details: http://www.bx.psu.edu/hg/galaxy/rev/20ba52b9d504 changeset: 3720:20ba52b9d504 user: jeremy goecks <jeremy.goecks@emory.edu> date: Fri Apr 30 13:08:33 2010 -0400 description: Remove headers from SAM file so that output matches new Tophat wrapper. diffstat: test-data/tophat_out1.sam | 2 -- 1 files changed, 0 insertions(+), 2 deletions(-) diffs (9 lines): diff -r 436c9d1c5e64 -r 20ba52b9d504 test-data/tophat_out1.sam --- a/test-data/tophat_out1.sam Wed Apr 28 17:35:02 2010 -0400 +++ b/test-data/tophat_out1.sam Fri Apr 30 13:08:33 2010 -0400 @@ -1,5 +1,3 @@ -@HD VN:1.0 SO:sorted -@PG TopHat VN:1.0.13 CL:/Users/jeremy/projects/bx_tools/tophat-1.0.13/bin/tophat -r 20 test_ref reads_1.fq reads_2.fq test_mRNA_3_187_51 99 test_chromosome 53 255 75M = 163 0 TACTATTTGACTAGACTGGAGGCGCTTGCGACTGAGCTAGGACGTGCCACTACGGGGATGACGACTCGGACTACG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII NM:i:2 test_mRNA_4_191_5d 163 test_chromosome 54 255 75M = 167 0 ACTATCTGACGAGACTGGAGGCGCTTGCGACTGAGCTAGGACGTACCATTACGCGGATGACGACTAGGACTACGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII NM:i:4 test_mRNA_5_197_46 97 test_chromosome 55 255 75M = 173 0 CTATCTGACTAGACTCGAGGCGCTTGCGTCTGAGCTAGGACGTGCCACTACGGGGATGACGACTAGGACTACGGA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII NM:i:2