1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/034a27f9c6c6/ changeset: 034a27f9c6c6 user: dan date: 2012-09-14 21:50:38 summary: Fix for fastq filter tests of paired_end boolean. affected #: 1 file diff -r be38ea1ed21376549a244cf29bb6d1b0bd73059f -r 034a27f9c6c687803b337024c526d9b42c6a25b2 tools/fastq/fastq_filter.xml --- a/tools/fastq/fastq_filter.xml +++ b/tools/fastq/fastq_filter.xml @@ -111,7 +111,7 @@ <param name="min_quality" value="0"/><param name="max_quality" value="0"/><param name="max_num_deviants" value="0"/> - <param name="paired_end" value="single_end"/> + <param name="paired_end" value="False"/><param name="base_offset_type" value="offsets_absolute"/><param name="left_column_offset" value="0"/><param name="right_column_offset" value="0"/> @@ -127,7 +127,7 @@ <param name="min_quality" value="-5"/><param name="max_quality" value="0"/><param name="max_num_deviants" value="0"/> - <param name="paired_end" value="single_end"/> + <param name="paired_end" value="False"/><param name="base_offset_type" value="offsets_absolute"/><param name="left_column_offset" value="0"/><param name="right_column_offset" value="0"/> @@ -144,7 +144,7 @@ <param name="min_quality" value="0"/><param name="max_quality" value="0"/><param name="max_num_deviants" value="0"/> - <param name="paired_end" value="single_end"/> + <param name="paired_end" value="False"/><param name="base_offset_type" value="offsets_absolute"/><param name="left_column_offset" value="0"/><param name="right_column_offset" value="0"/> @@ -161,7 +161,7 @@ <param name="min_quality" value="1"/><param name="max_quality" value="0"/><param name="max_num_deviants" value="0"/> - <param name="paired_end" value="single_end"/> + <param name="paired_end" value="False"/><param name="base_offset_type" value="offsets_absolute"/><param name="left_column_offset" value="0"/><param name="right_column_offset" value="0"/> @@ -177,7 +177,7 @@ <param name="min_quality" value="-4"/><param name="max_quality" value="0"/><param name="max_num_deviants" value="0"/> - <param name="paired_end" value="single_end"/> + <param name="paired_end" value="False"/><param name="base_offset_type" value="offsets_absolute"/><param name="left_column_offset" value="0"/><param name="right_column_offset" value="0"/> @@ -194,7 +194,7 @@ <param name="min_quality" value="1"/><param name="max_quality" value="0"/><param name="max_num_deviants" value="1"/> - <param name="paired_end" value="single_end"/> + <param name="paired_end" value="False"/><param name="base_offset_type" value="offsets_absolute"/><param name="left_column_offset" value="0"/><param name="right_column_offset" value="0"/> @@ -210,7 +210,7 @@ <param name="min_quality" value="-5"/><param name="max_quality" value="61"/><param name="max_num_deviants" value="1"/> - <param name="paired_end" value="single_end"/> + <param name="paired_end" value="False"/><param name="base_offset_type" value="offsets_absolute"/><param name="left_column_offset" value="0"/><param name="right_column_offset" value="0"/> @@ -227,7 +227,7 @@ <param name="min_quality" value="0"/><param name="max_quality" value="0"/><param name="max_num_deviants" value="0"/> - <param name="paired_end" value="single_end"/> + <param name="paired_end" value="False"/><param name="base_offset_type" value="offsets_absolute"/><param name="left_column_offset" value="1"/><param name="right_column_offset" value="1"/> @@ -243,7 +243,7 @@ <param name="min_quality" value="0"/><param name="max_quality" value="0"/><param name="max_num_deviants" value="0"/> - <param name="paired_end" value="single_end"/> + <param name="paired_end" value="False"/><param name="base_offset_type" value="offsets_absolute"/><param name="left_column_offset" value="1"/><param name="right_column_offset" value="1"/> @@ -260,7 +260,7 @@ <param name="min_quality" value="0"/><param name="max_quality" value="0"/><param name="max_num_deviants" value="0"/> - <param name="paired_end" value="single_end"/> + <param name="paired_end" value="False"/><param name="base_offset_type" value="offsets_percent"/><param name="left_column_offset" value="1.075"/><param name="right_column_offset" value="1.075"/> @@ -276,7 +276,7 @@ <param name="min_quality" value="0"/><param name="max_quality" value="0"/><param name="max_num_deviants" value="0"/> - <param name="paired_end" value="single_end"/> + <param name="paired_end" value="True"/><param name="base_offset_type" value="offsets_percent"/><param name="left_column_offset" value="1"/><param name="right_column_offset" value="1"/> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.