1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/620437dab02a/ Changeset: 620437dab02a User: dannon Date: 2015-02-02 17:04:23+00:00 Summary: Merged in dan/galaxy-central-prs (pull request #643) Add ZebrafishMine Data Source Tool. Affected #: 3 files diff -r 5aca28ab8cfbbc1769f68fcfacf3dfbf9352ccde -r 620437dab02aa2bf8508292bc0df4b2e1066264e config/tool_conf.xml.main --- a/config/tool_conf.xml.main +++ b/config/tool_conf.xml.main @@ -15,6 +15,7 @@ <tool file="data_source/yeastmine.xml" /><tool file="data_source/worm_modencode.xml" /><tool file="data_source/wormbase.xml" /> + <tool file="data_source/zebrafishmine.xml" /><tool file="data_source/eupathdb.xml" /><tool file="genomespace/genomespace_file_browser_prod.xml" /><tool file="genomespace/genomespace_importer.xml" /> diff -r 5aca28ab8cfbbc1769f68fcfacf3dfbf9352ccde -r 620437dab02aa2bf8508292bc0df4b2e1066264e config/tool_conf.xml.sample --- a/config/tool_conf.xml.sample +++ b/config/tool_conf.xml.sample @@ -22,6 +22,7 @@ <tool file="data_source/worm_modencode.xml" /><tool file="data_source/wormbase.xml" /><tool file="data_source/wormbase_test.xml" /> + <tool file="data_source/zebrafishmine.xml" /><tool file="data_source/eupathdb.xml" /><tool file="data_source/hbvar.xml" /><tool file="genomespace/genomespace_file_browser_prod.xml" /> diff -r 5aca28ab8cfbbc1769f68fcfacf3dfbf9352ccde -r 620437dab02aa2bf8508292bc0df4b2e1066264e tools/data_source/zebrafishmine.xml --- /dev/null +++ b/tools/data_source/zebrafishmine.xml @@ -0,0 +1,20 @@ +<?xml version="1.0"?> +<tool name="ZebrafishMine" id="zebrafishmine" tool_type="data_source"> + <description>server</description> + <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> + <inputs action="http://zebrafishmine.org/begin.do" check_values="false" method="get"> + <display>go to ZebrafishMine server $GALAXY_URL</display> + </inputs> + <request_param_translation> + <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" > + <value_translation> + <value galaxy_value="auto" remote_value="txt" /><!-- make txt auto detect --> + </value_translation> + </request_param> + </request_param_translation> + <uihints minwidth="800"/> + <outputs> + <data name="output" format="txt" /> + </outputs> + <options sanitize="False"/> +</tool> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.