1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/6866bba8b7e2/ Changeset: 6866bba8b7e2 User: dannon Date: 2014-09-05 21:25:38 Summary: Merged in lance_parsons/galaxy-central-pull-requests/coding_snp_2bit_locfile (pull request #487) Allow specification of complete filename of 2bit files in codingSnps.pl Affected #: 1 file diff -r 92238b01c946c03b93f4b77d0729b24684940c89 -r 6866bba8b7e28e25820ae0ca73c9159b91bd922e tools/evolution/codingSnps.pl --- a/tools/evolution/codingSnps.pl +++ b/tools/evolution/codingSnps.pl @@ -564,6 +564,8 @@ if ($nibDir eq 'Galaxy') { print STDERR "Failed to find sequence directory in locfile $locFile\n"; } - $nibDir .= "/$build.2bit"; #we want full path and filename + # lparsons: allow specification of full filename in loc file for greater felxibility + unless ($nibDir =~ /(.*)\.2bit$/) { $nibDir .= "/$build.2bit"; } + #$nibDir .= "/$build.2bit"; #we want full path and filename } Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.