[galaxy-commits] commit/galaxy-central: 2 new changesets

15 Nov 2012

2 new commits in galaxy-central:


https://bitbucket.org/galaxy/galaxy-central/changeset/dae89d6c6e82/
changeset:   dae89d6c6e82
user:        carlfeberhard
date:        2012-11-15 19:11:21
summary:     history panel: fix to template name
affected #:  1 file

diff -r 8e52e426487bf732d051e538ac4cd7d352aa5065 -r dae89d6c6e82a095cd07d0ffa124f76d659863bc static/scripts/templates/compiled/template-hda-failedMetadata.js

--- /dev/null
+++ b/static/scripts/templates/compiled/template-hda-failedMetadata.js
@@ -0,0 +1,33 @@
+(function() {
+  var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {};
+templates['template-hda-failedMetadata'] = template(function (Handlebars,depth0,helpers,partials,data) {
+  helpers = helpers || Handlebars.helpers;
+  var stack1, foundHelper, self=this, functionType="function", blockHelperMissing=helpers.blockHelperMissing, escapeExpression=this.escapeExpression;
+
+function program1(depth0,data) {
+  
+  var buffer = "", stack1, foundHelper;
+  buffer += "\n";
+  foundHelper = helpers.local;
+  if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(2, program2, data)}); }
+  else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1() : stack1; }
+  if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(2, program2, data)}); }
+  if(stack1 || stack1 === 0) { buffer += stack1; }
+  buffer += "\nYou may be able to <a href=\"";
+  stack1 = depth0.urls;
+  stack1 = stack1 == null || stack1 === false ? stack1 : stack1.edit;
+  stack1 = typeof stack1 === functionType ? stack1() : stack1;
+  buffer += escapeExpression(stack1) + "\" target=\"galaxy_main\">set it manually or retry auto-detection</a>.\n";
+  return buffer;}
+function program2(depth0,data) {
+  
+  
+  return "An error occurred setting the metadata for this dataset.";}
+
+  foundHelper = helpers.warningmessagesmall;
+  if (foundHelper) { stack1 = foundHelper.call(depth0, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); }
+  else { stack1 = depth0.warningmessagesmall; stack1 = typeof stack1 === functionType ? stack1() : stack1; }
+  if (!helpers.warningmessagesmall) { stack1 = blockHelperMissing.call(depth0, stack1, {hash:{},inverse:self.noop,fn:self.program(1, program1, data)}); }
+  if(stack1 || stack1 === 0) { return stack1; }
+  else { return ''; }});
+})();
\ No newline at end of file



https://bitbucket.org/galaxy/galaxy-central/changeset/b0afeaf880fc/
changeset:   b0afeaf880fc
user:        carlfeberhard
date:        2012-11-15 19:11:56
summary:     pack scripts
affected #:  4 files

diff -r dae89d6c6e82a095cd07d0ffa124f76d659863bc -r b0afeaf880fc9913abc1ddffab25b953f2359fea static/scripts/packed/mvc/dataset/hda-base.js
--- a/static/scripts/packed/mvc/dataset/hda-base.js
+++ b/static/scripts/packed/mvc/dataset/hda-base.js
@@ -1,1 +1,1 @@
-var HDABaseView=BaseView.extend(LoggableMixin).extend({tagName:"div",className:"historyItemContainer",initialize:function(a){this.log(this+".initialize:",a);this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton];if(!a.urlTemplates){throw ("HDAView needs urlTemplates on initialize")}this.urls=this._renderUrls(a.urlTemplates,this.model.toJSON());this.expanded=a.expanded||false;this.model.bind("change",this.render,this)},_renderUrls:function(d,a){var b=this,c={};_.each(d,function(e,f){if(_.isObject(e)){c[f]=b._renderUrls(e,a)}else{if(f==="meta_download"){c[f]=b._renderMetaDownloadUrls(e,a)}else{c[f]=_.template(e,a)}}});return c},_renderMetaDownloadUrls:function(b,a){return _.map(a.meta_files,function(c){return{url:_.template(b,{id:a.id,file_type:c.file_type}),file_type:c.file_type}})},render:function(){var b=this,e=this.model.get("id"),c=this.model.get("state"),a=$("<div/>").attr("id","historyItem-"+e),d=(this.$el.children().size()===0);this.$el.attr("id","historyItemContainer-"+e);a.addClass("historyItemWrapper").addClass("historyItem").addClass("historyItem-"+c);a.append(this._render_warnings());a.append(this._render_titleBar());this.body=$(this._render_body());a.append(this.body);make_popup_menus(a);a.find(".tooltip").tooltip({placement:"bottom"});this.$el.fadeOut("fast",function(){b.$el.children().remove();b.$el.append(a).fadeIn("fast",function(){b.log(b+" rendered:",b.$el);var f="rendered";if(d){f+=":initial"}else{if(b.model.inReadyState()){f+=":ready"}}b.trigger(f)})});return this},_render_warnings:function(){return $(jQuery.trim(HDABaseView.templates.messages(this.model.toJSON())))},_render_titleBar:function(){var a=$('<div class="historyItemTitleBar" style="overflow: hidden"></div>');a.append(this._render_titleButtons());a.append('<span class="state-icon"></span>');a.append(this._render_titleLink());return a},_render_titleButtons:function(){var a=$('<div class="historyItemButtons"></div>');a.append(this._render_displayButton());return a},_render_displayButton:function(){if((!this.model.inReadyState())||(this.model.get("state")===HistoryDatasetAssociation.STATES.ERROR)||(this.model.get("state")===HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){this.displayButton=null;return null}var a={icon_class:"display",target:"galaxy_main"};if(this.model.get("purged")){a.enabled=false;a.title=_l("Cannot display datasets removed from disk")}else{a.title=_l("Display data in browser");a.href=this.urls.display}this.displayButton=new IconButtonView({model:new IconButton(a)});return this.displayButton.render().$el},_render_titleLink:function(){return $(jQuery.trim(HDABaseView.templates.titleLink(_.extend(this.model.toJSON(),{urls:this.urls}))))},_render_hdaSummary:function(){var a=_.extend(this.model.toJSON(),{urls:this.urls});return HDABaseView.templates.hdaSummary(a)},_render_primaryActionButtons:function(c){var a=this,b=$("<div/>").attr("id","primary-actions-"+this.model.get("id"));_.each(c,function(d){b.append(d.call(a))});return b},_render_downloadButton:function(){if(this.model.get("purged")||!this.model.hasData()){return null}var a=HDABaseView.templates.downloadLinks(_.extend(this.model.toJSON(),{urls:this.urls}));return $(a)},_render_showParamsButton:function(){this.showParamsButton=new IconButtonView({model:new IconButton({title:_l("View details"),href:this.urls.show_params,target:"galaxy_main",icon_class:"information"})});return this.showParamsButton.render().$el},_render_displayApps:function(){if(!this.model.hasData()){return null}var a=$("<div/>").addClass("display-apps");if(!_.isEmpty(this.model.get("display_types"))){a.append(HDABaseView.templates.displayApps({displayApps:this.model.get("display_types")}))}if(!_.isEmpty(this.model.get("display_apps"))){a.append(HDABaseView.templates.displayApps({displayApps:this.model.get("display_apps")}))}return a},_render_peek:function(){if(!this.model.get("peek")){return null}return $("<div/>").append($("<pre/>").attr("id","peek"+this.model.get("id")).addClass("peek").append(this.model.get("peek")))},_render_body:function(){var a=$("<div/>").attr("id","info-"+this.model.get("id")).addClass("historyItemBody").attr("style","display: block");switch(this.model.get("state")){case HistoryDatasetAssociation.STATES.NOT_VIEWABLE:this._render_body_not_viewable(a);break;case HistoryDatasetAssociation.STATES.UPLOAD:this._render_body_uploading(a);break;case HistoryDatasetAssociation.STATES.QUEUED:this._render_body_queued(a);break;case HistoryDatasetAssociation.STATES.RUNNING:this._render_body_running(a);break;case HistoryDatasetAssociation.STATES.ERROR:this._render_body_error(a);break;case HistoryDatasetAssociation.STATES.DISCARDED:this._render_body_discarded(a);break;case HistoryDatasetAssociation.STATES.SETTING_METADATA:this._render_body_setting_metadata(a);break;case HistoryDatasetAssociation.STATES.EMPTY:this._render_body_empty(a);break;case HistoryDatasetAssociation.STATES.FAILED_METADATA:this._render_body_failed_metadata(a);break;case HistoryDatasetAssociation.STATES.OK:this._render_body_ok(a);break;default:a.append($('<div>Error: unknown dataset state "'+state+'".</div>'))}a.append('<div style="clear: both"></div>');if(this.expanded){a.show()}else{a.hide()}return a},_render_body_not_viewable:function(a){a.append($("<div>"+_l("You do not have permission to view dataset")+".</div>"))},_render_body_uploading:function(a){a.append($("<div>"+_l("Dataset is uploading")+"</div>"))},_render_body_queued:function(a){a.append($("<div>"+_l("Job is waiting to run")+".</div>"));a.append(this._render_primaryActionButtons(this.defaultPrimaryActionButtonRenderers))},_render_body_running:function(a){a.append("<div>"+_l("Job is currently running")+".</div>");a.append(this._render_primaryActionButtons(this.defaultPrimaryActionButtonRenderers))},_render_body_error:function(a){if(!this.model.get("purged")){a.append($("<div>"+this.model.get("misc_blurb")+"</div>"))}a.append((_l("An error occurred running this job")+": <i>"+$.trim(this.model.get("misc_info"))+"</i>"));a.append(this._render_primaryActionButtons(this.defaultPrimaryActionButtonRenderers.concat([this._render_downloadButton])))},_render_body_discarded:function(a){a.append("<div>"+_l("The job creating this dataset was cancelled before completion")+".</div>");a.append(this._render_primaryActionButtons(this.defaultPrimaryActionButtonRenderers))},_render_body_setting_metadata:function(a){a.append($("<div>"+_l("Metadata is being auto-detected")+".</div>"))},_render_body_empty:function(a){a.append($("<div>"+_l("No data")+": <i>"+this.model.get("misc_blurb")+"</i></div>"));a.append(this._render_primaryActionButtons(this.defaultPrimaryActionButtonRenderers))},_render_body_failed_metadata:function(a){a.append($(HDABaseView.templates.failedMetadata(this.model.toJSON())));this._render_body_ok(a)},_render_body_ok:function(a){a.append(this._render_hdaSummary());if(this.model.isDeletedOrPurged()){a.append(this._render_primaryActionButtons([this._render_downloadButton,this._render_showParamsButton]));return}a.append(this._render_primaryActionButtons([this._render_downloadButton,this._render_showParamsButton]));a.append('<div class="clear"/>');a.append(this._render_displayApps());a.append(this._render_peek())},events:{"click .historyItemTitle":"toggleBodyVisibility"},toggleBodyVisibility:function(c,a){var b=this,d=this.$el.find(".historyItemBody");a=(a===undefined)?(!d.is(":visible")):(a);if(a){d.slideDown("fast",function(){b.trigger("body-expanded",b.model.get("id"))})}else{d.slideUp("fast",function(){b.trigger("body-collapsed",b.model.get("id"))})}},toString:function(){var a=(this.model)?(this.model+""):("(no model)");return"HDABaseView("+a+")"}});HDABaseView.templates={warningMsg:Handlebars.templates["template-warningmessagesmall"],messages:Handlebars.templates["template-hda-warning-messages"],titleLink:Handlebars.templates["template-hda-titleLink"],hdaSummary:Handlebars.templates["template-hda-hdaSummary"],downloadLinks:Handlebars.templates["template-hda-downloadLinks"],failedMetadata:Handlebars.templates["template-hda-failedMetaData"],displayApps:Handlebars.templates["template-hda-displayApps"]};
\ No newline at end of file
+var HDABaseView=BaseView.extend(LoggableMixin).extend({tagName:"div",className:"historyItemContainer",initialize:function(a){this.log(this+".initialize:",a);this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton];if(!a.urlTemplates){throw ("HDAView needs urlTemplates on initialize")}this.urls=this._renderUrls(a.urlTemplates,this.model.toJSON());this.expanded=a.expanded||false;this.model.bind("change",this.render,this)},_renderUrls:function(d,a){var b=this,c={};_.each(d,function(e,f){if(_.isObject(e)){c[f]=b._renderUrls(e,a)}else{if(f==="meta_download"){c[f]=b._renderMetaDownloadUrls(e,a)}else{c[f]=_.template(e,a)}}});return c},_renderMetaDownloadUrls:function(b,a){return _.map(a.meta_files,function(c){return{url:_.template(b,{id:a.id,file_type:c.file_type}),file_type:c.file_type}})},render:function(){var b=this,e=this.model.get("id"),c=this.model.get("state"),a=$("<div/>").attr("id","historyItem-"+e),d=(this.$el.children().size()===0);this.$el.attr("id","historyItemContainer-"+e);a.addClass("historyItemWrapper").addClass("historyItem").addClass("historyItem-"+c);a.append(this._render_warnings());a.append(this._render_titleBar());this.body=$(this._render_body());a.append(this.body);make_popup_menus(a);a.find(".tooltip").tooltip({placement:"bottom"});this.$el.fadeOut("fast",function(){b.$el.children().remove();b.$el.append(a).fadeIn("fast",function(){b.log(b+" rendered:",b.$el);var f="rendered";if(d){f+=":initial"}else{if(b.model.inReadyState()){f+=":ready"}}b.trigger(f)})});return this},_render_warnings:function(){return $(jQuery.trim(HDABaseView.templates.messages(this.model.toJSON())))},_render_titleBar:function(){var a=$('<div class="historyItemTitleBar" style="overflow: hidden"></div>');a.append(this._render_titleButtons());a.append('<span class="state-icon"></span>');a.append(this._render_titleLink());return a},_render_titleButtons:function(){var a=$('<div class="historyItemButtons"></div>');a.append(this._render_displayButton());return a},_render_displayButton:function(){if((!this.model.inReadyState())||(this.model.get("state")===HistoryDatasetAssociation.STATES.ERROR)||(this.model.get("state")===HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){this.displayButton=null;return null}var a={icon_class:"display",target:"galaxy_main"};if(this.model.get("purged")){a.enabled=false;a.title=_l("Cannot display datasets removed from disk")}else{a.title=_l("Display data in browser");a.href=this.urls.display}this.displayButton=new IconButtonView({model:new IconButton(a)});return this.displayButton.render().$el},_render_titleLink:function(){return $(jQuery.trim(HDABaseView.templates.titleLink(_.extend(this.model.toJSON(),{urls:this.urls}))))},_render_hdaSummary:function(){var a=_.extend(this.model.toJSON(),{urls:this.urls});return HDABaseView.templates.hdaSummary(a)},_render_primaryActionButtons:function(c){var a=this,b=$("<div/>").attr("id","primary-actions-"+this.model.get("id"));_.each(c,function(d){b.append(d.call(a))});return b},_render_downloadButton:function(){if(this.model.get("purged")||!this.model.hasData()){return null}var a=HDABaseView.templates.downloadLinks(_.extend(this.model.toJSON(),{urls:this.urls}));return $(a)},_render_showParamsButton:function(){this.showParamsButton=new IconButtonView({model:new IconButton({title:_l("View details"),href:this.urls.show_params,target:"galaxy_main",icon_class:"information"})});return this.showParamsButton.render().$el},_render_displayApps:function(){if(!this.model.hasData()){return null}var a=$("<div/>").addClass("display-apps");if(!_.isEmpty(this.model.get("display_types"))){a.append(HDABaseView.templates.displayApps({displayApps:this.model.get("display_types")}))}if(!_.isEmpty(this.model.get("display_apps"))){a.append(HDABaseView.templates.displayApps({displayApps:this.model.get("display_apps")}))}return a},_render_peek:function(){if(!this.model.get("peek")){return null}return $("<div/>").append($("<pre/>").attr("id","peek"+this.model.get("id")).addClass("peek").append(this.model.get("peek")))},_render_body:function(){var a=$("<div/>").attr("id","info-"+this.model.get("id")).addClass("historyItemBody").attr("style","display: block");switch(this.model.get("state")){case HistoryDatasetAssociation.STATES.NOT_VIEWABLE:this._render_body_not_viewable(a);break;case HistoryDatasetAssociation.STATES.UPLOAD:this._render_body_uploading(a);break;case HistoryDatasetAssociation.STATES.QUEUED:this._render_body_queued(a);break;case HistoryDatasetAssociation.STATES.RUNNING:this._render_body_running(a);break;case HistoryDatasetAssociation.STATES.ERROR:this._render_body_error(a);break;case HistoryDatasetAssociation.STATES.DISCARDED:this._render_body_discarded(a);break;case HistoryDatasetAssociation.STATES.SETTING_METADATA:this._render_body_setting_metadata(a);break;case HistoryDatasetAssociation.STATES.EMPTY:this._render_body_empty(a);break;case HistoryDatasetAssociation.STATES.FAILED_METADATA:this._render_body_failed_metadata(a);break;case HistoryDatasetAssociation.STATES.OK:this._render_body_ok(a);break;default:a.append($('<div>Error: unknown dataset state "'+state+'".</div>'))}a.append('<div style="clear: both"></div>');if(this.expanded){a.show()}else{a.hide()}return a},_render_body_not_viewable:function(a){a.append($("<div>"+_l("You do not have permission to view dataset")+".</div>"))},_render_body_uploading:function(a){a.append($("<div>"+_l("Dataset is uploading")+"</div>"))},_render_body_queued:function(a){a.append($("<div>"+_l("Job is waiting to run")+".</div>"));a.append(this._render_primaryActionButtons(this.defaultPrimaryActionButtonRenderers))},_render_body_running:function(a){a.append("<div>"+_l("Job is currently running")+".</div>");a.append(this._render_primaryActionButtons(this.defaultPrimaryActionButtonRenderers))},_render_body_error:function(a){if(!this.model.get("purged")){a.append($("<div>"+this.model.get("misc_blurb")+"</div>"))}a.append((_l("An error occurred running this job")+": <i>"+$.trim(this.model.get("misc_info"))+"</i>"));a.append(this._render_primaryActionButtons(this.defaultPrimaryActionButtonRenderers.concat([this._render_downloadButton])))},_render_body_discarded:function(a){a.append("<div>"+_l("The job creating this dataset was cancelled before completion")+".</div>");a.append(this._render_primaryActionButtons(this.defaultPrimaryActionButtonRenderers))},_render_body_setting_metadata:function(a){a.append($("<div>"+_l("Metadata is being auto-detected")+".</div>"))},_render_body_empty:function(a){a.append($("<div>"+_l("No data")+": <i>"+this.model.get("misc_blurb")+"</i></div>"));a.append(this._render_primaryActionButtons(this.defaultPrimaryActionButtonRenderers))},_render_body_failed_metadata:function(a){a.append($(HDABaseView.templates.failedMetadata(this.model.toJSON())));this._render_body_ok(a)},_render_body_ok:function(a){a.append(this._render_hdaSummary());if(this.model.isDeletedOrPurged()){a.append(this._render_primaryActionButtons([this._render_downloadButton,this._render_showParamsButton]));return}a.append(this._render_primaryActionButtons([this._render_downloadButton,this._render_showParamsButton]));a.append('<div class="clear"/>');a.append(this._render_displayApps());a.append(this._render_peek())},events:{"click .historyItemTitle":"toggleBodyVisibility"},toggleBodyVisibility:function(c,a){var b=this,d=this.$el.find(".historyItemBody");a=(a===undefined)?(!d.is(":visible")):(a);if(a){d.slideDown("fast",function(){b.trigger("body-expanded",b.model.get("id"))})}else{d.slideUp("fast",function(){b.trigger("body-collapsed",b.model.get("id"))})}},toString:function(){var a=(this.model)?(this.model+""):("(no model)");return"HDABaseView("+a+")"}});HDABaseView.templates={warningMsg:Handlebars.templates["template-warningmessagesmall"],messages:Handlebars.templates["template-hda-warning-messages"],titleLink:Handlebars.templates["template-hda-titleLink"],hdaSummary:Handlebars.templates["template-hda-hdaSummary"],downloadLinks:Handlebars.templates["template-hda-downloadLinks"],failedMetadata:Handlebars.templates["template-hda-failedMetadata"],displayApps:Handlebars.templates["template-hda-displayApps"]};
\ No newline at end of file


diff -r dae89d6c6e82a095cd07d0ffa124f76d659863bc -r b0afeaf880fc9913abc1ddffab25b953f2359fea static/scripts/packed/mvc/history/history-panel.js
--- a/static/scripts/packed/mvc/history/history-panel.js
+++ b/static/scripts/packed/mvc/history/history-panel.js
@@ -1,1 +1,1 @@
-var HistoryPanel=BaseView.extend(LoggableMixin).extend({el:"body.historyPage",HDAView:HDAEditView,events:{"click #history-tag":"loadAndDisplayTags"},initialize:function(a){this.log(this+".initialize:",a);if(!a.urlTemplates){throw (this+" needs urlTemplates on initialize")}if(!a.urlTemplates.history){throw (this+" needs urlTemplates.history on initialize")}if(!a.urlTemplates.hda){throw (this+" needs urlTemplates.hda on initialize")}this.urlTemplates=a.urlTemplates.history;this.hdaUrlTemplates=a.urlTemplates.hda;this._setUpWebStorage(a.initiallyExpanded,a.show_deleted,a.show_hidden);this.model.bind("change:nice_size",this.updateHistoryDiskSize,this);this.model.hdas.bind("add",this.add,this);this.model.hdas.bind("reset",this.addAll,this);this.hdaViews={};this.urls={}},_setUpWebStorage:function(b,a,c){this.storage=new PersistantStorage("HistoryView."+this.model.get("id"),{expandedHdas:{},show_deleted:false,show_hidden:false});this.log("this.storage:",this.storage.get());if(b){this.storage.set("exandedHdas",b)}if((a===true)||(a===false)){this.storage.set("show_deleted",a)}if((c===true)||(c===false)){this.storage.set("show_hidden",c)}this.show_deleted=this.storage.get("show_deleted");this.show_hidden=this.storage.get("show_hidden");this.log("(init'd) this.storage:",this.storage.get())},add:function(a){},addAll:function(){this.render()},render:function(){var b=this,d=b.toString()+".set-up",c=$("<div/>"),a=this.model.toJSON(),e=(this.$el.children().size()===0);a.urls=this._renderUrls(a);c.append(HistoryPanel.templates.historyPanel(a));c.find(".tooltip").tooltip({placement:"bottom"});this._setUpActionButton(c.find("#history-action-popup"));if(!this.model.hdas.length||!this.renderItems(c.find("#"+this.model.get("id")+"-datasets"))){c.find("#emptyHistoryMessage").show()}$(b).queue(d,function(f){b.$el.fadeOut("fast",function(){f()})});$(b).queue(d,function(f){b.$el.html("");b.$el.append(c.children());b.$el.fadeIn("fast",function(){f()})});$(b).queue(d,function(f){this.log(b+" rendered:",b.$el);b._setUpBehaviours();if(e){b.trigger("rendered:initial")}else{b.trigger("rendered")}f()});$(b).dequeue(d);return this},_renderUrls:function(a){var b=this;b.urls={};_.each(this.urlTemplates,function(d,c){b.urls[c]=_.template(d,a)});return b.urls},_setUpActionButton:function(e){var c=this,d=(this.storage.get("show_deleted"))?("Hide deleted"):("Show deleted"),a=(this.storage.get("show_hidden"))?("Hide hidden"):("Show hidden"),b={};b[_l("refresh")]=function(){window.location.reload()};b[_l("collapse all")]=function(){c.hideAllHdaBodies()};b[_l(d)]=function(){c.toggleShowDeleted()};b[_l(a)]=function(){c.toggleShowHidden()};make_popupmenu(e,b)},renderItems:function(b){this.hdaViews={};var a=this,c=this.model.hdas.getVisible(this.storage.get("show_deleted"),this.storage.get("show_hidden"));_.each(c,function(f){var e=f.get("id"),d=a.storage.get("expandedHdas").get(e);a.hdaViews[e]=new a.HDAView({model:f,expanded:d,urlTemplates:a.hdaUrlTemplates});a._setUpHdaListeners(a.hdaViews[e]);b.prepend(a.hdaViews[e].render().$el)});return c.length},_setUpHdaListeners:function(b){var a=this;b.bind("body-expanded",function(c){a.storage.get("expandedHdas").set(c,true)});b.bind("body-collapsed",function(c){a.storage.get("expandedHdas").deleteKey(c)})},_setUpBehaviours:function(){if(!(this.model.get("user")&&this.model.get("user").email)){return}var a=this.$("#history-annotation-area");this.$("#history-annotate").click(function(){if(a.is(":hidden")){a.slideDown("fast")}else{a.slideUp("fast")}return false});async_save_text("history-name-container","history-name",this.urls.rename,"new_name",18);async_save_text("history-annotation-container","history-annotation",this.urls.annotate,"new_annotation",18,true,4)},updateHistoryDiskSize:function(){this.$el.find("#history-size").text(this.model.get("nice_size"))},showQuotaMessage:function(){var a=this.$el.find("#quota-message-container");if(a.is(":hidden")){a.slideDown("fast")}},hideQuotaMessage:function(){var a=this.$el.find("#quota-message-container");if(!a.is(":hidden")){a.slideUp("fast")}},toggleShowDeleted:function(){this.storage.set("show_deleted",!this.storage.get("show_deleted"));this.render()},toggleShowHidden:function(){this.storage.set("show_hidden",!this.storage.get("show_hidden"));this.render()},hideAllHdaBodies:function(){_.each(this.hdaViews,function(a){a.toggleBodyVisibility(null,false)});this.storage.set("expandedHdas",{})},loadAndDisplayTags:function(c){this.log(this+".loadAndDisplayTags",c);var d=this.$el.find("#history-tag-area"),b=d.find(".tag-elt");this.log("\t tagArea",d," tagElt",b);if(d.is(":hidden")){if(!jQuery.trim(b.html())){var a=this;$.ajax({url:a.urls.tag,error:function(){alert(_l("Tagging failed"))},success:function(e){b.html(e);b.find(".tooltip").tooltip();d.slideDown("fast")}})}else{d.slideDown("fast")}}else{d.slideUp("fast")}return false},toString:function(){var a=this.model.get("name")||"";return"HistoryPanel("+a+")"}});HistoryPanel.templates={historyPanel:Handlebars.templates["template-history-historyPanel"]};
\ No newline at end of file
+var HistoryPanel=BaseView.extend(LoggableMixin).extend({el:"body.historyPage",HDAView:HDAEditView,events:{"click #history-refresh":function(){window.location.reload()},"click #history-tag":"loadAndDisplayTags"},initialize:function(a){this.log(this+".initialize:",a);if(!a.urlTemplates){throw (this+" needs urlTemplates on initialize")}if(!a.urlTemplates.history){throw (this+" needs urlTemplates.history on initialize")}if(!a.urlTemplates.hda){throw (this+" needs urlTemplates.hda on initialize")}this.urlTemplates=a.urlTemplates.history;this.hdaUrlTemplates=a.urlTemplates.hda;this._setUpWebStorage(a.initiallyExpanded,a.show_deleted,a.show_hidden);this.model.bind("change:nice_size",this.updateHistoryDiskSize,this);this.model.hdas.bind("add",this.add,this);this.model.hdas.bind("reset",this.addAll,this);this.hdaViews={};this.urls={}},_setUpWebStorage:function(b,a,c){this.storage=new PersistantStorage("HistoryView."+this.model.get("id"),{expandedHdas:{},show_deleted:false,show_hidden:false});this.log("this.storage:",this.storage.get());if(b){this.storage.set("exandedHdas",b)}if((a===true)||(a===false)){this.storage.set("show_deleted",a)}if((c===true)||(c===false)){this.storage.set("show_hidden",c)}this.show_deleted=this.storage.get("show_deleted");this.show_hidden=this.storage.get("show_hidden");this.log("(init'd) this.storage:",this.storage.get())},add:function(a){},addAll:function(){this.render()},render:function(){var b=this,d=b.toString()+".set-up",c=$("<div/>"),a=this.model.toJSON(),e=(this.$el.children().size()===0);a.urls=this._renderUrls(a);c.append(HistoryPanel.templates.historyPanel(a));c.find(".tooltip").tooltip({placement:"bottom"});this._setUpActionButton(c.find("#history-action-popup"));if(!this.model.hdas.length||!this.renderItems(c.find("#"+this.model.get("id")+"-datasets"))){c.find("#emptyHistoryMessage").show()}$(b).queue(d,function(f){b.$el.fadeOut("fast",function(){f()})});$(b).queue(d,function(f){b.$el.html("");b.$el.append(c.children());b.$el.fadeIn("fast",function(){f()})});$(b).queue(d,function(f){this.log(b+" rendered:",b.$el);b._setUpBehaviours();if(e){b.trigger("rendered:initial")}else{b.trigger("rendered")}f()});$(b).dequeue(d);return this},_renderUrls:function(a){var b=this;b.urls={};_.each(this.urlTemplates,function(d,c){b.urls[c]=_.template(d,a)});return b.urls},_setUpActionButton:function(e){var c=this,d=(this.storage.get("show_deleted"))?("Hide deleted"):("Show deleted"),a=(this.storage.get("show_hidden"))?("Hide hidden"):("Show hidden"),b={};b[_l("collapse all")]=function(){c.hideAllHdaBodies()};b[_l(d)]=function(){c.toggleShowDeleted()};b[_l(a)]=function(){c.toggleShowHidden()};make_popupmenu(e,b)},renderItems:function(b){this.hdaViews={};var a=this,c=this.model.hdas.getVisible(this.storage.get("show_deleted"),this.storage.get("show_hidden"));_.each(c,function(f){var e=f.get("id"),d=a.storage.get("expandedHdas").get(e);a.hdaViews[e]=new a.HDAView({model:f,expanded:d,urlTemplates:a.hdaUrlTemplates});a._setUpHdaListeners(a.hdaViews[e]);b.prepend(a.hdaViews[e].render().$el)});return c.length},_setUpHdaListeners:function(b){var a=this;b.bind("body-expanded",function(c){a.storage.get("expandedHdas").set(c,true)});b.bind("body-collapsed",function(c){a.storage.get("expandedHdas").deleteKey(c)})},_setUpBehaviours:function(){if(!(this.model.get("user")&&this.model.get("user").email)){return}var a=this.$("#history-annotation-area");this.$("#history-annotate").click(function(){if(a.is(":hidden")){a.slideDown("fast")}else{a.slideUp("fast")}return false});async_save_text("history-name-container","history-name",this.urls.rename,"new_name",18);async_save_text("history-annotation-container","history-annotation",this.urls.annotate,"new_annotation",18,true,4)},updateHistoryDiskSize:function(){this.$el.find("#history-size").text(this.model.get("nice_size"))},showQuotaMessage:function(){var a=this.$el.find("#quota-message-container");if(a.is(":hidden")){a.slideDown("fast")}},hideQuotaMessage:function(){var a=this.$el.find("#quota-message-container");if(!a.is(":hidden")){a.slideUp("fast")}},toggleShowDeleted:function(){this.storage.set("show_deleted",!this.storage.get("show_deleted"));this.render()},toggleShowHidden:function(){this.storage.set("show_hidden",!this.storage.get("show_hidden"));this.render()},hideAllHdaBodies:function(){_.each(this.hdaViews,function(a){a.toggleBodyVisibility(null,false)});this.storage.set("expandedHdas",{})},loadAndDisplayTags:function(c){this.log(this+".loadAndDisplayTags",c);var d=this.$el.find("#history-tag-area"),b=d.find(".tag-elt");this.log("\t tagArea",d," tagElt",b);if(d.is(":hidden")){if(!jQuery.trim(b.html())){var a=this;$.ajax({url:a.urls.tag,error:function(){alert(_l("Tagging failed"))},success:function(e){b.html(e);b.find(".tooltip").tooltip();d.slideDown("fast")}})}else{d.slideDown("fast")}}else{d.slideUp("fast")}return false},toString:function(){var a=this.model.get("name")||"";return"HistoryPanel("+a+")"}});HistoryPanel.templates={historyPanel:Handlebars.templates["template-history-historyPanel"]};
\ No newline at end of file


diff -r dae89d6c6e82a095cd07d0ffa124f76d659863bc -r b0afeaf880fc9913abc1ddffab25b953f2359fea static/scripts/packed/templates/compiled/template-hda-failedMetaData.js
--- a/static/scripts/packed/templates/compiled/template-hda-failedMetaData.js
+++ b/static/scripts/packed/templates/compiled/template-hda-failedMetaData.js
@@ -1,1 +1,1 @@
-(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-hda-failedMetaData"]=b(function(g,m,f,l,k){f=f||g.helpers;var c,i,o=this,h="function",n=f.blockHelperMissing,j=this.escapeExpression;function e(t,s){var q="",r,p;q+="\n";p=f.local;if(p){r=p.call(t,{hash:{},inverse:o.noop,fn:o.program(2,d,s)})}else{r=t.local;r=typeof r===h?r():r}if(!f.local){r=n.call(t,r,{hash:{},inverse:o.noop,fn:o.program(2,d,s)})}if(r||r===0){q+=r}q+='\nYou may be able to <a href="';r=t.urls;r=r==null||r===false?r:r.edit;r=typeof r===h?r():r;q+=j(r)+'" target="galaxy_main">set it manually or retry auto-detection</a>.\n';return q}function d(q,p){return"An error occurred setting the metadata for this dataset."}i=f.warningmessagesmall;if(i){c=i.call(m,{hash:{},inverse:o.noop,fn:o.program(1,e,k)})}else{c=m.warningmessagesmall;c=typeof c===h?c():c}if(!f.warningmessagesmall){c=n.call(m,c,{hash:{},inverse:o.noop,fn:o.program(1,e,k)})}if(c||c===0){return c}else{return""}})})();
\ No newline at end of file
+(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-hda-failedMetadata"]=b(function(g,m,f,l,k){f=f||g.helpers;var c,i,o=this,h="function",n=f.blockHelperMissing,j=this.escapeExpression;function e(t,s){var q="",r,p;q+="\n";p=f.local;if(p){r=p.call(t,{hash:{},inverse:o.noop,fn:o.program(2,d,s)})}else{r=t.local;r=typeof r===h?r():r}if(!f.local){r=n.call(t,r,{hash:{},inverse:o.noop,fn:o.program(2,d,s)})}if(r||r===0){q+=r}q+='\nYou may be able to <a href="';r=t.urls;r=r==null||r===false?r:r.edit;r=typeof r===h?r():r;q+=j(r)+'" target="galaxy_main">set it manually or retry auto-detection</a>.\n';return q}function d(q,p){return"An error occurred setting the metadata for this dataset."}i=f.warningmessagesmall;if(i){c=i.call(m,{hash:{},inverse:o.noop,fn:o.program(1,e,k)})}else{c=m.warningmessagesmall;c=typeof c===h?c():c}if(!f.warningmessagesmall){c=n.call(m,c,{hash:{},inverse:o.noop,fn:o.program(1,e,k)})}if(c||c===0){return c}else{return""}})})();
\ No newline at end of file


diff -r dae89d6c6e82a095cd07d0ffa124f76d659863bc -r b0afeaf880fc9913abc1ddffab25b953f2359fea static/scripts/packed/templates/compiled/template-history-historyPanel.js
--- a/static/scripts/packed/templates/compiled/template-history-historyPanel.js
+++ b/static/scripts/packed/templates/compiled/template-history-historyPanel.js
@@ -1,1 +1,1 @@
-(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-history-historyPanel"]=b(function(k,A,y,q,I){y=y||k.helpers;var z="",n,m,v=this,e="function",c=y.blockHelperMissing,d=this.escapeExpression;function t(N,M){var K="",L,J;K+='\n            <div id="history-name" class="tooltip editable-text"\n                title="';J=y.local;if(J){L=J.call(N,{hash:{},inverse:v.noop,fn:v.program(2,s,M)})}else{L=N.local;L=typeof L===e?L():L}if(!y.local){L=c.call(N,L,{hash:{},inverse:v.noop,fn:v.program(2,s,M)})}if(L||L===0){K+=L}K+='">';J=y.name;if(J){L=J.call(N,{hash:{}})}else{L=N.name;L=typeof L===e?L():L}K+=d(L)+"</div>\n            ";return K}function s(K,J){return"Click to rename history"}function r(N,M){var K="",L,J;K+='\n            <div id="history-name" class="tooltip"\n                title="';J=y.local;if(J){L=J.call(N,{hash:{},inverse:v.noop,fn:v.program(5,p,M)})}else{L=N.local;L=typeof L===e?L():L}if(!y.local){L=c.call(N,L,{hash:{},inverse:v.noop,fn:v.program(5,p,M)})}if(L||L===0){K+=L}K+='">';J=y.name;if(J){L=J.call(N,{hash:{}})}else{L=N.name;L=typeof L===e?L():L}K+=d(L)+"</div>\n            ";return K}function p(K,J){return"You must be logged in to edit your history name"}function o(K,J){return"Click to see more actions for this history"}function j(N,M){var K="",L,J;K+='\n        <div id="history-secondary-links" style="float: right;">\n            <a id="history-tag" title="';J=y.local;if(J){L=J.call(N,{hash:{},inverse:v.noop,fn:v.program(10,H,M)})}else{L=N.local;L=typeof L===e?L():L}if(!y.local){L=c.call(N,L,{hash:{},inverse:v.noop,fn:v.program(10,H,M)})}if(L||L===0){K+=L}K+='"\n                class="icon-button tags tooltip" target="galaxy_main" href="javascript:void(0)"></a>\n            <a id="history-annotate" title="';J=y.local;if(J){L=J.call(N,{hash:{},inverse:v.noop,fn:v.program(12,G,M)})}else{L=N.local;L=typeof L===e?L():L}if(!y.local){L=c.call(N,L,{hash:{},inverse:v.noop,fn:v.program(12,G,M)})}if(L||L===0){K+=L}K+='"\n                class="icon-button annotate tooltip" target="galaxy_main" href="javascript:void(0)"></a>\n        </div>\n        ';return K}function H(K,J){return"Edit history tags"}function G(K,J){return"Edit history annotation"}function F(N,M){var K="",L,J;K+="\n    ";J=y.warningmessagesmall;if(J){L=J.call(N,{hash:{},inverse:v.noop,fn:v.program(15,E,M)})}else{L=N.warningmessagesmall;L=typeof L===e?L():L}if(!y.warningmessagesmall){L=c.call(N,L,{hash:{},inverse:v.noop,fn:v.program(15,E,M)})}if(L||L===0){K+=L}K+="\n    ";return K}function E(M,L){var K,J;J=y.local;if(J){K=J.call(M,{hash:{},inverse:v.noop,fn:v.program(16,D,L)})}else{K=M.local;K=typeof K===e?K():K}if(!y.local){K=c.call(M,K,{hash:{},inverse:v.noop,fn:v.program(16,D,L)})}if(K||K===0){return K}else{return""}}function D(K,J){return"You are currently viewing a deleted history!"}function C(N,M){var K="",L,J;K+='\n    <div id="history-tag-annotation">\n\n        <div id="history-tag-area" style="display: none">\n            <strong>';J=y.local;if(J){L=J.call(N,{hash:{},inverse:v.noop,fn:v.program(19,B,M)})}else{L=N.local;L=typeof L===e?L():L}if(!y.local){L=c.call(N,L,{hash:{},inverse:v.noop,fn:v.program(19,B,M)})}if(L||L===0){K+=L}K+=':</strong>\n            <div class="tag-elt"></div>\n        </div>\n\n        <div id="history-annotation-area" style="display: none">\n            <strong>';J=y.local;if(J){L=J.call(N,{hash:{},inverse:v.noop,fn:v.program(21,l,M)})}else{L=N.local;L=typeof L===e?L():L}if(!y.local){L=c.call(N,L,{hash:{},inverse:v.noop,fn:v.program(21,l,M)})}if(L||L===0){K+=L}K+=':</strong>\n            <div id="history-annotation-container">\n            <div id="history-annotation" class="tooltip editable-text"\n                title="';J=y.local;if(J){L=J.call(N,{hash:{},inverse:v.noop,fn:v.program(23,i,M)})}else{L=N.local;L=typeof L===e?L():L}if(!y.local){L=c.call(N,L,{hash:{},inverse:v.noop,fn:v.program(23,i,M)})}if(L||L===0){K+=L}K+='">\n                ';L=N.annotation;L=y["if"].call(N,L,{hash:{},inverse:v.program(27,g,M),fn:v.program(25,h,M)});if(L||L===0){K+=L}K+="\n            </div>\n            </div>\n        </div>\n    </div>\n    ";return K}function B(K,J){return"Tags"}function l(K,J){return"Annotation"}function i(K,J){return"Click to edit annotation"}function h(N,M){var K="",L,J;K+="\n                    ";J=y.annotation;if(J){L=J.call(N,{hash:{}})}else{L=N.annotation;L=typeof L===e?L():L}K+=d(L)+"\n                ";return K}function g(N,M){var K="",L,J;K+="\n                    <em>";J=y.local;if(J){L=J.call(N,{hash:{},inverse:v.noop,fn:v.program(28,f,M)})}else{L=N.local;L=typeof L===e?L():L}if(!y.local){L=c.call(N,L,{hash:{},inverse:v.noop,fn:v.program(28,f,M)})}if(L||L===0){K+=L}K+="</em>\n                ";return K}function f(K,J){return"Describe or add notes to history"}function x(N,M){var K="",L,J;K+='\n    <div id="message-container">\n        <div class="';J=y.status;if(J){L=J.call(N,{hash:{}})}else{L=N.status;L=typeof L===e?L():L}K+=d(L)+'message">\n        ';J=y.message;if(J){L=J.call(N,{hash:{}})}else{L=N.message;L=typeof L===e?L():L}K+=d(L)+"\n        </div><br />\n    </div>\n    ";return K}function w(K,J){return"You are over your disk quota.\n            Tool execution is on hold until your disk usage drops below your allocated quota."}function u(K,J){return"Your history is empty. Click 'Get Data' on the left pane to start"}z+='<div id="history-controls">\n    <div id="history-title-area" class="historyLinks">\n\n        ';z+='\n        <div id="history-name-container" style="float: left;">\n            ';z+="\n            ";n=A.user;n=n==null||n===false?n:n.email;n=y["if"].call(A,n,{hash:{},inverse:v.program(4,r,I),fn:v.program(1,t,I)});if(n||n===0){z+=n}z+='\n        </div>\n\n        <a id="history-action-popup" class="tooltip" title="';m=y.local;if(m){n=m.call(A,{hash:{},inverse:v.noop,fn:v.program(7,o,I)})}else{n=A.local;n=typeof n===e?n():n}if(!y.local){n=c.call(A,n,{hash:{},inverse:v.noop,fn:v.program(7,o,I)})}if(n||n===0){z+=n}z+='"\n            href="javascript:void(0);" style="float: right;">\n            <span class="ficon cogs large"></span>\n        </a>\n        <div style="clear: both;"></div>\n    </div>\n\n    <div id="history-subtitle-area">\n        <div id="history-size" style="float:left;">';m=y.nice_size;if(m){n=m.call(A,{hash:{}})}else{n=A.nice_size;n=typeof n===e?n():n}z+=d(n)+"</div>\n        ";n=A.user;n=n==null||n===false?n:n.email;n=y["if"].call(A,n,{hash:{},inverse:v.noop,fn:v.program(9,j,I)});if(n||n===0){z+=n}z+='\n        <div style="clear: both;"></div>\n    </div>\n\n    ';n=A.deleted;n=y["if"].call(A,n,{hash:{},inverse:v.noop,fn:v.program(14,F,I)});if(n||n===0){z+=n}z+="\n\n    ";z+="\n    ";z+="\n    ";n=A.user;n=n==null||n===false?n:n.email;n=y["if"].call(A,n,{hash:{},inverse:v.noop,fn:v.program(18,C,I)});if(n||n===0){z+=n}z+="\n\n    ";n=A.message;n=y["if"].call(A,n,{hash:{},inverse:v.noop,fn:v.program(30,x,I)});if(n||n===0){z+=n}z+='\n\n    <div id="quota-message-container" style="display: none">\n        <div id="quota-message" class="errormessage">\n            ';m=y.local;if(m){n=m.call(A,{hash:{},inverse:v.noop,fn:v.program(32,w,I)})}else{n=A.local;n=typeof n===e?n():n}if(!y.local){n=c.call(A,n,{hash:{},inverse:v.noop,fn:v.program(32,w,I)})}if(n||n===0){z+=n}z+='\n        </div>\n    </div>\n</div>\n\n<div id="';m=y.id;if(m){n=m.call(A,{hash:{}})}else{n=A.id;n=typeof n===e?n():n}z+=d(n)+'-datasets" class="history-datasets-list"></div>\n\n<div class="infomessagesmall" id="emptyHistoryMessage" style="display: none;">\n    ';m=y.local;if(m){n=m.call(A,{hash:{},inverse:v.noop,fn:v.program(34,u,I)})}else{n=A.local;n=typeof n===e?n():n}if(!y.local){n=c.call(A,n,{hash:{},inverse:v.noop,fn:v.program(34,u,I)})}if(n||n===0){z+=n}z+="\n</div>";return z})})();
\ No newline at end of file
+(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-history-historyPanel"]=b(function(j,C,A,r,J){A=A||j.helpers;var B="",n,m,x=this,f="function",c=A.blockHelperMissing,e=this.escapeExpression;function u(O,N){var L="",M,K;L+='\n            <div id="history-name" class="tooltip editable-text"\n                title="';K=A.local;if(K){M=K.call(O,{hash:{},inverse:x.noop,fn:x.program(2,t,N)})}else{M=O.local;M=typeof M===f?M():M}if(!A.local){M=c.call(O,M,{hash:{},inverse:x.noop,fn:x.program(2,t,N)})}if(M||M===0){L+=M}L+='">';K=A.name;if(K){M=K.call(O,{hash:{}})}else{M=O.name;M=typeof M===f?M():M}L+=e(M)+"</div>\n            ";return L}function t(L,K){return"Click to rename history"}function s(O,N){var L="",M,K;L+='\n            <div id="history-name" class="tooltip"\n                title="';K=A.local;if(K){M=K.call(O,{hash:{},inverse:x.noop,fn:x.program(5,q,N)})}else{M=O.local;M=typeof 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\ No newline at end of file

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[galaxy-commits] commit/galaxy-central: 2 new changesets

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