Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6c2f1957a9c49943182b8b971097f9a8ef511bab https://github.com/galaxyproject/galaxy/commit/6c2f1957a9c49943182b8b971097f... Author: John Chilton <jmchilton@gmail.com> Date: 2018-05-04 (Fri, 04 May 2018) Changed paths: M lib/galaxy/util/rules_dsl.py M test/base/data/rules_dsl_spec.yml Log Message: ----------- Rules - test case and bug fixes for adding cols for regex groups. Commit: 898e73eca1eccfb9fb707cdb5af75ee72c3d7565 https://github.com/galaxyproject/galaxy/commit/898e73eca1eccfb9fb707cdb5af75... Author: John Chilton <jmchilton@gmail.com> Date: 2018-05-04 (Fri, 04 May 2018) Changed paths: M lib/galaxy/managers/collections.py Log Message: ----------- Rules - bug fix for apply_rules tool on nested collections. Commit: ec723829bf788b3100bfb56f72c22dd4981e3fdf https://github.com/galaxyproject/galaxy/commit/ec723829bf788b3100bfb56f72c22... Author: John Chilton <jmchilton@gmail.com> Date: 2018-05-04 (Fri, 04 May 2018) Changed paths: M lib/galaxy/tools/apply_rules.xml Log Message: ----------- Rules - fix poor name for Apply Rules output collection. Commit: 050c9e99c6c981518f160d99aeaa2f395a84e4b5 https://github.com/galaxyproject/galaxy/commit/050c9e99c6c981518f160d99aeaa2... Author: John Chilton <jmchilton@gmail.com> Date: 2018-05-05 (Sat, 05 May 2018) Changed paths: A test-data/rules/treated1fb.txt A test-data/rules/treated2fb.txt A test-data/rules/treated3fb.txt A test-data/rules/untreated1fb.txt A test-data/rules/untreated2fb.txt A test-data/rules/untreated3fb.txt A test-data/rules/untreated4fb.txt M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_tool_form.py Log Message: ----------- Rules - test case for apply rules tutorial. Demonstrates using the Apply Rules collection operation tool against existing collections to: - Use grouping to build nested lists from flat ones. - Invert nested collections. - Filter collections. - Filter while also grouping to build nested collections. Based on count data used in the DESeq2 tutorial (http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2...), originally from the Bioconductor Pasilla package (http://bioconductor.org/packages/release/data/experiment/html/pasilla.html). Citation: Huber W, Reyes A (2018). pasilla: Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.. R package version 1.8.0. Commit: 1b50504678dc5c84fa292236ac58697591611aa4 https://github.com/galaxyproject/galaxy/commit/1b50504678dc5c84fa292236ac586... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2018-06-12 (Tue, 12 Jun 2018) Changed paths: M lib/galaxy/tools/apply_rules.xml A test-data/rules/treated1fb.txt A test-data/rules/treated2fb.txt A test-data/rules/treated3fb.txt A test-data/rules/untreated1fb.txt A test-data/rules/untreated2fb.txt A test-data/rules/untreated3fb.txt A test-data/rules/untreated4fb.txt M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_tool_form.py Log Message: ----------- Merge pull request #6066 from jmchilton/apply_rules_tutorials Rules - test case for apply rules tutorial. Compare: https://github.com/galaxyproject/galaxy/compare/178486b840b6...1b50504678dc **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.