Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 62fdbd526ae34357d3fbb44cedc46635c4df7cbb https://github.com/galaxyproject/galaxy/commit/62fdbd526ae34357d3fbb44cedc46... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-07-29 (Fri, 29 Jul 2016) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Fix the sanitization of None values in utils. This had previously not happened because Params had only been sanitizing strings coming in as part of the request, but if you're passing off (potentially manipulated, as in adding None default params) to a secondary request for a response, this can happen. Commit: ed7c357668df5bbb3381fae94353465594c7e184 https://github.com/galaxyproject/galaxy/commit/ed7c357668df5bbb3381fae943534... Author: John Chilton <jmchilton@gmail.com> Date: 2016-07-29 (Fri, 29 Jul 2016) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Merge pull request #2693 from dannon/utils_fix_sanitization_of_none [16.07] Fix the sanitization of None values in utils. This had previously no… Commit: 7bf0cc72418308e54b6ec180a8913623004c8288 https://github.com/galaxyproject/galaxy/commit/7bf0cc72418308e54b6ec180a8913... Author: Remi Marenco <remi.marenco@gmail.com> Date: 2016-08-02 (Tue, 02 Aug 2016) Changed paths: M lib/galaxy/datatypes/tracks.py Log Message: ----------- Remove the old HubAssembly class Commit: 3206199652330659aa9f1cebe75c6940787f85d4 https://github.com/galaxyproject/galaxy/commit/3206199652330659aa9f1cebe75c6... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/datatypes/tracks.py Log Message: ----------- Merge pull request #2701 from remimarenco/release_16.07 [16.07] Fix: Remove the old HubAssembly class Commit: 48849b814aac6bb70a1651f063f0789da4022ce7 https://github.com/galaxyproject/galaxy/commit/48849b814aac6bb70a1651f063f07... Author: John Chilton <jmchilton@gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Fixup metadata collection on workdir outputs for Pulsar. https://github.com/galaxyproject/galaxy/pull/1688/commits/a2e31403753c407e7f... which gave tool's clean working directories made the function get_workdir_outputs a big sloppy. Pulsar would send it the actual remote working directory for jobs and Galaxy would send it the job directory (expecting it to append 'working'). Commit: 82430c024378e15729e5d2b52e50ad49930e5dd2 https://github.com/galaxyproject/galaxy/commit/82430c024378e15729e5d2b52e50a... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Merge pull request #2721 from jmchilton/working_pulsar_metadata [16.07] Fix metadata collection on workdir outputs for Pulsar. Commit: 2affd08647c723014182552b09bcb4402d30d9b3 https://github.com/galaxyproject/galaxy/commit/2affd08647c723014182552b09bcb... Author: Greg Von Kuster <ghv2@psu.edu> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/dataset_collections/subcollections.py Log Message: ----------- Fix for splitting dataset collections Commit: 8b0d88b30e62997ec9b33fec402379b8e2033e5c https://github.com/galaxyproject/galaxy/commit/8b0d88b30e62997ec9b33fec40237... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/dataset_collections/subcollections.py Log Message: ----------- Merge pull request #2723 from jmchilton/backport_2708 [16.07] Backport #2708 Commit: 3206a54055620cb524fb5265ab91c979d3a520b2 https://github.com/galaxyproject/galaxy/commit/3206a54055620cb524fb5265ab91c... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: M lib/galaxy/datatypes/tracks.py M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/util/__init__.py Log Message: ----------- Merge branch 'release_16.07' into dev Compare: https://github.com/galaxyproject/galaxy/compare/7efa1e0e4dd0...3206a5405562