[galaxy-commits] [galaxyproject/galaxy] 6919da: Merge remote-tracking branch 'galaxyproject/dev' i...

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6919da46d876768902b51639b1784c2df797f543 https://github.com/galaxyproject/galaxy/commit/6919da46d876768902b51639b1784... Author: Jim Johnson <jj@umn.edu> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M .ci/check_py3_compatibility.sh M .ci/flake8_blacklist.txt M .ci/flake8_wrapper.sh M .ci/flake8_wrapper_docstrings.sh M .ci/jenkins/api/run_tests.sh M .ci/jenkins/selenium-compose/run_tests.sh M .ci/jenkins/selenium/run_tests.sh M .gitignore M .travis.yml M CONTRIBUTING.md M Makefile M README.rst M client/.babelrc M client/GruntFile.js M client/README.md M client/bower.json A client/galaxy/docs/bootstrap.md A client/galaxy/docs/galaxy-styles.md M client/galaxy/scripts/apps/analysis.js A client/galaxy/scripts/apps/chart.js M client/galaxy/scripts/apps/extended.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/apps/panels/tool-panel.js M client/galaxy/scripts/components/Citations.vue A client/galaxy/scripts/components/DisplayStructured.vue M client/galaxy/scripts/components/HistoryImport.vue A client/galaxy/scripts/components/HistoryView.vue A client/galaxy/scripts/components/PluginList.vue A client/galaxy/scripts/components/RuleCollectionBuilder.vue A client/galaxy/scripts/components/RulesDisplay.vue A client/galaxy/scripts/components/WorkflowImport.vue M client/galaxy/scripts/components/admin/DataTablesGrid.vue M client/galaxy/scripts/galaxy.js A client/galaxy/scripts/layout/communication-server-view.js R client/galaxy/scripts/layout/generic-nav-view.js M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/legacy/grid/grid-view.js R client/galaxy/scripts/libs/bootstrap-tour.js R client/galaxy/scripts/libs/bootstrap.js A client/galaxy/scripts/mocha/test.js A client/galaxy/scripts/mocha/tests/rules_dsl_spec.yml A client/galaxy/scripts/mocha/tests/rules_tests.js M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/galaxy/scripts/mvc/collection/collection-model.js M 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tools/genomespace/genomespace_importer.xml M tools/genomespace/genomespace_push.xml M tools/stats/filtering.py M tools/stats/filtering.xml M tox.ini Log Message: ----------- Merge remote-tracking branch 'galaxyproject/dev' into dev Commit: c3982fdf4ca9cf12595e02be4f08a074ec52f60c https://github.com/galaxyproject/galaxy/commit/c3982fdf4ca9cf12595e02be4f08a... Author: Jim Johnson <jj@umn.edu> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/registry.py Log Message: ----------- Add blib MS spectral library datatype blib is a SQlite schema for MassSpec spectral library Commit: c5828aa67c02689060cbb500fb32bf0ca0585f8f https://github.com/galaxyproject/galaxy/commit/c5828aa67c02689060cbb500fb32b... Author: Jim Johnson <jj@umn.edu> Date: 2018-05-09 (Wed, 09 May 2018) Changed paths: M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/test/test.blib Log Message: ----------- blib datatype add test file: test.blib include blib version in metadata Commit: 3b027af3df512194929fa6a979b111fccd5b9f6d https://github.com/galaxyproject/galaxy/commit/3b027af3df512194929fa6a979b11... Author: Jim Johnson <jj@umn.edu> Date: 2018-05-09 (Wed, 09 May 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Fix flake8 errors Commit: a4ab17cb0db618b8182a0c48726b1fcce8d17bfe https://github.com/galaxyproject/galaxy/commit/a4ab17cb0db618b8182a0c48726b1... Author: John Chilton <jmchilton@gmail.com> Date: 2018-05-14 (Mon, 14 May 2018) Changed paths: M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- Add blib test case for supplied test data, fix RetentionTimes not always available. Commit: 3ec6753f0db67de8fefc162ece7502fe47286d35 https://github.com/galaxyproject/galaxy/commit/3ec6753f0db67de8fefc162ece750... Author: John Chilton <jmchilton@gmail.com> Date: 2018-05-14 (Mon, 14 May 2018) Changed paths: M lib/galaxy/datatypes/registry.py Log Message: ----------- No need to specify these default entries I don't think. Most new datatypes don't get added here, I'm not really sure what purpose these serve. Commit: ab05ac94755da11a400c2efd12b95b84ec1ecf15 https://github.com/galaxyproject/galaxy/commit/ab05ac94755da11a400c2efd12b95... Author: Dannon <dannon.baker@gmail.com> Date: 2018-05-15 (Tue, 15 May 2018) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/sniff.py A lib/galaxy/datatypes/test/test.blib Log Message: ----------- Merge pull request #6092 from jj-umn/dev Add blib datatype for Mass Spectrometry spectral library Compare: https://github.com/galaxyproject/galaxy/compare/e52802f8fd0e...ab05ac94755d **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.