1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/55e7d7008efe/ changeset: 55e7d7008efe user: afgane date: 2012-10-02 03:03:00 summary: Fix workflow API imports affected #: 1 file diff -r 3164ba737fd44f0ec842d6f2d743563d18d1dd74 -r 55e7d7008efee2c5622f2505612265a9593ae992 lib/galaxy/webapps/galaxy/api/workflows.py --- a/lib/galaxy/webapps/galaxy/api/workflows.py +++ b/lib/galaxy/webapps/galaxy/api/workflows.py @@ -8,9 +8,10 @@ from sqlalchemy import desc from galaxy import util from galaxy import web -from galaxy.tools.parameters import visit_input_values, DataToolParameter +from galaxy import model +from galaxy.tools.parameters import visit_input_values, DataToolParameter, RuntimeValue from galaxy.web.base.controller import BaseAPIController, url_for -from galaxy.workflow.modules import module_factory +from galaxy.workflow.modules import module_factory, ToolModule from galaxy.jobs.actions.post import ActionBox from galaxy.model.item_attrs import UsesAnnotations @@ -344,7 +345,7 @@ def _workflow_from_dict( self, trans, data, source=None ): """ - RPARK: copied from galaxy.web.controllers.workflows.py + RPARK: copied from galaxy.webapps.galaxy.controllers.workflows.py Creates a workflow from a dict. Created workflow is stored in the database and returned. """ # Put parameters in workflow mode @@ -388,7 +389,7 @@ # Stick this in the step temporarily step.temp_input_connections = step_dict['input_connections'] # Save step annotation. - annotation = step_dict[ 'annotation' ] + #annotation = step_dict[ 'annotation' ] #if annotation: #annotation = sanitize_html( annotation, 'utf-8', 'text/html' ) # ------------------------------------------ # @@ -398,7 +399,7 @@ # Unpack and add post-job actions. post_job_actions = step_dict.get( 'post_job_actions', {} ) for name, pja_dict in post_job_actions.items(): - pja = PostJobAction( pja_dict[ 'action_type' ], + model.PostJobAction( pja_dict[ 'action_type' ], step, pja_dict[ 'output_name' ], pja_dict[ 'action_arguments' ] ) # Second pass to deal with connections between steps Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.