1 new changeset in galaxy-central: http://bitbucket.org/galaxy/galaxy-central/changeset/3f2e99f97694/ changeset: 3f2e99f97694 user: kanwei date: 2011-06-09 23:49:20 summary: VCF can take floats affected #: 2 files (98 bytes) --- a/lib/galaxy/visualization/tracks/data_providers.py Thu Jun 09 15:58:25 2011 -0400 +++ b/lib/galaxy/visualization/tracks/data_providers.py Thu Jun 09 17:49:20 2011 -0400 @@ -637,7 +637,7 @@ # alternative base(s) feature[4], # phred quality score - int( feature[5] )] + float( feature[5] )] rval.append(payload) return { 'data_type' : 'vcf', 'data': rval, 'message': message } --- a/lib/galaxy_utils/sequence/vcf.py Thu Jun 09 15:58:25 2011 -0400 +++ b/lib/galaxy_utils/sequence/vcf.py Thu Jun 09 17:49:20 2011 -0400 @@ -1,6 +1,5 @@ #Dan Blankenberg -#See: http://1000genomes.org/wiki/doku.php?id=1000_genomes:analysis:vcf3.3 -#See: http://1000genomes.org/wiki/doku.php?id=1000_genomes:analysis:variant_call_f... +# See http://www.1000genomes.org/wiki/Analysis/variant-call-format NOT_A_NUMBER = float( 'NaN' ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.