Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d8711a121ce127cce82ed7010ed9ba1bb6ff1479 https://github.com/galaxyproject/galaxy/commit/d8711a121ce127cce82ed7010ed9b... Author: Eric Enns <eric.enns@phac-aspc.gc.ca> Date: 2016-06-29 (Wed, 29 Jun 2016) Changed paths: A config/tool_destinations.yml.sample A lib/galaxy/jobs/rules/dynamic_tool_destination.py Log Message: ----------- Initial DTD to Galaxy work Commit: c053197beed35f2357c17b887ed60d218b0c7a4c https://github.com/galaxyproject/galaxy/commit/c053197beed35f2357c17b887ed60... Author: Eric Enns <eric.enns@phac-aspc.gc.ca> Date: 2016-07-04 (Mon, 04 Jul 2016) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/rules/dynamic_tool_destination.py A test/unit/jobs/rules/__init__.py A test/unit/jobs/rules/data/dest_fail.yml A test/unit/jobs/rules/data/priority_tool_destination.yml A test/unit/jobs/rules/data/test.empty A test/unit/jobs/rules/data/test.fasta A test/unit/jobs/rules/data/test1.full A test/unit/jobs/rules/data/test3.full A test/unit/jobs/rules/data/test_no_verbose.yml A test/unit/jobs/rules/data/test_num_input_datasets.yml A test/unit/jobs/rules/data/test_users.yml A test/unit/jobs/rules/data/tool_destination.yml A test/unit/jobs/rules/mockGalaxy.py A test/unit/jobs/rules/test_dynamic_tool_destination.py A test/unit/jobs/rules/vfdb/?bact.test A test/unit/jobs/rules/ymltests.py Log Message: ----------- Added in DTD tests Commit: 99161d6074e5cae86eb5788d641511ad6e47c26a https://github.com/galaxyproject/galaxy/commit/99161d6074e5cae86eb5788d64151... Author: Eric Enns <eric.enns@phac-aspc.gc.ca> Date: 2016-07-04 (Mon, 04 Jul 2016) Changed paths: M lib/galaxy/jobs/rules/dynamic_tool_destination.py M test/unit/jobs/rules/mockGalaxy.py M test/unit/jobs/rules/test_dynamic_tool_destination.py M test/unit/jobs/rules/ymltests.py Log Message: ----------- Flake8 fixes Commit: ed48c6c28b72ef63499ff39abcce9171fb684154 https://github.com/galaxyproject/galaxy/commit/ed48c6c28b72ef63499ff39abcce9... Author: John Chilton <jmchilton@gmail.com> Date: 2016-07-20 (Wed, 20 Jul 2016) Changed paths: M lib/galaxy/config.py M lib/galaxy/jobs/rules/dynamic_tool_destination.py Log Message: ----------- Use more traditional Galaxy config handling for DTD. Commit: d87957e1a2030752b5617934b911da0855bae3fe https://github.com/galaxyproject/galaxy/commit/d87957e1a2030752b5617934b911d... Author: John Chilton <jmchilton@gmail.com> Date: 2016-07-20 (Wed, 20 Jul 2016) Changed paths: M config/job_conf.xml.sample_advanced A lib/galaxy/jobs/dynamic_tool_destination.py M lib/galaxy/jobs/mapper.py R lib/galaxy/jobs/rules/dynamic_tool_destination.py M test/unit/jobs/rules/test_dynamic_tool_destination.py Log Message: ----------- Ease configuration and add documentation for using DTD syntax for destinations. Moving rules also means it won't conflict with other peoples custom dynamic destinations and should prevent Galaxy from reloading the Python repeatedly. Commit: 43fccc98879d17cc6c5f1833f12e4ed25cc1329e https://github.com/galaxyproject/galaxy/commit/43fccc98879d17cc6c5f1833f12e4... Author: Eric Enns <eric.enns@phac-aspc.gc.ca> Date: 2016-07-20 (Wed, 20 Jul 2016) Changed paths: A test/unit/jobs/dynamic_tool_destination/__init__.py A test/unit/jobs/dynamic_tool_destination/data/dest_fail.yml A test/unit/jobs/dynamic_tool_destination/data/priority_tool_destination.yml A test/unit/jobs/dynamic_tool_destination/data/test.empty A test/unit/jobs/dynamic_tool_destination/data/test.fasta A test/unit/jobs/dynamic_tool_destination/data/test1.full A test/unit/jobs/dynamic_tool_destination/data/test3.full A test/unit/jobs/dynamic_tool_destination/data/test_no_verbose.yml A test/unit/jobs/dynamic_tool_destination/data/test_num_input_datasets.yml A test/unit/jobs/dynamic_tool_destination/data/test_users.yml A test/unit/jobs/dynamic_tool_destination/data/tool_destination.yml A test/unit/jobs/dynamic_tool_destination/mockGalaxy.py A test/unit/jobs/dynamic_tool_destination/test_dynamic_tool_destination.py A test/unit/jobs/dynamic_tool_destination/ymltests.py R test/unit/jobs/rules/__init__.py R test/unit/jobs/rules/data/dest_fail.yml R test/unit/jobs/rules/data/priority_tool_destination.yml R test/unit/jobs/rules/data/test.empty R test/unit/jobs/rules/data/test.fasta R test/unit/jobs/rules/data/test1.full R test/unit/jobs/rules/data/test3.full R test/unit/jobs/rules/data/test_no_verbose.yml R test/unit/jobs/rules/data/test_num_input_datasets.yml R test/unit/jobs/rules/data/test_users.yml R test/unit/jobs/rules/data/tool_destination.yml R test/unit/jobs/rules/mockGalaxy.py R test/unit/jobs/rules/test_dynamic_tool_destination.py R test/unit/jobs/rules/vfdb/?bact.test R test/unit/jobs/rules/ymltests.py Log Message: ----------- Moved dtd tests into a different folder Commit: 5ae1058272c788efcf35f37f0d927b8eaefa3b73 https://github.com/galaxyproject/galaxy/commit/5ae1058272c788efcf35f37f0d927... Author: Eric Enns <eric.enns@phac-aspc.gc.ca> Date: 2016-07-20 (Wed, 20 Jul 2016) Changed paths: M config/tool_destinations.yml.sample Log Message: ----------- Updated tool_destinations.yml.sample to include a little more information Commit: a4c713bf64851d1a2bbc99fd0102f5c506f6ecfe https://github.com/galaxyproject/galaxy/commit/a4c713bf64851d1a2bbc99fd0102f... Author: Eric Enns <eric.enns@phac-aspc.gc.ca> Date: 2016-07-20 (Wed, 20 Jul 2016) Changed paths: M lib/galaxy/jobs/dynamic_tool_destination.py Log Message: ----------- Fix dict iteration in dtd default_destination parsing/validation Commit: f67d3cbe93e36af9809db6bb3cb3e1af64f8174a https://github.com/galaxyproject/galaxy/commit/f67d3cbe93e36af9809db6bb3cb3e... Author: John Chilton <jmchilton@gmail.com> Date: 2016-07-21 (Thu, 21 Jul 2016) Changed paths: M config/job_conf.xml.sample_advanced A config/tool_destinations.yml.sample M lib/galaxy/config.py M lib/galaxy/dependencies/pinned-requirements.txt A lib/galaxy/jobs/dynamic_tool_destination.py M lib/galaxy/jobs/mapper.py A test/unit/jobs/dynamic_tool_destination/__init__.py A test/unit/jobs/dynamic_tool_destination/data/dest_fail.yml A test/unit/jobs/dynamic_tool_destination/data/priority_tool_destination.yml A test/unit/jobs/dynamic_tool_destination/data/test.empty A test/unit/jobs/dynamic_tool_destination/data/test.fasta A test/unit/jobs/dynamic_tool_destination/data/test1.full A test/unit/jobs/dynamic_tool_destination/data/test3.full A test/unit/jobs/dynamic_tool_destination/data/test_no_verbose.yml A test/unit/jobs/dynamic_tool_destination/data/test_num_input_datasets.yml A test/unit/jobs/dynamic_tool_destination/data/test_users.yml A test/unit/jobs/dynamic_tool_destination/data/tool_destination.yml A test/unit/jobs/dynamic_tool_destination/mockGalaxy.py A test/unit/jobs/dynamic_tool_destination/test_dynamic_tool_destination.py A test/unit/jobs/dynamic_tool_destination/ymltests.py Log Message: ----------- Merge pull request #2579 from phac-nml/add-dtd-to-galaxy Add DTD to Galaxy Compare: https://github.com/galaxyproject/galaxy/compare/47f25f1dc69b...f67d3cbe93e3