1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/d1f6d05706d0/ Changeset: d1f6d05706d0 User: natefoo Date: 2014-09-10 20:37:33 Summary: Fix references to config.ucsc_display_sites that I missed. Affected #: 6 files diff -r f68f8c8f147b863ec968475216cc9a72044a722b -r d1f6d05706d0f03c7a31cd5f8b3890c55e565af0 display_applications/ucsc/bam.xml --- a/display_applications/ucsc/bam.xml +++ b/display_applications/ucsc/bam.xml @@ -6,7 +6,7 @@ <dynamic_param name="ucsc_link" value="1"/><dynamic_param name="builds" value="2" split="True" separator="," /><!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey --> - <filter>${site_id in $APP.config.ucsc_display_sites}</filter> + <filter>${site_id in $APP.datatypes_registry.get_display_sites('ucsc')}</filter><filter>${dataset.dbkey in $builds}</filter><!-- We define url and params as normal, but values defined in dynamic_param are available by specified name --><url>${ucsc_link}db=${qp($bam_file.dbkey)}&hgt.customText=${qp($track.url)}</url> diff -r f68f8c8f147b863ec968475216cc9a72044a722b -r d1f6d05706d0f03c7a31cd5f8b3890c55e565af0 display_applications/ucsc/bigbed.xml --- a/display_applications/ucsc/bigbed.xml +++ b/display_applications/ucsc/bigbed.xml @@ -6,7 +6,7 @@ <dynamic_param name="ucsc_link" value="1"/><dynamic_param name="builds" value="2" split="True" separator="," /><!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey --> - <filter>${site_id in $APP.config.ucsc_display_sites}</filter> + <filter>${site_id in $APP.datatypes_registry.get_display_sites('ucsc')}</filter><filter>${dataset.dbkey in $builds}</filter><!-- We define url and params as normal, but values defined in dynamic_param are available by specified name --><url>${ucsc_link}db=${qp($bigbed_file.dbkey)}&hgt.customText=${qp($track.url)}</url> diff -r f68f8c8f147b863ec968475216cc9a72044a722b -r d1f6d05706d0f03c7a31cd5f8b3890c55e565af0 display_applications/ucsc/bigwig.xml --- a/display_applications/ucsc/bigwig.xml +++ b/display_applications/ucsc/bigwig.xml @@ -6,7 +6,7 @@ <dynamic_param name="ucsc_link" value="1"/><dynamic_param name="builds" value="2" split="True" separator="," /><!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey --> - <filter>${site_id in $APP.config.ucsc_display_sites}</filter> + <filter>${site_id in $APP.datatypes_registry.get_display_sites('ucsc')}</filter><filter>${dataset.dbkey in $builds}</filter><!-- We define url and params as normal, but values defined in dynamic_param are available by specified name --><url>${ucsc_link}db=${qp($bigwig_file.dbkey)}&hgt.customText=${qp($track.url)}</url> diff -r f68f8c8f147b863ec968475216cc9a72044a722b -r d1f6d05706d0f03c7a31cd5f8b3890c55e565af0 display_applications/ucsc/interval_as_bed.xml --- a/display_applications/ucsc/interval_as_bed.xml +++ b/display_applications/ucsc/interval_as_bed.xml @@ -6,7 +6,7 @@ <dynamic_param name="ucsc_link" value="1"/><dynamic_param name="builds" value="2" split="True" separator="," /><!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey --> - <filter>${site_id in $APP.config.ucsc_display_sites}</filter> + <filter>${site_id in $APP.datatypes_registry.get_display_sites('ucsc')}</filter><filter>${dataset.dbkey in $builds}</filter><!-- We define url and params as normal, but values defined in dynamic_param are available by specified name --><url>${ucsc_link}db=${qp($bed_file.dbkey)}&position=${position.qp}&hgt.customText=${bed_file.qp}</url> diff -r f68f8c8f147b863ec968475216cc9a72044a722b -r d1f6d05706d0f03c7a31cd5f8b3890c55e565af0 display_applications/ucsc/maf_customtrack.xml --- a/display_applications/ucsc/maf_customtrack.xml +++ b/display_applications/ucsc/maf_customtrack.xml @@ -6,7 +6,7 @@ <dynamic_param name="ucsc_link" value="1"/><dynamic_param name="builds" value="2" split="True" separator="," /><!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey --> - <filter>${site_id in $APP.config.ucsc_display_sites}</filter> + <filter>${site_id in $APP.datatypes_registry.get_display_sites('ucsc')}</filter><filter>${dataset.dbkey in $builds}</filter><!-- We define url and params as normal, but values defined in dynamic_param are available by specified name --><url>${ucsc_link}db=${qp($maf_customtrack_file.dbkey)}&position=${maf_customtrack_file.metadata.vp_chromosome}:${maf_customtrack_file.metadata.vp_start}-${maf_customtrack_file.metadata.vp_end}&hgt.customText=${maf_customtrack_file.qp}</url> diff -r f68f8c8f147b863ec968475216cc9a72044a722b -r d1f6d05706d0f03c7a31cd5f8b3890c55e565af0 display_applications/ucsc/vcf.xml --- a/display_applications/ucsc/vcf.xml +++ b/display_applications/ucsc/vcf.xml @@ -6,7 +6,7 @@ <dynamic_param name="ucsc_link" value="1"/><dynamic_param name="builds" value="2" split="True" separator="," /><!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey --> - <filter>${site_id in $APP.config.ucsc_display_sites}</filter> + <filter>${site_id in $APP.datatypes_registry.get_display_sites('ucsc')}</filter><filter>${dataset.dbkey in $builds}</filter><!-- We define url and params as normal, but values defined in dynamic_param are available by specified name --><url>${ucsc_link}db=${qp($bgzip_file.dbkey)}&hgt.customText=${qp($track.url)}</url> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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