2 new changesets in galaxy-central: http://bitbucket.org/galaxy/galaxy-central/changeset/71dd469f2b9e/ changeset: 71dd469f2b9e user: dan date: 2011-09-07 19:55:08 summary: Update GATK Unified Genotyper with num_threads of 4. affected #: 1 file (42 bytes) --- a/tools/gatk/unified_genotyper.xml Wed Sep 07 12:28:18 2011 -0400 +++ b/tools/gatk/unified_genotyper.xml Wed Sep 07 13:55:08 2011 -0400 @@ -10,6 +10,7 @@ -p 'java -jar "${GALAXY_DATA_INDEX_DIR}/shared/jars/gatk/GenomeAnalysisTK.jar" -T "UnifiedGenotyper" + --num_threads 4 ##hard coded, for now -o "${output_vcf}" -et "NO_ET" ##ET no phone home ##-log "${output_log}" ##don't use this to log to file, instead directly capture stdout http://bitbucket.org/galaxy/galaxy-central/changeset/a7c95bedc201/ changeset: a7c95bedc201 user: dan date: 2011-09-07 21:50:03 summary: merge affected #: 1 file (42 bytes) --- a/tools/gatk/unified_genotyper.xml Wed Sep 07 15:07:05 2011 -0400 +++ b/tools/gatk/unified_genotyper.xml Wed Sep 07 15:50:03 2011 -0400 @@ -10,6 +10,7 @@ -p 'java -jar "${GALAXY_DATA_INDEX_DIR}/shared/jars/gatk/GenomeAnalysisTK.jar" -T "UnifiedGenotyper" + --num_threads 4 ##hard coded, for now -o "${output_vcf}" -et "NO_ET" ##ET no phone home ##-log "${output_log}" ##don't use this to log to file, instead directly capture stdout Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.