Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f7fa5a94ba945d56e916deba84353bcf5b44c746 https://github.com/galaxyproject/galaxy/commit/f7fa5a94ba945d56e916deba84353... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-10-25 (Thu, 25 Oct 2018) Changed paths: M lib/galaxy/jobs/handler.py Log Message: ----------- Don't mask exceptions during job runner work thread shutdown Commit: 93b93a789ae51a5478553f062a50d74050c49ef5 https://github.com/galaxyproject/galaxy/commit/93b93a789ae51a5478553f062a50d... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-10-25 (Thu, 25 Oct 2018) Changed paths: M lib/galaxy/jobs/runners/__init__.py Log Message: ----------- Modify job runner work thread shutdown behavior from "wait at least this long per thread" to "wait at least (but pretty close to) this long for all threads" Commit: 33c3b74bf56f9c197e4d15cc4cd6f94882fc1240 https://github.com/galaxyproject/galaxy/commit/33c3b74bf56f9c197e4d15cc4cd6f... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-10-25 (Thu, 25 Oct 2018) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M doc/source/admin/scaling.md M lib/galaxy/config.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Increase the value of monitor_thread_join_timeout to 30 now that it is the total wait time. Add more documentation about it and the uWSGI and supervisord options that changing it will have an effect upon. Commit: e7156bdd23a0621b3a98d50687041af2403241f3 https://github.com/galaxyproject/galaxy/commit/e7156bdd23a0621b3a98d50687041... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-10-25 (Thu, 25 Oct 2018) Changed paths: M test/base/driver_util.py Log Message: ----------- Restore monitor_thread_join_timeout to 5 for tests Commit: 7c6b184557dcfd052abf1424fc024f77838c4a70 https://github.com/galaxyproject/galaxy/commit/7c6b184557dcfd052abf1424fc024... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-10-25 (Thu, 25 Oct 2018) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M doc/source/admin/scaling.md M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Clarify that maximum job runner worker shutdown time is a multiple of `monitor_thread_join_timeout` based on the configured number of runner plugins. Commit: ae12cc92eb12cada527cb44dc5c66ae7b355545e https://github.com/galaxyproject/galaxy/commit/ae12cc92eb12cada527cb44dc5c66... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-10-25 (Thu, 25 Oct 2018) Changed paths: M lib/galaxy/jobs/handler.py Log Message: ----------- Catch all exceptions around runner shutdown so it doesn't prevent other runners from attempting shutdown. Commit: a6215ea68e4b8accfef5a5cec2133f440fec9fe0 https://github.com/galaxyproject/galaxy/commit/a6215ea68e4b8accfef5a5cec2133... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-10-25 (Thu, 25 Oct 2018) Changed paths: M lib/galaxy/jobs/handler.py Log Message: ----------- In fixing the incorrect behavior of what was previously in the handler shutdown method, I made the same mistake in a slightly different way. Commit: 4919805f815ef0e7f780b094ffd6c91f6d54c4b4 https://github.com/galaxyproject/galaxy/commit/4919805f815ef0e7f780b094ffd6c... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-26 (Fri, 26 Oct 2018) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M doc/source/admin/scaling.md M lib/galaxy/config.py M lib/galaxy/jobs/handler.py M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/webapps/galaxy/config_schema.yml M test/base/driver_util.py Log Message: ----------- Merge pull request #6924 from natefoo/quiesce-handler Be more precise with the job runner worker thread join timeout and improve documentation Compare: https://github.com/galaxyproject/galaxy/compare/dda297c4089f...4919805f815e **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.