Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a2d99e30c727e7050c1fd6218603b7b2941c8c4d https://github.com/galaxyproject/galaxy/commit/a2d99e30c727e7050c1fd6218603b... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-08-23 (Thu, 23 Aug 2018) Changed paths: M lib/galaxy/dependencies/dev-requirements.txt M lib/galaxy/dependencies/pipfiles/default/Pipfile A lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt R lib/galaxy/dependencies/pipfiles/develop/Pipfile R lib/galaxy/dependencies/pipfiles/develop/pinned-requirements.txt M lib/galaxy/dependencies/pipfiles/flake8/pinned-requirements.txt M lib/galaxy/dependencies/pipfiles/update.sh Log Message: ----------- Update all dependencies Also merge dev dependencies in default Pipfile. Commit: ea42956c6c3a02435a9a0f6f43ae653cb9d9bd00 https://github.com/galaxyproject/galaxy/commit/ea42956c6c3a02435a9a0f6f43ae6... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-08-23 (Thu, 23 Aug 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/roles.py Log Message: ----------- Catch all exception types when decoding an id Under Python 3 `codecs.decode()` raises a `binascii.Error` exception instead of a `TypeError`. Fix the following traceback produced by the `test/api/test_roles.py::RolesApiTestCase::test_show_error_codes` API test under Python 3: ``` galaxy.web.framework.decorators ERROR 2018-08-22 22:17:47,960 Uncaught exception in exposed API method: Traceback (most recent call last): File "/galaxy_venv3/lib/python3.5/encodings/hex_codec.py", line 19, in hex_decode return (binascii.a2b_hex(input), len(input)) binascii.Error: Odd-length string The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/galaxy/lib/galaxy/web/framework/decorators.py", line 157, in decorator rval = func(self, trans, *args, **kwargs) File "/galaxy/lib/galaxy/webapps/galaxy/api/roles.py", line 39, in show decoded_role_id = trans.security.decode_id(role_id) File "/galaxy/lib/galaxy/web/security/__init__.py", line 84, in decode_id return int(unicodify(id_cipher.decrypt(codecs.decode(obj_id, 'hex'))).lstrip("!")) binascii.Error: decoding with 'hex' codec failed (Error: Odd-length string) ``` See https://jenkins.galaxyproject.org/job/docker-api-py3/140/testReport/junit/te... Commit: 6220a557f7661a3f658450530bf485914b657f5e https://github.com/galaxyproject/galaxy/commit/6220a557f7661a3f658450530bf48... Author: Martin Cech <marten@bx.psu.edu> Date: 2018-08-23 (Thu, 23 Aug 2018) Changed paths: M lib/galaxy/dependencies/dev-requirements.txt M lib/galaxy/dependencies/pipfiles/default/Pipfile A lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt R lib/galaxy/dependencies/pipfiles/develop/Pipfile R lib/galaxy/dependencies/pipfiles/develop/pinned-requirements.txt M lib/galaxy/dependencies/pipfiles/flake8/pinned-requirements.txt M lib/galaxy/dependencies/pipfiles/update.sh M lib/galaxy/webapps/galaxy/api/roles.py Log Message: ----------- Merge pull request #6628 from nsoranzo/update_deps Update all dependencies Compare: https://github.com/galaxyproject/galaxy/compare/6ad304976ecb...6220a557f766 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.