -r 0afbc9b476c5cd7ebf827b834628c877f75fe3e6 -r 1bb9dcb87c4994b81a7dcdd825dd3ed91c767219 lib/galaxy/tools/__init__.py
--- a/lib/galaxy/tools/__init__.py
+++ b/lib/galaxy/tools/__init__.py
@@ -2520,7 +2520,7 @@
         for t in tools:
             tool_versions.append(t.version)
 
-        ## add information with underlying requirements and their versions
+        # add information with underlying requirements and their versions
         tool_requirements = []
         if self.requirements:
             for requirement in self.requirements:
@@ -2529,11 +2529,17 @@
                     'version'   : requirement.version
                 })
 
+        # add toolshed url
+        sharable_url = None
+        if self.tool_shed_repository:
+            sharable_url = self.tool_shed_repository.get_sharable_url( trans.app )
+
         # add additional properties
         tool_model.update({
             'help'          : tool_help,
             'citations'     : tool_citations,
             'biostar_url'   : trans.app.config.biostar_url,
+            'sharable_url'  : sharable_url,
             'message'       : tool_message,
             'versions'      : tool_versions,
             'requirements'  : tool_requirements,

diff -r 0afbc9b476c5cd7ebf827b834628c877f75fe3e6 -r 1bb9dcb87c4994b81a7dcdd825dd3ed91c767219 static/scripts/mvc/tools/tools-form-base.js
--- a/static/scripts/mvc/tools/tools-form-base.js
+++ b/static/scripts/mvc/tools/tools-form-base.js
@@ -22,13 +22,13 @@
                 // portlet style
                 cls_portlet     : 'ui-portlet-limited'
             };
-    
+
             // configure options
             this.options = Utils.merge(options, this.optionsDefault);
-    
+
             // log options
             console.debug(this.options);
-            
+
             // link galaxy modal or create one
             var galaxy = parent.Galaxy;
             if (galaxy && galaxy.modal) {
@@ -36,84 +36,84 @@
             } else {
                 this.modal = new Ui.Modal.View();
             }
-    
+
             // check if the user is an admin
             if (galaxy && galaxy.currUser) {
                 this.is_admin = galaxy.currUser.get('is_admin');
             } else {
                 this.is_admin = false;
             }
-            
+
             // link container
             this.container = this.options.container || 'body';
-            
+
             // create deferred processing queue handler
             // this handler reduces the number of requests to the api by filtering redundant requests
             this.deferred = new Deferred();
-            
+
             // set element
             this.setElement('<div/>');
-            
+
             // add to main element
             $(this.container).append(this.$el);
-            
+
             // build this form
             this.build(this.options);
         },
-        
+
         /** Main tool form build function. This function is called once a new model is available.
         */
         build: function(options) {
             // link this
             var self = this;
-            
+
             // reset events
             this.off('refresh');
             this.off('reset');
-            
+
             // reset field list, which contains the input field elements
             this.field_list = {};
-            
+
             // reset sequential input definition list, which contains the input definitions as provided from the api
             this.input_list = {};
-            
+
             // reset input element list, which contains the dom elements of each input element (includes also the input field)
             this.element_list = {};
-            
+
             // creates a tree/json data structure from the input form
             this.tree = new ToolTree(this);
-            
+
             // request history content and build form
             this.content = new ToolContent(this);
-            
+
             // update model data
             self.options.inputs = options && options.inputs;
-                    
+
             // create ui elements
             this._renderForm(options);
-            
+
             // rebuild the underlying data structure
             this.tree.finalize();
-            
+
             // show errors on startup
             if (options.initial_errors) {
                 this._errors(options);
             }
-            
+
             // add refresh listener
             this.on('refresh', function() {
                 // by using/resetting the deferred ajax queue the number of redundant calls is reduced
                 self.deferred.reset();
                 self.deferred.execute(function(){self._updateModel()});
             });
-            
+
             // add reset listener
             this.on('reset', function() {
                 for (var i in this.element_list) {
                     this.element_list[i].reset();
                 }
             });
-            
+
             // refresh
             this.trigger('refresh');
         },
@@ -124,7 +124,7 @@
             $(this.container).empty();
             $(this.container).append($el);
         },
-                
+
         /** Highlight and scroll to input element (currently only used for error notifications)
         */
         highlight: function (input_id, message, silent) {
@@ -144,7 +144,7 @@
                 }
             }
         },
-        
+
         /** Highlights errors
         */
         _errors: function(options) {
@@ -168,35 +168,10 @@
         _renderForm: function(options) {
             // link this
             var self = this;
-            
+
             // create message view
             this.message = new Ui.Message();
-            
-            // button for version selection
-            var requirements_button = new Ui.ButtonIcon({
-                icon    : 'fa-info-circle',
-                title   : (!options.narrow && 'Requirements') || null,
-                tooltip : 'Display tool requirements',
-                onclick : function() {
-                    if (!this.visible) {
-                        this.visible = true;
-                        self.message.update({
-                            persistent  : true,
-                            message     : ToolTemplate.requirements(options),
-                            status      : 'info'
-                        });
-                    } else {
-                        this.visible = false;
-                        self.message.update({
-                            message     : ''
-                        });
-                    }
-                }
-            });
-            if (!options.requirements || options.requirements.length == 0) {
-                requirements_button.$el.hide();
-            }
-            
+
             // button for version selection
             var versions_button = new Ui.ButtonMenu({
                 icon    : 'fa-cubes',
@@ -226,14 +201,14 @@
             } else {
                 versions_button.$el.hide();
             }
-            
+
             // button menu
             var menu_button = new Ui.ButtonMenu({
                 icon    : 'fa-caret-down',
                 title   : (!options.narrow && 'Options') || null,
                 tooltip : 'View available options'
             });
-            
+
             // configure button selection
             if(options.biostar_url) {
                 // add question option
@@ -256,7 +231,7 @@
                     }
                 });
             };
-            
+
             // create share button
             menu_button.addMenu({
                 icon    : 'fa-share',
@@ -266,7 +241,7 @@
                     prompt('Copy to clipboard: Ctrl+C, Enter', window.location.origin + galaxy_config.root + 'root?tool_id=' + options.id);
                 }
             });
-            
+
             // add admin operations
             if (this.is_admin) {
                 // create download button
@@ -279,47 +254,83 @@
                     }
                 });
             }
-            
+
+            // button for version selection
+            if (options.requirements && options.requirements.length > 0) {
+                menu_button.addMenu({
+                    icon    : 'fa-info-circle',
+                    title   : 'Requirements',
+                    tooltip : 'Display tool requirements',
+                    onclick : function() {
+                        if (!this.visible) {
+                            this.visible = true;
+                            self.message.update({
+                                persistent  : true,
+                                message     : ToolTemplate.requirements(options),
+                                status      : 'info'
+                            });
+                        } else {
+                            this.visible = false;
+                            self.message.update({
+                                message     : ''
+                            });
+                        }
+                    }
+                });
+            }
+
+
+            // add toolshed url
+            if (this.options.sharable_url) {
+                menu_button.addMenu({
+                    icon    : 'fa-external-link',
+                    title   : 'Open in Toolshed',
+                    tooltip : 'Access the repository',
+                    onclick : function() {
+                        window.open(self.options.sharable_url);
+                    }
+                });
+            }
+
             // create tool form section
             this.section = new ToolSection.View(self, {
                 inputs : options.inputs
             });
-            
+
             // switch to classic tool form mako if the form definition is incompatible
             if (this.incompatible) {
                 this.$el.hide();
                 $('#tool-form-classic').show();
                 return;
             }
-            
+
             // create portlet
             this.portlet = new Portlet.View({
                 icon    : 'fa-wrench',
                 title   : '<b>' + options.name + '</b> ' + options.description + ' (Galaxy Tool Version ' + options.version + ')',
                 cls     : this.options.cls_portlet,
                 operations: {
-                    requirements    : requirements_button,
-                    menu            : menu_button,
-                    versions        : versions_button
+                    menu        : menu_button,
+                    versions    : versions_button
                 },
                 buttons : this.buttons
             });
-            
+
             // append message
             this.portlet.append(this.message.$el.addClass('ui-margin-top'));
-            
+
             // append tool section
             this.portlet.append(this.section.$el);
-            
+
             // start form
             this.$el.empty();
             this.$el.append(this.portlet.$el);
-            
+
             // append help
             if (options.help != '') {
                 this.$el.append(ToolTemplate.help(options.help));
             }
-            
+
             // append citations
             if (options.citations) {
                 var $citations = $('<div/>');
@@ -330,7 +341,7 @@
                 citations.fetch();
                 this.$el.append($citations);
             }
-            
+
             // show message if available in model
             if (options.message) {
                 this.message.update({

diff -r 0afbc9b476c5cd7ebf827b834628c877f75fe3e6 -r 1bb9dcb87c4994b81a7dcdd825dd3ed91c767219 static/scripts/packed/mvc/tools/tools-form-base.js
--- a/static/scripts/packed/mvc/tools/tools-form-base.js
+++ b/static/scripts/packed/mvc/tools/tools-form-base.js
@@ -1,1 +1,1 @@
-define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree"],function(g,h,f,k,i,a,d,c,e,j,b){return Backbone.View.extend({initialize:function(l){this.optionsDefault={is_dynamic:true,narrow:false,initial_errors:false,cls_portlet:"ui-portlet-limited"};this.options=g.merge(l,this.optionsDefault);console.debug(this.options);var m=parent.Galaxy;if(m&&m.modal){this.modal=m.modal}else{this.modal=new k.Modal.View()}if(m&&m.currUser){this.is_admin=m.currUser.get("is_admin")}else{this.is_admin=false}this.container=this.options.container||"body";this.deferred=new h();this.setElement("<div/>");$(this.container).append(this.$el);this.build(this.options)},build:function(m){var l=this;this.off("refresh");this.off("reset");this.field_list={};this.input_list={};this.element_list={};this.tree=new b(this);this.content=new e(this);l.options.inputs=m&&m.inputs;this._renderForm(m);this.tree.finalize();if(m.initial_errors){this._errors(m)}this.on("refresh",function(){l.deferred.reset();l.deferred.execute(function(){l._updateModel()})});this.on("reset",function(){for(var n in this.element_list){this.element_list[n].reset()}});this.trigger("refresh")},reciept:function(l){$(this.container).empty();$(this.container).append(l)},highlight:function(m,n,l){var o=this.element_list[m];if(o){o.error(n||"Please verify this parameter.");if(!l){$(this.container).animate({scrollTop:o.$el.offset().top-20},500)}}},_errors:function(n){this.trigger("reset");if(n&&n.errors){var o=this.tree.matchResponse(n.errors);for(var m in this.element_list){var l=this.element_list[m];if(o[m]){this.highlight(m,o[m],true)}}}},_renderForm:function(u){var t=this;this.message=new k.Message();var q=new k.ButtonIcon({icon:"fa-info-circle",title:(!u.narrow&&"Requirements")||null,tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;t.message.update({persistent:true,message:c.requirements(u),status:"info"})}else{this.visible=false;t.message.update({message:""})}}});if(!u.requirements||u.requirements.length==0){q.$el.hide()}var m=new k.ButtonMenu({icon:"fa-cubes",title:(!u.narrow&&"Versions")||null,tooltip:"Select another tool version"});if(u.versions&&u.versions.length>1){for(var o in u.versions){var r=u.versions[o];if(r!=u.version){m.addMenu({title:"Switch to "+r,version:r,icon:"fa-cube",onclick:function(){t.options.id=t.options.id.replace(t.options.version,this.version);t.options.version=this.version;t.deferred.reset();t.deferred.execute(function(){t._buildModel()})}})}}}else{m.$el.hide()}var p=new k.ButtonMenu({icon:"fa-caret-down",title:(!u.narrow&&"Options")||null,tooltip:"View available options"});if(u.biostar_url){p.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(u.biostar_url+"/p/new/post/")}});p.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(u.biostar_url+"/t/"+u.id+"/")}})}p.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+u.id)}});if(this.is_admin){p.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+u.id+"/download"}})}this.section=new j.View(t,{inputs:u.inputs});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new f.View({icon:"fa-wrench",title:"<b>"+u.name+"</b> "+u.description+" (Galaxy Tool Version "+u.version+")",cls:this.options.cls_portlet,operations:{requirements:q,menu:p,versions:m},buttons:this.buttons});this.portlet.append(this.message.$el.addClass("ui-margin-top"));this.portlet.append(this.section.$el);this.$el.empty();this.$el.append(this.portlet.$el);if(u.help!=""){this.$el.append(c.help(u.help))}if(u.citations){var s=$("<div/>");var l=new i.ToolCitationCollection();l.tool_id=u.id;var n=new a.CitationListView({el:s,collection:l});n.render();l.fetch();this.$el.append(s)}if(u.message){this.message.update({persistent:true,status:"warning",message:u.message})}}})});
\ No newline at end of file
+define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree"],function(g,h,f,k,i,a,d,c,e,j,b){return Backbone.View.extend({initialize:function(l){this.optionsDefault={is_dynamic:true,narrow:false,initial_errors:false,cls_portlet:"ui-portlet-limited"};this.options=g.merge(l,this.optionsDefault);console.debug(this.options);var m=parent.Galaxy;if(m&&m.modal){this.modal=m.modal}else{this.modal=new k.Modal.View()}if(m&&m.currUser){this.is_admin=m.currUser.get("is_admin")}else{this.is_admin=false}this.container=this.options.container||"body";this.deferred=new h();this.setElement("<div/>");$(this.container).append(this.$el);this.build(this.options)},build:function(m){var l=this;this.off("refresh");this.off("reset");this.field_list={};this.input_list={};this.element_list={};this.tree=new b(this);this.content=new e(this);l.options.inputs=m&&m.inputs;this._renderForm(m);this.tree.finalize();if(m.initial_errors){this._errors(m)}this.on("refresh",function(){l.deferred.reset();l.deferred.execute(function(){l._updateModel()})});this.on("reset",function(){for(var n in this.element_list){this.element_list[n].reset()}});this.trigger("refresh")},reciept:function(l){$(this.container).empty();$(this.container).append(l)},highlight:function(m,n,l){var o=this.element_list[m];if(o){o.error(n||"Please verify this parameter.");if(!l){$(this.container).animate({scrollTop:o.$el.offset().top-20},500)}}},_errors:function(n){this.trigger("reset");if(n&&n.errors){var o=this.tree.matchResponse(n.errors);for(var m in this.element_list){var l=this.element_list[m];if(o[m]){this.highlight(m,o[m],true)}}}},_renderForm:function(t){var s=this;this.message=new k.Message();var m=new k.ButtonMenu({icon:"fa-cubes",title:(!t.narrow&&"Versions")||null,tooltip:"Select another tool version"});if(t.versions&&t.versions.length>1){for(var o in t.versions){var q=t.versions[o];if(q!=t.version){m.addMenu({title:"Switch to "+q,version:q,icon:"fa-cube",onclick:function(){s.options.id=s.options.id.replace(s.options.version,this.version);s.options.version=this.version;s.deferred.reset();s.deferred.execute(function(){s._buildModel()})}})}}}else{m.$el.hide()}var p=new k.ButtonMenu({icon:"fa-caret-down",title:(!t.narrow&&"Options")||null,tooltip:"View available options"});if(t.biostar_url){p.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(t.biostar_url+"/p/new/post/")}});p.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(t.biostar_url+"/t/"+t.id+"/")}})}p.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+t.id)}});if(this.is_admin){p.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+t.id+"/download"}})}if(t.requirements&&t.requirements.length>0){p.addMenu({icon:"fa-info-circle",title:"Requirements",tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;s.message.update({persistent:true,message:c.requirements(t),status:"info"})}else{this.visible=false;s.message.update({message:""})}}})}if(this.options.sharable_url){p.addMenu({icon:"fa-external-link",title:"Open in Toolshed",tooltip:"Access the repository",onclick:function(){window.open(s.options.sharable_url)}})}this.section=new j.View(s,{inputs:t.inputs});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new f.View({icon:"fa-wrench",title:"<b>"+t.name+"</b> "+t.description+" (Galaxy Tool Version "+t.version+")",cls:this.options.cls_portlet,operations:{menu:p,versions:m},buttons:this.buttons});this.portlet.append(this.message.$el.addClass("ui-margin-top"));this.portlet.append(this.section.$el);this.$el.empty();this.$el.append(this.portlet.$el);if(t.help!=""){this.$el.append(c.help(t.help))}if(t.citations){var r=$("<div/>");var l=new i.ToolCitationCollection();l.tool_id=t.id;var n=new a.CitationListView({el:r,collection:l});n.render();l.fetch();this.$el.append(r)}if(t.message){this.message.update({persistent:true,status:"warning",message:t.message})}}})});
\ No newline at end of file

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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[galaxy-commits] commit/galaxy-central: guerler: ToolForm: Place requirements into pulldown menu, add toolshed link, remove spaces

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