details: http://www.bx.psu.edu/hg/galaxy/rev/9057a05dc7d3 changeset: 3739:9057a05dc7d3 user: jeremy goecks <jeremy.goecks@emory.edu> date: Tue May 04 13:45:57 2010 -0400 description: Update types for cuffcompare output files. diffstat: tools/ngs_rna/cuffcompare_wrapper.xml | 12 ++++++------ 1 files changed, 6 insertions(+), 6 deletions(-) diffs (31 lines): diff -r a3f32c37d423 -r 9057a05dc7d3 tools/ngs_rna/cuffcompare_wrapper.xml --- a/tools/ngs_rna/cuffcompare_wrapper.xml Tue May 04 12:50:48 2010 -0400 +++ b/tools/ngs_rna/cuffcompare_wrapper.xml Tue May 04 13:45:57 2010 -0400 @@ -50,21 +50,21 @@ </inputs> <outputs> - <data format="tmap" name="input1_tmap" label="${tool.name} on ${on_string}: data ${input1.hid} tmap file"/> - <data format="refmap" name="input1_refmap" label="${tool.name} on ${on_string}: data ${input1.hid} refmap file"/> - <data format="tmap" name="input2_tmap" label="${tool.name} on ${on_string}: data ${second_gtf.input2.hid} tmap file"> + <data format="tabular" name="input1_tmap" label="${tool.name} on ${on_string}: data ${input1.hid} tmap file"/> + <data format="tabular" name="input1_refmap" label="${tool.name} on ${on_string}: data ${input1.hid} refmap file"/> + <data format="tabular" name="input2_tmap" label="${tool.name} on ${on_string}: data ${second_gtf.input2.hid} tmap file"> <filter>second_gtf['use_second_gtf'] == "Yes"</filter> </data> - <data format="refmap" name="input2_refmap" label="${tool.name} on ${on_string}: data ${second_gtf.input2.hid} refmap file"> + <data format="tabular" name="input2_refmap" label="${tool.name} on ${on_string}: data ${second_gtf.input2.hid} refmap file"> <filter>second_gtf['use_second_gtf'] == "Yes"</filter> </data> <data format="gtf" name="transcripts_combined" label="${tool.name} on ${on_string}: combined transcripts"> <filter>second_gtf['use_second_gtf'] == "Yes"</filter> </data> - <data format="tracking" name="transcripts_tracking" label="${tool.name} on ${on_string}: transcript tracking"> + <data format="tabular" name="transcripts_tracking" label="${tool.name} on ${on_string}: transcript tracking"> <filter>second_gtf['use_second_gtf'] == "Yes"</filter> </data> - <data format="gtf" name="transcripts_accuracy" label="${tool.name} on ${on_string}: transcript accuracy"/> + <data format="txt" name="transcripts_accuracy" label="${tool.name} on ${on_string}: transcript accuracy"/> </outputs> <tests>