[galaxy-commits] [galaxyproject/galaxy] 33a74c: Fix hotdata method access; this still needs a lot ...

4 Mar 2019


      Branch: refs/heads/dev
  Home:   https://github.com/galaxyproject/galaxy
  Commit: 33a74cae2def618e9fe32d1a8b1355d00a39a525
      https://github.com/galaxyproject/galaxy/commit/33a74cae2def618e9fe32d1a8b135...
  Author: Dannon Baker <dannon.baker@gmail.com>
  Date:   2019-01-22 (Tue, 22 Jan 2019)

  Changed paths:
    M client/galaxy/scripts/components/RuleCollectionBuilder.vue

  Log Message:
  -----------
  Fix hotdata method access; this still needs a lot of love/refactoring, but this makes it work again?


  Commit: a64a5cdc5e1ace5981452026c4aa2857fbfd729b
      https://github.com/galaxyproject/galaxy/commit/a64a5cdc5e1ace5981452026c4aa2...
  Author: Dannon Baker <dannon.baker@gmail.com>
  Date:   2019-01-22 (Tue, 22 Jan 2019)

  Changed paths:
    M client/galaxy/scripts/components/RuleCollectionBuilder.vue

  Log Message:
  -----------
  Prefer const, none of these are reassigned.


  Commit: 3c9f263c69c657f8a644fceb778a7ff36c888d0a
      https://github.com/galaxyproject/galaxy/commit/3c9f263c69c657f8a644fceb778a7...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-01-23 (Wed, 23 Jan 2019)

  Changed paths:
    M client/galaxy/scripts/components/RuleCollectionBuilder.vue
    M client/galaxy/scripts/mvc/rules/rule-definitions.js

  Log Message:
  -----------
  Restored hotData to computed, but removed unnecessary side-effects


  Commit: 205cdd0954ffdf34efc2c364ec1b62079e4a27d8
      https://github.com/galaxyproject/galaxy/commit/205cdd0954ffdf34efc2c364ec1b6...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-01-23 (Wed, 23 Jan 2019)

  Changed paths:
    M client/galaxy/scripts/components/RuleCollectionBuilder.vue

  Log Message:
  -----------
  Removed slice method on non-array property


  Commit: 569ea9ea36e15afcbd174b50ae2de79029c4bc0a
      https://github.com/galaxyproject/galaxy/commit/569ea9ea36e15afcbd174b50ae2de...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-01-23 (Wed, 23 Jan 2019)

  Changed paths:
    M client/galaxy/scripts/components/RuleCollectionBuilder.vue

  Log Message:
  -----------
  Removed commented code in RuleCollectionBuilder


  Commit: f729dab31312d1be5ef2226d533d4ad26fb25130
      https://github.com/galaxyproject/galaxy/commit/f729dab31312d1be5ef2226d533d4...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-01-31 (Thu, 31 Jan 2019)

  Changed paths:
    R client/.babelrc
    M client/galaxy/scripts/bundleEntries.js
    A client/galaxy/scripts/components/Tags/GalaxyTags.test.js
    A client/galaxy/scripts/components/Tags/GalaxyTags.vue
    A client/galaxy/scripts/components/Tags/StandardTags.test.js
    A client/galaxy/scripts/components/Tags/StandardTags.vue
    A client/galaxy/scripts/components/Tags/autocomplete_tagging.scss
    A client/galaxy/scripts/components/Tags/index.js
    A client/galaxy/scripts/components/Tags/inits.js
    A client/galaxy/scripts/components/Tags/model.js
    A client/galaxy/scripts/components/Tags/model.test.js
    A client/galaxy/scripts/components/Tags/tagService.js
    A client/galaxy/scripts/components/Tags/tagService.test.js
    A client/galaxy/scripts/components/Tags/tagStyles.scss
    A client/galaxy/scripts/components/Tags/testData/autocompleteResponse.txt
    M client/galaxy/scripts/entry/analysis/AnalysisRouter.js
    M client/galaxy/scripts/mvc/grid/grid-view.js
    R client/galaxy/scripts/sample.test.js
    A client/galaxy/scripts/store/gridSearchStore.js
    A client/galaxy/scripts/store/index.js
    R client/galaxy/scripts/ui/autocom_tagging.js
    R client/galaxy/scripts/unitTestBundle.js
    M client/galaxy/scripts/utils/mock.js
    A client/galaxy/scripts/utils/mountVueComponent.js
    A client/galaxy/scripts/utils/redirect.js
    M client/galaxy/scripts/viz/trackster.js
    R client/galaxy/style/scss/autocomplete_tagging.scss
    M client/galaxy/style/scss/base.scss
    A client/galaxy/style/scss/mixins.scss
    M client/karma/karma.config.mocha.js
    M client/karma/karma.config.qunit.js
    M client/karma/webpack.config.unittest.js
    M client/package.json
    M client/webpack.config.js
    M client/yarn.lock
    M lib/galaxy/web/framework/helpers/grids.py
    M lib/galaxy/webapps/galaxy/controllers/tag.py
    M lib/galaxy/webapps/reports/framework/grids.py
    M templates/tagging_common.mako
    M templates/webapps/galaxy/workflow/editor.mako
    M test/selenium_tests/test_published_histories_grid.py
    M test/selenium_tests/test_saved_histories.py

  Log Message:
  -----------
  Tagging component


  Commit: f138022a163475e14347e9665facbaa3222efef9
      https://github.com/galaxyproject/galaxy/commit/f138022a163475e14347e9665facb...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-02-01 (Fri, 01 Feb 2019)

  Changed paths:
    M client/karma/karma.config.mocha.js

  Log Message:
  -----------
  Re-enable old mocha tests


  Commit: 2389b4dab241eade87fd60bd7792e3d38189c9aa
      https://github.com/galaxyproject/galaxy/commit/2389b4dab241eade87fd60bd7792e...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-02-01 (Fri, 01 Feb 2019)

  Changed paths:
    M templates/tagging_common.mako

  Log Message:
  -----------
  Removed unused import in tagging_common


  Commit: 787740561f19c90fa6b7032af6a7820eaee75187
      https://github.com/galaxyproject/galaxy/commit/787740561f19c90fa6b7032af6a78...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-02-01 (Fri, 01 Feb 2019)

  Changed paths:
    M .ci/jenkins/selenium-py3/run_tests.sh
    M .ci/jenkins/selenium/run_tests.sh
    M .gitignore
    M client/galaxy/scripts/layout/menu.js
    M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js
    M client/galaxy/scripts/mvc/dataset/dataset-error.js
    M client/galaxy/scripts/mvc/library/library-dataset-view.js
    M client/galaxy/scripts/mvc/library/library-folderrow-view.js
    M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
    M client/galaxy/scripts/mvc/library/library-libraryrow-view.js
    M client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js
    M client/galaxy/scripts/toolshed/groups/group-detail-view.js
    M config/galaxy.yml.sample
    M config/tool_shed.yml.sample
    M cron/add_manual_builds.py
    M doc/source/admin/authentication.md
    M doc/source/admin/cluster.md
    M doc/source/admin/config.rst
    M doc/source/admin/galaxy_options.rst
    R doc/source/lib/galaxy.openid.rst
    M doc/source/lib/galaxy.rst
    M doc/source/lib/galaxy.web.framework.rst
    M lib/galaxy/actions/library.py
    M lib/galaxy/config.py
    M lib/galaxy/datatypes/isa.py
    M lib/galaxy/dependencies/__init__.py
    M lib/galaxy/dependencies/conditional-requirements.txt
    M lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt
    M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
    M lib/galaxy/dependencies/pipfiles/flake8/pinned-requirements.txt
    M lib/galaxy/jobs/dynamic_tool_destination.py
    M lib/galaxy/jobs/runners/drmaa.py
    M lib/galaxy/jobs/runners/pulsar.py
    M lib/galaxy/managers/datasets.py
    M lib/galaxy/managers/jobs.py
    M lib/galaxy/model/__init__.py
    M lib/galaxy/tools/parameters/basic.py
    M lib/galaxy/tools/parameters/meta.py
    M lib/galaxy/tools/verify/__init__.py
    M lib/galaxy/tools/verify/interactor.py
    M lib/galaxy/util/__init__.py
    M lib/galaxy/util/filelock.py
    M lib/galaxy/util/hash_util.py
    M lib/galaxy/webapps/galaxy/api/authenticate.py
    M lib/galaxy/webapps/galaxy/api/libraries.py
    M lib/galaxy/webapps/galaxy/api/library_datasets.py
    M lib/galaxy/webapps/galaxy/api/toolshed.py
    M lib/galaxy/webapps/galaxy/config_schema.yml
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
    M lib/galaxy/workflow/modules.py
    M run_tests.sh
    M templates/user/logout.mako
    M templates/webapps/galaxy/workflow/display.mako
    M test/api/test_histories.py
    M test/api/test_workflows.py
    M test/functional/test_toolbox.py
    M test/unit/test_utils.py
    M tools/filters/sff_extract.py
    M tools/maf/maf_to_bed.py
    M tools/phenotype_association/senatag.py
    M tools/stats/gsummary.py

  Log Message:
  -----------
  Merge branch 'dev' into tagging_component_3


  Commit: 8a6b0a1cd260d2c91b4a4f8f689de5ae8d24e940
      https://github.com/galaxyproject/galaxy/commit/8a6b0a1cd260d2c91b4a4f8f689de...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-02-02 (Sat, 02 Feb 2019)

  Changed paths:
    M client/galaxy/scripts/components/Tags/GalaxyTags.test.js
    M client/galaxy/scripts/components/Tags/GalaxyTags.vue
    M client/galaxy/scripts/components/Tags/StandardTags.test.js
    M client/galaxy/scripts/components/Tags/StandardTags.vue
    M client/galaxy/scripts/utils/mountVueComponent.js

  Log Message:
  -----------
  Added localize filter and fixed optional hooks for GalaxyTags


  Commit: c33cd1665d3bfed2dd75086735a01b55f38d44bd
      https://github.com/galaxyproject/galaxy/commit/c33cd1665d3bfed2dd75086735a01...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-02-06 (Wed, 06 Feb 2019)

  Changed paths:
    M .travis.yml
    M client/galaxy/scripts/mvc/workflow/workflow-terminals.js
    M config/datatypes_conf.xml.sample
    M config/job_conf.xml.sample_advanced
    M doc/Makefile
    M doc/source/admin/apache.md
    M doc/source/admin/config_logging.rst
    M doc/source/admin/nginx.md
    M doc/source/admin/scaling.md
    M lib/galaxy/datatypes/sniff.py
    M lib/galaxy/managers/workflows.py
    M lib/galaxy/tools/imp_exp/__init__.py
    M lib/galaxy/tools/verify/__init__.py
    M lib/galaxy/util/compression_utils.py
    M lib/galaxy/web/proxy/js/package.json
    M lib/galaxy/workflow/modules.py
    M lib/tool_shed/galaxy_install/tools/tool_panel_manager.py
    M lib/tool_shed/util/xml_util.py
    M scripts/check_python.py
    M templates/webapps/tool_shed/common/common.mako
    M test/api/test_workflows.py
    M test/galaxy_selenium/cli.py
    M test/galaxy_selenium/driver_factory.py
    M test/galaxy_selenium/navigates_galaxy.py
    M test/selenium_tests/framework.py
    M test/unit/shed_unit/test_tool_panel_manager.py
    M test/unit/tools/test_toolbox.py
    M test/unit/workflows/test_modules.py
    M test/unit/workflows/workflow_support.py
    M tool-data/intermine_simple_display.loc.sample
    M tox.ini

  Log Message:
  -----------
  Merge branch 'dev' into tagging_component_3


  Commit: c89f6ef5764d26191ae4b30a2faef8c1776e65d9
      https://github.com/galaxyproject/galaxy/commit/c89f6ef5764d26191ae4b30a2faef...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-02-06 (Wed, 06 Feb 2019)

  Changed paths:
    A client/galaxy/scripts/components/Tags/GalaxyTags.usage.txt
    M client/galaxy/scripts/components/Tags/GalaxyTags.vue
    R client/galaxy/scripts/components/Tags/autocomplete_tagging.scss
    M client/galaxy/scripts/components/Tags/tagStyles.scss
    M client/galaxy/scripts/store/index.js
    M client/galaxy/scripts/viz/trackster.js
    A client/galaxy/style/scss/autocomplete_tagging.scss

  Log Message:
  -----------
  Minor refinements of main galaxy tags component


  Commit: 410513e4e3fba93cb5634cc8a6d1d99366f129f8
      https://github.com/galaxyproject/galaxy/commit/410513e4e3fba93cb5634cc8a6d1d...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-02-18 (Mon, 18 Feb 2019)

  Changed paths:
    M client/galaxy/scripts/components/Tags/StandardTags.vue
    M templates/tagging_common.mako

  Log Message:
  -----------
  Disabled editing for community tags display, fixed tag loading in mako, removed redundant component styles


  Commit: d6836c5998d0d63156fd9043cf3a714d8718aa27
      https://github.com/galaxyproject/galaxy/commit/d6836c5998d0d63156fd9043cf3a7...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-02-18 (Mon, 18 Feb 2019)

  Changed paths:
    M client/galaxy/scripts/components/Tags/GalaxyTags.vue
    R client/galaxy/scripts/components/Tags/tagStyles.scss

  Log Message:
  -----------
  Linked single-use styles directly into component


  Commit: 84d5d9dd87db423dd195818af0d82f15c46d943c
      https://github.com/galaxyproject/galaxy/commit/84d5d9dd87db423dd195818af0d82...
  Author: Mason <nerdinacan@gmail.com>
  Date:   2019-02-28 (Thu, 28 Feb 2019)

  Changed paths:
    M .gitignore
    M Makefile
    A client/.node_version
    M client/README.md
    A client/galaxy/scripts/components/login/Index.vue
    M client/galaxy/scripts/components/login/Login.vue
    A client/galaxy/scripts/components/login/Register.vue
    M client/galaxy/scripts/entry/admin/AdminRouter.js
    M client/galaxy/scripts/entry/login/index.js
    M client/galaxy/scripts/entry/panels/tool-panel.js
    M client/galaxy/scripts/layout/communication-server-view.js
    M client/galaxy/scripts/layout/menu.js
    M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
    M client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js
    M client/galaxy/scripts/mvc/tool/tool-form-base.js
    M client/galaxy/scripts/mvc/tool/tools.js
    M client/galaxy/scripts/mvc/upload/collection/collection-view.js
    M client/galaxy/scripts/mvc/upload/composite/composite-row.js
    M client/galaxy/scripts/mvc/upload/composite/composite-view.js
    M client/galaxy/scripts/mvc/upload/upload-button.js
    M client/galaxy/scripts/mvc/user/user-model.js
    M client/galaxy/scripts/mvc/workflow/workflow.js
    M client/galaxy/scripts/onload/initQueue.js
    M client/galaxy/scripts/ui/popupmenu.js
    M client/galaxy/style/scss/base.scss
    M client/galaxy/style/scss/list-item.scss
    M client/galaxy/style/scss/ui.scss
    M client/galaxy/style/scss/upload.scss
    M config/datatypes_conf.xml.sample
    M config/galaxy.yml.sample
    M config/job_conf.xml.sample_advanced
    M config/plugins/visualizations/nvd3/nvd3_bar/package.json
    M config/plugins/visualizations/nvd3/nvd3_bar/src/nvd3.js
    M config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.css
    M config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.js
    M config/plugins/visualizations/nvd3/nvd3_pie/config/nvd3_pie.xml
    M config/reports.yml.sample
    M config/tool_shed.yml.sample
    M doc/Makefile
    R doc/fix_schema_rst.sh
    M doc/parse_gx_xsd.py
    M doc/source/admin/apache.md
    M doc/source/admin/cluster.md
    M doc/source/admin/config.rst
    M doc/source/admin/framework_dependencies.rst
    M doc/source/admin/galaxy_options.rst
    M doc/source/admin/jobs.md
    M doc/source/admin/nginx.md
    M doc/source/admin/production.md
    M doc/source/admin/reports_options.rst
    M doc/source/admin/scaling.md
    M doc/source/api/guidelines.rst
    M doc/source/conf.py
    M doc/source/lib/galaxy.datatypes.rst
    M doc/source/lib/galaxy.jobs.runners.rst
    M doc/source/lib/galaxy.jobs.runners.util.cli.job.rst
    M doc/source/lib/galaxy.managers.rst
    A doc/source/lib/galaxy.metadata.rst
    M doc/source/lib/galaxy.rst
    M doc/source/lib/galaxy.tools.deps.rst
    M doc/source/lib/galaxy.tools.rst
    M doc/source/lib/galaxy.tools.verify.asserts.rst
    M doc/source/lib/galaxy.util.rst
    M doc/source/lib/galaxy.web.stack.rst
    M doc/source/lib/galaxy.webapps.galaxy.api.rst
    M doc/source/project/issues.rst
    M doc/source/releases/16.10.rst
    M doc/source/releases/17.09_announce.rst
    A doc/source/releases/19.01.rst
    M doc/source/releases/19.01_announce.rst
    A doc/source/releases/19.05_announce.rst
    M doc/source/releases/index.rst
    R doc/source/slideshow/architecture/galaxy_architecture.md
    R doc/source/slideshow/architecture/images/backbone-model-view.svg
    R doc/source/slideshow/architecture/images/cluster_support.svg
    R doc/source/slideshow/architecture/images/data_managers.svg
    R doc/source/slideshow/architecture/images/docker-chart.png
    R doc/source/slideshow/architecture/images/family/team.png
    R doc/source/slideshow/architecture/images/galaxy_schema.png
    R doc/source/slideshow/architecture/images/hda.svg
    R doc/source/slideshow/architecture/images/hda_dataset.plantuml.svg
    R doc/source/slideshow/architecture/images/hda_dataset.plantuml.txt
    R doc/source/slideshow/architecture/images/hda_hdca.plantuml.svg
    R doc/source/slideshow/architecture/images/hda_hdca.plantuml.txt
    R doc/source/slideshow/architecture/images/jsload.png
    R doc/source/slideshow/architecture/images/libraries.svg
    R doc/source/slideshow/architecture/images/library_permissions.svg
    R doc/source/slideshow/architecture/images/objectstore.plantuml.svg
    R doc/source/slideshow/architecture/images/objectstore.plantuml.txt
    R doc/source/slideshow/architecture/images/objectstore_diagram.svg
    R doc/source/slideshow/architecture/images/plantuml_options.txt
    R doc/source/slideshow/architecture/images/sequence.json
    R doc/source/slideshow/architecture/images/server_client.plantuml.svg
    R doc/source/slideshow/architecture/images/server_client.plantuml.txt
    R doc/source/slideshow/architecture/images/server_client_old.plantuml.svg
    R doc/source/slideshow/architecture/images/server_client_old.plantuml.txt
    R doc/source/slideshow/architecture/images/sqla_arch_small.png
    R doc/source/slideshow/architecture/images/usegalaxy_webservers.svg
    R doc/source/slideshow/architecture/images/usegalaxyorg.svg
    R doc/source/slideshow/architecture/images/webapp.plantuml.svg
    R doc/source/slideshow/architecture/images/webapp.plantuml.txt
    R doc/source/slideshow/architecture/images/what-is-webpack.svg
    R doc/source/slideshow/architecture/images/workflow_definition.svg
    R doc/source/slideshow/architecture/images/workflow_run.svg
    R doc/source/slideshow/architecture/images/wsgi_app.svg
    R doc/source/slideshow/architecture/images/wsgi_request.svg
    R doc/source/slideshow/architecture/remark-latest.min.js
    R doc/source/slideshow/architecture/style.css
    M lib/galaxy/config.py
    A lib/galaxy/datatypes/anvio.py
    M lib/galaxy/datatypes/binary.py
    M lib/galaxy/datatypes/proteomics.py
    A lib/galaxy/datatypes/test/brukerbaf.d.tar
    A lib/galaxy/datatypes/test/some.wiff.tar
    M lib/galaxy/dependencies/__init__.py
    M lib/galaxy/dependencies/conditional-requirements.txt
    M lib/galaxy/dependencies/pipfiles/default/Pipfile
    M lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt
    M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
    M lib/galaxy/dependencies/pipfiles/flake8/pinned-requirements.txt
    M lib/galaxy/dependencies/pipfiles/update.sh
    M lib/galaxy/exceptions/error_codes.json
    M lib/galaxy/jobs/__init__.py
    M lib/galaxy/jobs/command_factory.py
    M lib/galaxy/jobs/dynamic_tool_destination.py
    M lib/galaxy/jobs/handler.py
    M lib/galaxy/jobs/runners/__init__.py
    M lib/galaxy/jobs/runners/chronos.py
    M lib/galaxy/jobs/runners/cli.py
    M lib/galaxy/jobs/runners/condor.py
    M lib/galaxy/jobs/runners/drmaa.py
    M lib/galaxy/jobs/runners/godocker.py
    M lib/galaxy/jobs/runners/kubernetes.py
    M lib/galaxy/jobs/runners/local.py
    M lib/galaxy/jobs/runners/pbs.py
    M lib/galaxy/jobs/runners/slurm.py
    M lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh
    M lib/galaxy/managers/configuration.py
    M lib/galaxy/managers/users.py
    M lib/galaxy/managers/workflows.py
    M lib/galaxy/model/__init__.py
    M lib/galaxy/model/item_attrs.py
    M lib/galaxy/model/mapping.py
    M lib/galaxy/model/tool_shed_install/__init__.py
    M lib/galaxy/tools/__init__.py
    M lib/galaxy/tools/cache.py
    M lib/galaxy/tools/data_manager/manager.py
    M lib/galaxy/tools/deps/dependencies.py
    M lib/galaxy/tools/deps/views.py
    M lib/galaxy/tools/imp_exp/__init__.py
    M lib/galaxy/tools/imp_exp/export_history.py
    M lib/galaxy/tools/loader_directory.py
    M lib/galaxy/tools/parameters/output_collect.py
    A lib/galaxy/tools/provided_metadata.py
    M lib/galaxy/tools/repositories.py
    M lib/galaxy/tools/toolbox/base.py
    M lib/galaxy/tools/toolbox/filters/__init__.py
    M lib/galaxy/tools/verify/__init__.py
    M lib/galaxy/tools/verify/asserts/__init__.py
    A lib/galaxy/tools/verify/asserts/hdf5.py
    M lib/galaxy/tools/verify/interactor.py
    M lib/galaxy/tools/verify/script.py
    M lib/galaxy/tools/xsd/galaxy.xsd
    M lib/galaxy/util/__init__.py
    A lib/galaxy/util/bytesize.py
    R lib/galaxy/util/handlers.py
    M lib/galaxy/web/base/controller.py
    M lib/galaxy/web/framework/__init__.py
    M lib/galaxy/web/framework/helpers/grids.py
    M lib/galaxy/web/framework/webapp.py
    M lib/galaxy/web/stack/__init__.py
    A lib/galaxy/web/stack/handlers.py
    M lib/galaxy/webapps/config_manage.py
    M lib/galaxy/webapps/galaxy/api/tools.py
    M lib/galaxy/webapps/galaxy/api/users.py
    M lib/galaxy/webapps/galaxy/api/workflows.py
    M lib/galaxy/webapps/galaxy/buildapp.py
    M lib/galaxy/webapps/galaxy/config_schema.yml
    M lib/galaxy/webapps/galaxy/controllers/admin.py
    M lib/galaxy/webapps/galaxy/controllers/authnz.py
    M lib/galaxy/webapps/galaxy/controllers/dataset.py
    M lib/galaxy/webapps/galaxy/controllers/root.py
    A lib/galaxy/webapps/galaxy/controllers/shed_tool_static.py
    M lib/galaxy/webapps/galaxy/controllers/user.py
    M lib/galaxy/webapps/reports/config_schema.yml
    M lib/galaxy/webapps/reports/framework/grids.py
    M lib/galaxy/webapps/tool_shed/config_schema.yml
    M lib/galaxy/webapps/tool_shed/controllers/user.py
    M lib/galaxy/workflow/scheduling_manager.py
    M lib/tool_shed/tools/tool_validator.py
    M lib/tool_shed/util/common_util.py
    M lib/tool_shed/util/readme_util.py
    M lib/tool_shed/util/shed_util_common.py
    M scripts/common_startup.sh
    M templates/display_common.mako
    R templates/user/index.mako
    R templates/user/logout.mako
    R templates/user/register.mako
    M templates/webapps/tool_shed/user/login.mako
    A templates/webapps/tool_shed/user/logout.mako
    A templates/webapps/tool_shed/user/register.mako
    A test-data/groupby_out1.dat
    A test-data/groupby_out2.dat
    A test-data/groupby_out3.tabular
    A test-data/groupby_out4.tabular
    A test-data/matrix.cool
    M test/api/test_histories.py
    M test/api/test_history_contents.py
    M test/api/test_jobs.py
    M test/api/test_tools.py
    M test/api/test_users.py
    M test/base/api.py
    M test/base/integration_util.py
    M test/functional/tools/output_filter.xml
    M test/functional/tools/samples_tool_conf.xml
    A test/functional/tools/validation_hdf5.xml
    M test/galaxy_selenium/navigates_galaxy.py
    M test/galaxy_selenium/navigation.yml
    M test/integration/test_containerized_jobs.py
    M test/integration/test_job_recovery.py
    A test/integration/test_kubernetes_runner.py
    M test/selenium_tests/test_anon_history.py
    M test/selenium_tests/test_registration.py
    M test/shed_functional/base/twilltestcase.py
    M test/unit/jobs/test_command_factory.py
    M test/unit/tools/test_collect_primary_datasets.py
    M test/unit/tools/test_history_imp_exp.py
    M test/unit/tools/test_toolbox_filters.py
    M test/unit/unittest_utils/galaxy_mock.py
    M tools/data_source/upload.py
    M tools/stats/grouping.py
    M tools/stats/grouping.xml

  Log Message:
  -----------
  Merge branch 'dev' into tagging_component_3


  Commit: 4af2bdeaef3d493b7c55f46445aeabff720b1b1e
      https://github.com/galaxyproject/galaxy/commit/4af2bdeaef3d493b7c55f46445aea...
  Author: Dannon Baker <dannon.baker@gmail.com>
  Date:   2019-03-04 (Mon, 04 Mar 2019)

  Changed paths:
    M client/galaxy/scripts/components/Tags/GalaxyTags.test.js
    M client/galaxy/scripts/components/Tags/GalaxyTags.vue
    M client/galaxy/scripts/components/Tags/StandardTags.test.js
    M client/galaxy/scripts/components/Tags/StandardTags.vue
    M client/galaxy/scripts/components/Tags/model.js
    M client/galaxy/scripts/components/Tags/model.test.js
    M client/galaxy/scripts/components/Tags/tagService.js
    M client/galaxy/scripts/components/Tags/tagService.test.js
    M client/galaxy/scripts/mvc/grid/grid-view.js
    M client/galaxy/scripts/store/gridSearchStore.js
    M client/galaxy/scripts/utils/mountVueComponent.js
    M client/galaxy/scripts/utils/redirect.js

  Log Message:
  -----------
  Client format.


  Commit: 8828fec5ee2aa9506a0475f33049255c48d02883
      https://github.com/galaxyproject/galaxy/commit/8828fec5ee2aa9506a0475f330492...
  Author: Dannon Baker <dannon.baker@gmail.com>
  Date:   2019-03-04 (Mon, 04 Mar 2019)

  Changed paths:
    M client/webpack.config.js

  Log Message:
  -----------
  Drop vue resolver alias, use default package entrypoint.


  Commit: 4e2de8facb252214902aac70f60aaefca8309e78
      https://github.com/galaxyproject/galaxy/commit/4e2de8facb252214902aac70f60aa...
  Author: Dannon Baker <dannon.baker@gmail.com>
  Date:   2019-03-04 (Mon, 04 Mar 2019)

  Changed paths:
    M client/galaxy/scripts/bundleEntries.js
    M client/webpack.config.js

  Log Message:
  -----------
  future-proof store alias used in old code


  Commit: 4ec49c1197e42fe2ac71a4d973955c26d3072452
      https://github.com/galaxyproject/galaxy/commit/4ec49c1197e42fe2ac71a4d973955...
  Author: Dannon <dannon.baker@gmail.com>
  Date:   2019-03-04 (Mon, 04 Mar 2019)

  Changed paths:
    R client/.babelrc
    M client/galaxy/scripts/bundleEntries.js
    A client/galaxy/scripts/components/Tags/GalaxyTags.test.js
    A client/galaxy/scripts/components/Tags/GalaxyTags.usage.txt
    A client/galaxy/scripts/components/Tags/GalaxyTags.vue
    A client/galaxy/scripts/components/Tags/StandardTags.test.js
    A client/galaxy/scripts/components/Tags/StandardTags.vue
    A client/galaxy/scripts/components/Tags/index.js
    A client/galaxy/scripts/components/Tags/inits.js
    A client/galaxy/scripts/components/Tags/model.js
    A client/galaxy/scripts/components/Tags/model.test.js
    A client/galaxy/scripts/components/Tags/tagService.js
    A client/galaxy/scripts/components/Tags/tagService.test.js
    A client/galaxy/scripts/components/Tags/testData/autocompleteResponse.txt
    M client/galaxy/scripts/entry/analysis/AnalysisRouter.js
    M client/galaxy/scripts/mvc/grid/grid-view.js
    R client/galaxy/scripts/sample.test.js
    A client/galaxy/scripts/store/gridSearchStore.js
    A client/galaxy/scripts/store/index.js
    R client/galaxy/scripts/ui/autocom_tagging.js
    R client/galaxy/scripts/unitTestBundle.js
    M client/galaxy/scripts/utils/mock.js
    A client/galaxy/scripts/utils/mountVueComponent.js
    A client/galaxy/scripts/utils/redirect.js
    M client/galaxy/style/scss/base.scss
    A client/galaxy/style/scss/mixins.scss
    M client/karma/karma.config.mocha.js
    M client/karma/karma.config.qunit.js
    M client/karma/webpack.config.unittest.js
    M client/package.json
    M client/webpack.config.js
    M client/yarn.lock
    M lib/galaxy/web/framework/helpers/grids.py
    M lib/galaxy/webapps/galaxy/controllers/tag.py
    M lib/galaxy/webapps/reports/framework/grids.py
    M templates/tagging_common.mako
    M templates/webapps/galaxy/workflow/editor.mako
    M test/selenium_tests/test_published_histories_grid.py
    M test/selenium_tests/test_saved_histories.py

  Log Message:
  -----------
  Merge pull request #7270 from Nerdinacan/tagging_component_3

Tagging component


Compare: https://github.com/galaxyproject/galaxy/compare/d3c51d6d29cd...4ec49c1197e4