Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: 68a66f462e007fdbcf8e966fc5cc1a7ea06a8527 https://github.com/galaxyproject/galaxy/commit/68a66f462e007fdbcf8e966fc5cc1... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths: M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
Log Message: ----------- update h5py dependency
Commit: d79514b823371c36c12dcbb6aef25a4490cd50ca https://github.com/galaxyproject/galaxy/commit/d79514b823371c36c12dcbb6aef25... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths: M lib/galaxy/tools/verify/asserts/__init__.py
Log Message: ----------- allow assertions on binary inputs
Commit: e37036af04ac34dd7c865f5f11ccaa0ee4e17e9a https://github.com/galaxyproject/galaxy/commit/e37036af04ac34dd7c865f5f11cca... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths: A lib/galaxy/tools/verify/asserts/hdf5.py
Log Message: ----------- add hdf5 assert tests
Commit: db2987b2b21fefad9feb2af0bd4f93b7d490361f https://github.com/galaxyproject/galaxy/commit/db2987b2b21fefad9feb2af0bd4f9... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths: A test/functional/tools/validation_hdf5.xml
Log Message: ----------- add test tool for new assertions
Commit: d4420b75662b7667d430f78be67b09e69037a77b https://github.com/galaxyproject/galaxy/commit/d4420b75662b7667d430f78be67b0... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths: M test/functional/tools/samples_tool_conf.xml
Log Message: ----------- register new test tool
Commit: a00fd508b758fc73aeb537ca98156fff1c7ac14d https://github.com/galaxyproject/galaxy/commit/a00fd508b758fc73aeb537ca98156... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths: M lib/galaxy/tools/xsd/galaxy.xsd
Log Message: ----------- adopt XSD for new syntax
Commit: cb13e56e6bd00a932e9594241fe043f845d4f815 https://github.com/galaxyproject/galaxy/commit/cb13e56e6bd00a932e9594241fe04... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths: A test-data/matrix.cool
Log Message: ----------- add test-data for new hdf5 based tool test
Commit: e9f40f2f95a611f0fab6d81bb225cf409b86f353 https://github.com/galaxyproject/galaxy/commit/e9f40f2f95a611f0fab6d81bb225c... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths: M lib/galaxy/tools/verify/asserts/hdf5.py
Log Message: ----------- fix pep8
Commit: 2a97f726cc86d44610738d04755622e8e4b8342a https://github.com/galaxyproject/galaxy/commit/2a97f726cc86d44610738d0475562... Author: John Chilton jmchilton@gmail.com Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths: M lib/galaxy/tools/verify/asserts/hdf5.py M lib/galaxy/tools/xsd/galaxy.xsd M test/functional/tools/validation_hdf5.xml
Log Message: ----------- Tweaks to hdf5 testing.
- This is in galaxy-lib so h5py import should probably be conditional. - Namespace very generic test functions a bit by adding h5 into the names. - Stricter validation of XSD (the other assertions don't have this but that is problematic on their part), I'm not sure if the docs will render unevenly now though - we may want to revisit that and do this for all the assertions.
Commit: 3d4ff4fc372bc6b44b384af944b548915427fda4 https://github.com/galaxyproject/galaxy/commit/3d4ff4fc372bc6b44b384af944b54... Author: Björn Grüning bjoern@gruenings.eu Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths: M lib/galaxy/tools/verify/asserts/hdf5.py M lib/galaxy/tools/xsd/galaxy.xsd M test/functional/tools/validation_hdf5.xml
Log Message: ----------- Merge pull request #41 from jmchilton/hdf5_tests
Tweaks to hdf5 testing.
Commit: d36cf51f6b63407fd96e49918fe6092d993275a9 https://github.com/galaxyproject/galaxy/commit/d36cf51f6b63407fd96e49918fe60... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2019-02-06 (Wed, 06 Feb 2019)
Changed paths: M lib/galaxy/tools/verify/asserts/hdf5.py M lib/galaxy/tools/xsd/galaxy.xsd M test/functional/tools/validation_hdf5.xml
Log Message: ----------- change "name" to "key"
Commit: 8f7263a1dcce4a2d3e5c251e4253dece2998e61d https://github.com/galaxyproject/galaxy/commit/8f7263a1dcce4a2d3e5c251e4253d... Author: John Chilton jmchilton@gmail.com Date: 2019-02-07 (Thu, 07 Feb 2019)
Changed paths: M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt M lib/galaxy/tools/verify/asserts/__init__.py A lib/galaxy/tools/verify/asserts/hdf5.py M lib/galaxy/tools/xsd/galaxy.xsd A test-data/matrix.cool M test/functional/tools/samples_tool_conf.xml A test/functional/tools/validation_hdf5.xml
Log Message: ----------- Merge pull request #7301 from bgruening/hdf5_tests
Add new test syntax specific for HDF5 files
Compare: https://github.com/galaxyproject/galaxy/compare/e3f1234b2c13...8f7263a1dcce