# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Nate Coraor <nate@bx.psu.edu> # Date 1286484637 14400 # Node ID 5038f0863ab9a8286fd97c718c63945bfd442dd0 # Parent b9f3c613c0266e9285679b06e39802a452f4b151 Actually change the invocation of sputnik from bx-sputnik as mentioned in my last commit. Thanks Kanwei. --- a/tools/regVariation/microsats_alignment_level.py +++ b/tools/regVariation/microsats_alignment_level.py @@ -34,7 +34,7 @@ def main(): fout = open(outfile, "w") print >>fout, "#Block\tSeq1_Name\tSeq1_Start\tSeq1_End\tSeq1_Type\tSeq1_Length\tSeq1_RepeatNumber\tSeq1_Unit\tSeq2_Name\tSeq2_Start\tSeq2_End\tSeq2_Type\tSeq2_Length\tSeq2_RepeatNumber\tSeq2_Unit" #sputnik_cmd = os.path.join(os.path.split(sys.argv[0])[0], "sputnik") - sputnik_cmd = "bx-sputnik" + sputnik_cmd = "sputnik" input = infile.read() skipped = 0 block_num = 0