[galaxy-commits] commit/galaxy-central: jmchilton: Fix PBS GALAXY_SLOTS configuration for torque environments explicitly defining num slots.

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/b267ce103960/ Changeset: b267ce103960 User: jmchilton Date: 2014-06-17 22:10:58 Summary: Fix PBS GALAXY_SLOTS configuration for torque environments explicitly defining num slots. Affected #: 1 file diff -r 6294a65d863a4875a9e096ca5e81c3f30e8b0bb6 -r b267ce1039608f0c8fbbd42f148a372871668c22 lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh --- a/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh +++ b/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh @@ -6,6 +6,8 @@ GALAXY_SLOTS="$SLURM_NTASKS" elif [ -n "$NSLOTS" ]; then GALAXY_SLOTS="$NSLOTS" +elif [ -n "$PBS_NCPUS" ] then + GALAXY_SLOTS="$PBS_NCPUS" elif [ -f "$PBS_NODEFILE" ]; then GALAXY_SLOTS=`wc -l < $PBS_NODEFILE` elif [ -n "$LSB_DJOB_NUMPROC" ]; then Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.