Branch: refs/heads/release_18.09 Home: https://github.com/galaxyproject/galaxy Commit: 384a165aab2d579ee4c2dceba61f21c42c8c2dc4 https://github.com/galaxyproject/galaxy/commit/384a165aab2d579ee4c2dceba61f2... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2018-04-19 (Thu, 19 Apr 2018)
Changed paths: M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message: ----------- Allow schema to validate
Commit: 0b95898ccf68b8497dff9f322b44abc5668dfce6 https://github.com/galaxyproject/galaxy/commit/0b95898ccf68b8497dff9f322b44a... Author: E Rasche hxr@hx42.org Date: 2018-05-01 (Tue, 01 May 2018)
Changed paths: M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message: ----------- Document pbkdf2
Commit: 7eb0be96cf3dba5099f28fd001c5f2b87ddacf38 https://github.com/galaxyproject/galaxy/commit/7eb0be96cf3dba5099f28fd001c5f... Author: John Chilton jmchilton@gmail.com Date: 2018-08-08 (Wed, 08 Aug 2018)
Changed paths: M lib/galaxy/config.py
Log Message: ----------- Restore log_destination = stdout configuration option.
Implementation in 17.09 was here https://github.com/galaxyproject/galaxy/blob/release_17.09/lib/galaxy/config.... This option set to stdout is used by the test framework output Galaxy logs to stdout. As far as I can tell log_destination was removed in 18.01 and the effect was to sort of default to stdout - but when we fixed log_destination for files and backported recently https://github.com/galaxyproject/galaxy/commit/bc95f2563601635cfa1daa686b3d5... - test output became written to a file called "stdout". This commit should restore the 17.09 behavior for both files and stdout configuration of this logging.
Commit: 272c6b071d5c5db526cb3da8cc174dd4785a0d6e https://github.com/galaxyproject/galaxy/commit/272c6b071d5c5db526cb3da8cc174... Author: John Chilton jmchilton@gmail.com Date: 2018-08-08 (Wed, 08 Aug 2018)
Changed paths: M test/api/test_workflows.py
Log Message: ----------- Test case to clarify workflow API a bit in simple cases.
Commit: 9874e5db0cbf1967a90d3ad74820af1790602981 https://github.com/galaxyproject/galaxy/commit/9874e5db0cbf1967a90d3ad74820a... Author: John Chilton jmchilton@gmail.com Date: 2018-08-08 (Wed, 08 Aug 2018)
Changed paths: M lib/galaxy/model/__init__.py
Log Message: ----------- Allow uniform access to job state for WorkflowInvocationSteps.
Use the concept of job_source_type and job_source_id used by IDs to summarize the state and list out individual jobs in the response as a shortcut. This information used to be readily accessible before 18.01.
Commit: b878835ea388cc7ea15c0bf9d56738732d44b8e2 https://github.com/galaxyproject/galaxy/commit/b878835ea388cc7ea15c0bf9d5673... Author: John Chilton jmchilton@gmail.com Date: 2018-08-08 (Wed, 08 Aug 2018)
Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/webapps/galaxy/api/workflows.py M test/api/test_workflows.py
Log Message: ----------- Add a legacy_job_state mode to restore 17.09 workflow invocation behavior.
Commit: 3efda23b4fe84f1a61d83aba07186e46c81990ce https://github.com/galaxyproject/galaxy/commit/3efda23b4fe84f1a61d83aba07186... Author: John Chilton jmchilton@gmail.com Date: 2018-09-07 (Fri, 07 Sep 2018)
Changed paths: M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message: ----------- Restore logging block in galaxy config schema.
Commit: 7d7a875af398c440040e78dcc2516aae1c6eb041 https://github.com/galaxyproject/galaxy/commit/7d7a875af398c440040e78dcc2516... Author: Dannon dannon.baker@gmail.com Date: 2018-09-07 (Fri, 07 Sep 2018)
Changed paths: M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message: ----------- Merge pull request #5919 from erasche/fix-config-validate
[18.01] Allow schema to validate
Commit: 2d9b803025828869c50a70db25fb7654caa17368 https://github.com/galaxyproject/galaxy/commit/2d9b803025828869c50a70db25fb7... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-09-26 (Wed, 26 Sep 2018)
Changed paths: M lib/galaxy/security/__init__.py
Log Message: ----------- Use UserRoleAssociation to get private roles
If I understand this correctly this should work even if the user email changes.
Commit: 5a97e4fcea77426eab0a7ca22402cdf8b638f79b https://github.com/galaxyproject/galaxy/commit/5a97e4fcea77426eab0a7ca22402c... Author: John Chilton jmchilton@gmail.com Date: 2018-09-26 (Wed, 26 Sep 2018)
Changed paths: M lib/galaxy/security/__init__.py
Log Message: ----------- Merge pull request #6771 from mvdbeek/fix_private_role_none
[18.05] Use UserRoleAssociation to get private roles
Commit: 71b561512db9819b68f9685d3e43317ba43790b2 https://github.com/galaxyproject/galaxy/commit/71b561512db9819b68f9685d3e433... Author: Dannon dannon.baker@gmail.com Date: 2018-09-26 (Wed, 26 Sep 2018)
Changed paths: M lib/galaxy/config.py M lib/galaxy/model/__init__.py M lib/galaxy/webapps/galaxy/api/workflows.py M test/api/test_workflows.py
Log Message: ----------- Merge pull request #6559 from jmchilton/wf_api_legacy
[18.01] Restore the ability to track jobs for a WF invocation step.
Commit: cf62a1dafd90df9b65f811bed74d1d173542babc https://github.com/galaxyproject/galaxy/commit/cf62a1dafd90df9b65f811bed74d1... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-09-26 (Wed, 26 Sep 2018)
Changed paths: M lib/galaxy/config.py M lib/galaxy/model/__init__.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/config_schema.yml M test/api/test_workflows.py
Log Message: ----------- Merge remote-tracking branch 'upstream/release_18.01' into release_18.05
Commit: c3d4be2e2cb1ccbdfc68ea14ebf3fb71bdec2e97 https://github.com/galaxyproject/galaxy/commit/c3d4be2e2cb1ccbdfc68ea14ebf3f... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-09-26 (Wed, 26 Sep 2018)
Changed paths: M lib/galaxy/security/__init__.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message: ----------- Merge remote-tracking branch 'upstream/release_18.05' into release_18.09
Commit: 04d2d2ef4672d3ee5f24d7dffe68a7f24238a7f0 https://github.com/galaxyproject/galaxy/commit/04d2d2ef4672d3ee5f24d7dffe68a... Author: Dannon dannon.baker@gmail.com Date: 2018-09-26 (Wed, 26 Sep 2018)
Changed paths: M lib/galaxy/security/__init__.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message: ----------- Merge pull request #6772 from dannon/release_18.09
[18.09] Merge forward from 18.01, 18.05
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