1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/bdd46627880c/ changeset: bdd46627880c user: dan date: 2013-03-13 20:12:55 summary: Handle Updating Data Managers when installed from Tool Shed. affected #: 1 file
diff -r 188400f16e5f997f16c2a31db99da55c37909d00 -r bdd46627880ce13479c49c065ee118952ba8e2f2 lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py --- a/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py +++ b/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py @@ -1683,6 +1683,9 @@ shed_util.pull_repository( repo, repository_clone_url, latest_ctx_rev ) suc.update_repository( repo, latest_ctx_rev ) tool_shed = suc.clean_tool_shed_url( tool_shed_url ) + # Remove old Data Manager entries + if repository.includes_data_managers: + shed_util.remove_from_data_manager( trans.app, repository ) # Update the repository metadata. metadata_dict, invalid_file_tups = suc.generate_metadata_for_changeset_revision( app=trans.app, repository=repository, @@ -1715,6 +1718,11 @@ shed_tool_conf=shed_tool_conf, tool_panel_dict=tool_panel_dict, new_install=False ) + # Add new Data Manager entries + if 'data_manager' in metadata_dict: + new_data_managers = shed_util.install_data_managers( trans.app, trans.app.config.shed_data_manager_config_file, metadata_dict, + repository.get_shed_config_dict( trans.app ), os.path.join( relative_install_dir, name ), + repository, repository_tools_tups ) # Create tool_dependency records if necessary. if 'tool_dependencies' in metadata_dict: tool_dependencies = shed_util.create_tool_dependency_objects( trans.app, repository, relative_install_dir, set_status=False )
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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