1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/a46ac538684e/ Changeset: a46ac538684e User: dan Date: 2013-12-13 20:28:54 Summary: Move debug logging statement for external metadata command so that it includes the dependency shell commands, if any. Affected #: 1 file diff -r 5fb649265c513d6efd1e9d6c93ab06e6996e2008 -r a46ac538684e86002e5386aefb7a6c3b921eae45 lib/galaxy/jobs/runners/__init__.py --- a/lib/galaxy/jobs/runners/__init__.py +++ b/lib/galaxy/jobs/runners/__init__.py @@ -212,13 +212,13 @@ tmp_dir=job_wrapper.working_directory, #we don't want to overwrite metadata that was copied over in init_meta(), as per established behavior kwds={ 'overwrite' : False } ) - log.debug( 'executing external set_meta script for job %d: %s' % ( job_wrapper.job_id, external_metadata_script ) ) if resolve_requirements: dependency_shell_commands = self.app.datatypes_registry.set_external_metadata_tool.build_dependency_shell_commands() if dependency_shell_commands: if isinstance( dependency_shell_commands, list ): dependency_shell_commands = "&&".join( dependency_shell_commands ) external_metadata_script = "%s&&%s" % ( dependency_shell_commands, external_metadata_script ) + log.debug( 'executing external set_meta script for job %d: %s' % ( job_wrapper.job_id, external_metadata_script ) ) external_metadata_proc = subprocess.Popen( args=external_metadata_script, shell=True, env=os.environ, Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.