Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f88d893562112223553ba069eff2a1f42fe7d69b https://github.com/galaxyproject/galaxy/commit/f88d893562112223553ba069eff2a... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-03-28 (Tue, 28 Mar 2017) Changed paths: M lib/galaxy/managers/tags.py Log Message: ----------- Add HistoryDatasetCollectionAssociation as a possible tagged item in the galaxy tag manager. Should refactor this down the road, feels weird to register everything here in the manager. Commit: 73bfb57abf5ba728e4145731f91d0b222d74f5df https://github.com/galaxyproject/galaxy/commit/73bfb57abf5ba728e4145731f91d0... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-03-28 (Tue, 28 Mar 2017) Changed paths: M lib/galaxy/managers/collections.py Log Message: ----------- Use the correct tag manager instance from the Collections manager. Commit: 5ceca34344b92d6bfa63ad1eb433a1cdea893f4f https://github.com/galaxyproject/galaxy/commit/5ceca34344b92d6bfa63ad1eb433a... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-03-28 (Tue, 28 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M lib/galaxy/managers/collections.py M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js Log Message: ----------- Add basic tag rendering to expanded collection Commit: 821ee5bbcbfdd9a79c52ac60a20a51e20898b573 https://github.com/galaxyproject/galaxy/commit/821ee5bbcbfdd9a79c52ac60a20a5... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-03-28 (Tue, 28 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/collection/collection-view-edit.js M static/maps/mvc/collection/collection-view-edit.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-view-edit.js Log Message: ----------- Simplify tags usage, since this editor's display is static. Commit: 4a45c9097e5c7d19977196d3ade1cd949af5af03 https://github.com/galaxyproject/galaxy/commit/4a45c9097e5c7d19977196d3ade1c... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-03-28 (Tue, 28 Mar 2017) Changed paths: M client/package.json M client/webpack.config.js M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map Log Message: ----------- Add babel loader. Commit: 2a86f8e54c95da45b59fe166d515fc40b06f3c26 https://github.com/galaxyproject/galaxy/commit/2a86f8e54c95da45b59fe166d515f... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-03-28 (Tue, 28 Mar 2017) Changed paths: M lib/galaxy/managers/hdcas.py Log Message: ----------- Add tags to hdca serializer. TODO: Details only. Commit: 225393a30006ca0313585de1a4bd93b3f0d88566 https://github.com/galaxyproject/galaxy/commit/225393a30006ca0313585de1a4bd9... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-03-28 (Tue, 28 Mar 2017) Changed paths: M lib/galaxy/managers/hdcas.py Log Message: ----------- Add nametags to dataset collection serializer Commit: c4fd96092bcabd869f8c4a4427489d0b2c6209a3 https://github.com/galaxyproject/galaxy/commit/c4fd96092bcabd869f8c4a4427489... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-03-30 (Thu, 30 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/tag.js M static/maps/mvc/tag.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tag.js Log Message: ----------- Make TagEditor label optional. Commit: c452af01bd16cf85e7459f767ee77c381e527a9a https://github.com/galaxyproject/galaxy/commit/c452af01bd16cf85e7459f767ee77... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-03-31 (Fri, 31 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/history/hdca-li.js M static/maps/mvc/history/hdca-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/hdca-li.js Log Message: ----------- Render 'nametags' for hdcas Commit: 2f4aa1a763146e980f9c1c929f07ffd4b7bf7ff3 https://github.com/galaxyproject/galaxy/commit/2f4aa1a763146e980f9c1c929f07f... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-03-31 (Fri, 31 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/collection/collection-view-edit.js M static/maps/mvc/collection/collection-view-edit.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-view-edit.js Log Message: ----------- Toggle tags prompt on collection view Commit: 01655895174eb14530d27452789682335b2f7197 https://github.com/galaxyproject/galaxy/commit/01655895174eb14530d2745278968... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-03-31 (Fri, 31 Mar 2017) Changed paths: M client/galaxy/scripts/mvc/collection/collection-view.js M static/maps/mvc/collection/collection-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-view.js Log Message: ----------- Tags editor location/styling fix for collection view. Commit: c9bbaa30f7400f547e8549ae8d0d3bed5ccbf0c5 https://github.com/galaxyproject/galaxy/commit/c9bbaa30f7400f547e8549ae8d0d3... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-04 (Tue, 04 Apr 2017) Changed paths: M .ci/flake8_lint_include_list.txt M CONTRIBUTING.md M client/galaxy/scripts/mvc/collection/base-creator.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/collection/pair-collection-creator.js M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/scripts/mvc/ui/ui-options.js A client/galaxy/scripts/mvc/upload/collection/collection-row.js A client/galaxy/scripts/mvc/upload/collection/collection-view.js M client/galaxy/scripts/mvc/upload/upload-view.js M client/galaxy/style/less/ui/paired-collection-creator.less M client/galaxy/style/less/upload.less M config/datatypes_conf.xml.sample M config/galaxy.ini.sample A config/plugins/interactive_environments/ethercalc/config/allowed_images.yml.sample M config/plugins/interactive_environments/ethercalc/config/ethercalc.ini.sample A config/plugins/visualizations/charts/static/repository/build/biojs_phylocanvas.js A config/plugins/visualizations/charts/static/repository/build/biojs_phylocanvas.js.map R config/plugins/visualizations/charts/static/repository/build/cytoscape_basic.js R config/plugins/visualizations/charts/static/repository/build/cytoscape_basic.js.map A config/plugins/visualizations/charts/static/repository/build/cytoscape_viewer.js A config/plugins/visualizations/charts/static/repository/build/cytoscape_viewer.js.map M config/plugins/visualizations/charts/static/repository/build/registry.js M config/plugins/visualizations/charts/static/repository/build/registry.js.map M config/plugins/visualizations/charts/static/repository/build/registry.tmp.js A 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config/plugins/visualizations/charts/static/repository/visualizations/cytoscape/viewer/config.js A config/plugins/visualizations/charts/static/repository/visualizations/cytoscape/viewer/logo.png A config/plugins/visualizations/charts/static/repository/visualizations/cytoscape/viewer/wrapper.js M display_applications/igv/bigwig.xml M doc/source/admin/framework_dependencies.rst M doc/source/admin/index.rst A doc/source/admin/reports.md M doc/source/admin/useful_scripts.rst A doc/source/api/api.rst A doc/source/api/ts_api.rst M doc/source/api_doc.rst M doc/source/conf.py M doc/source/index.rst R doc/source/lib/galaxy.webapps.galaxy.api.rst R doc/source/lib/galaxy.webapps.tool_shed.api.rst M doc/source/releases/_header.rst M doc/source/ts_api_doc.rst M lib/galaxy/config.py M lib/galaxy/datatypes/interval.py M lib/galaxy/datatypes/util/gff_util.py M lib/galaxy/jobs/__init__.py M lib/galaxy/managers/collections.py M lib/galaxy/managers/collections_util.py M lib/galaxy/managers/datasets.py M lib/galaxy/managers/workflows.py M lib/galaxy/model/__init__.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/actions/__init__.py M lib/galaxy/tools/deps/resolvers/conda.py M lib/galaxy/tools/deps/views.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/web/base/controllers/admin.py M lib/galaxy/webapps/galaxy/api/folder_contents.py M lib/galaxy/webapps/galaxy/api/library_contents.py M lib/galaxy/workflow/modules.py M lib/galaxy/workflow/run.py M lib/galaxy/workflow/scheduling_manager.py M static/maps/mvc/collection/base-creator.js.map M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/maps/mvc/collection/pair-collection-creator.js.map M static/maps/mvc/history/history-contents.js.map M static/maps/mvc/history/history-view-edit.js.map M static/maps/mvc/tool/tools.js.map M static/maps/mvc/ui/ui-options.js.map A static/maps/mvc/upload/collection/collection-row.js.map A static/maps/mvc/upload/collection/collection-view.js.map M static/maps/mvc/upload/upload-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/collection/base-creator.js M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/scripts/mvc/collection/pair-collection-creator.js M static/scripts/mvc/history/history-contents.js M static/scripts/mvc/history/history-view-edit.js M static/scripts/mvc/tool/tools.js M static/scripts/mvc/ui/ui-options.js A static/scripts/mvc/upload/collection/collection-row.js A static/scripts/mvc/upload/collection/collection-view.js M static/scripts/mvc/upload/upload-view.js M static/style/blue/base.css M templates/webapps/galaxy/admin/manage_dependencies.mako M test/api/test_history_contents.py M test/api/test_jobs.py M test/api/test_libraries.py M test/api/test_tools.py M test/api/test_users.py M test/api/test_workflows.py M test/api/test_workflows_from_yaml.py M test/base/api_asserts.py M test/base/data/test_workflow_pause.ga M test/base/driver_util.py M test/base/populators.py M test/functional/tools/create_10.xml A test/functional/tools/create_2.xml A test/functional/tools/identifier_multiple_in_conditional.xml A test/functional/tools/identifier_multiple_in_repeat.xml M test/functional/tools/samples_tool_conf.xml M test/galaxy_selenium/has_driver.py M test/galaxy_selenium/navigates_galaxy.py M test/galaxy_selenium/sizzle.py A test/integration/test_maximum_worklfow_invocation_duration.py A test/integration/test_workflow_handler_configuration.py A test/integration/workflow_handler_configuration_job_conf.xml M test/qunit/test-data/paired-collection-creator.data.js M test/selenium_tests/test_collection_builders.py M test/selenium_tests/test_tool_form.py M test/selenium_tests/test_uploads.py M test/shed_functional/functional/test_1090_repository_dependency_handling.py Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into tags_improvements Commit: 439444e65ad9c79a0a2553a5eb916405b1910e93 https://github.com/galaxyproject/galaxy/commit/439444e65ad9c79a0a2553a5eb916... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-04 (Tue, 04 Apr 2017) Changed paths: M lib/galaxy/managers/collections.py M lib/galaxy/tools/actions/__init__.py Log Message: ----------- Preserve tags for collection outputs. This is one step forward, also need to address non-output handled collectinos, like those automatically created in workflow execution with collection inputs. Commit: bfbca68b4e70cc380398e364dd8abdd5ac1a360e https://github.com/galaxyproject/galaxy/commit/bfbca68b4e70cc380398e364dd8ab... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-04 (Tue, 04 Apr 2017) Changed paths: M lib/galaxy/tools/actions/__init__.py Log Message: ----------- Don't wrap tags up in element_kwds -- this prevents them being sent to non-hda collections. Commit: 6ce47ddbf4ed0046f52cd6c7d4f140c893d9b1e3 https://github.com/galaxyproject/galaxy/commit/6ce47ddbf4ed0046f52cd6c7d4f14... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-04 (Tue, 04 Apr 2017) Changed paths: M lib/galaxy/managers/collections.py Log Message: ----------- Also include implicit_collection_info in collection tag creation logic. Commit: bdcc474d3666fd08f0032629e1882a4441b35244 https://github.com/galaxyproject/galaxy/commit/bdcc474d3666fd08f0032629e1882... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-05 (Wed, 05 Apr 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/form/form-parameters.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/scripts/mvc/ui/ui-table.js A client/galaxy/scripts/mvc/user/user-custom-builds.js M client/galaxy/scripts/mvc/user/user-preferences.js M client/galaxy/style/less/ui.less M lib/galaxy/web/framework/base.py M lib/galaxy/webapps/galaxy/api/histories.py M lib/galaxy/webapps/galaxy/api/users.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/user.py A static/GruntFile.js A static/GruntFile.js.map M static/maps/layout/menu.js.map M static/maps/mvc/form/form-parameters.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/mvc/ui/ui-table.js.map A static/maps/mvc/user/user-custom-builds.js.map M static/maps/mvc/user/user-preferences.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/mvc/form/form-parameters.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/ui/ui-table.js A static/scripts/mvc/user/user-custom-builds.js M static/scripts/mvc/user/user-preferences.js M static/style/blue/base.css R templates/user/dbkeys.mako M tools/filters/trimmer.py M tools/filters/trimmer.xml Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into tags_improvements Commit: 54b7c32bd2913c236c4eacfaf45bdef3ba4c2e7d https://github.com/galaxyproject/galaxy/commit/54b7c32bd2913c236c4eacfaf45bd... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-05 (Wed, 05 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/history/hda-li.js M client/galaxy/scripts/mvc/history/hdca-li.js M lib/galaxy/managers/hdas.py M lib/galaxy/managers/hdcas.py M static/maps/mvc/history/hda-li.js.map M static/maps/mvc/history/hdca-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/hda-li.js M static/scripts/mvc/history/hdca-li.js Log Message: ----------- Render nametags from core tag data instead of a different field. This actually should be somewhat faster, along with being easier to track/update. Commit: 2215869f2d68c1839091dc23cf303bf43fa29078 https://github.com/galaxyproject/galaxy/commit/2215869f2d68c1839091dc23cf303... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-05 (Wed, 05 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/history/hda-li.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/tag.js M static/maps/mvc/history/hda-li.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/tag.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/hda-li.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/tag.js Log Message: ----------- Listen to tag change events, rerender list item for nametags. Commit: 5a513b20bbc371cf9a51483b1cf468d9126a45fe https://github.com/galaxyproject/galaxy/commit/5a513b20bbc371cf9a51483b1cf46... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-05 (Wed, 05 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/tag.js M static/maps/mvc/tag.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tag.js Log Message: ----------- Remove (previously) never-invoked change code which now double-invokes. Parents will handle this. Commit: d41a4efd8822c46aa9f236937d4fc74678ba0dfd https://github.com/galaxyproject/galaxy/commit/d41a4efd8822c46aa9f236937d4fc... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-05 (Wed, 05 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-li.js M static/maps/mvc/dataset/dataset-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/dataset/dataset-li.js Log Message: ----------- For datasets, only rerender title bar if tags have changed (for nametags) Commit: 2ab68fea8b20c256c30afd7e18bcf2647c978396 https://github.com/galaxyproject/galaxy/commit/2ab68fea8b20c256c30afd7e18bcf... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-05 (Wed, 05 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/history/hda-li.js M static/maps/mvc/history/hda-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/hda-li.js Log Message: ----------- Remove redundant listener, handled in parent. Commit: 9e9a2d8312990c11ff7d9df6e71927bdc3210514 https://github.com/galaxyproject/galaxy/commit/9e9a2d8312990c11ff7d9df6e7192... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-05 (Wed, 05 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-li.js M static/maps/mvc/dataset/dataset-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/dataset/dataset-li.js Log Message: ----------- Rerender specifically subtitle iff it's the only changed attribute. Commit: cad62b1f8b5d289dc27ec88303118dadddbbbc52 https://github.com/galaxyproject/galaxy/commit/cad62b1f8b5d289dc27ec88303118... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-06 (Thu, 06 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/ui/ui-select-content.js M client/galaxy/style/less/ui.less M config/tool_destinations.yml.sample M lib/galaxy/jobs/dynamic_tool_destination.py M lib/galaxy/tools/wrappers.py M lib/galaxy/webapps/galaxy/api/histories.py M lib/galaxy/webapps/galaxy/api/users.py M lib/galaxy/webapps/galaxy/buildapp.py R lib/galaxy/webapps/galaxy/controllers/search.py M run_tests.sh M static/maps/mvc/history/history-view-edit.js.map M static/maps/mvc/ui/ui-select-content.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/history-view-edit.js M static/scripts/mvc/ui/ui-select-content.js M static/style/blue/base.css Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into tags_improvements Commit: 1a5d570704da50bdca0ca3194f5549f1338f2c6b https://github.com/galaxyproject/galaxy/commit/1a5d570704da50bdca0ca3194f554... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-04-06 (Thu, 06 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/collection/collection-view-edit.js M static/maps/mvc/collection/collection-view-edit.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Remove comment, rebuild. Commit: 8ea4cf29f812d8ce29b31efa18495aad5d5fca44 https://github.com/galaxyproject/galaxy/commit/8ea4cf29f812d8ce29b31efa18495... Author: Aysam Guerler <aysam.guerler@gmail.com> Date: 2017-04-06 (Thu, 06 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/history/hda-li.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/tag.js M client/package.json M client/webpack.config.js M lib/galaxy/managers/collections.py M lib/galaxy/managers/hdas.py M lib/galaxy/managers/hdcas.py M lib/galaxy/managers/tags.py M lib/galaxy/tools/actions/__init__.py M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/dataset/dataset-li.js.map M static/maps/mvc/history/hda-li.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/tag.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/history/hda-li.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/tag.js Log Message: ----------- Merge pull request #3868 from dannon/tags_improvements Adding tagging to collections. Compare: https://github.com/galaxyproject/galaxy/compare/483f25c5c2c8...8ea4cf29f812