[galaxy-commits] [galaxyproject/galaxy] aa66d7: Remove unnecessary tool dependency installation st...

30 Oct 2017


      Branch: refs/heads/dev
  Home:   https://github.com/galaxyproject/galaxy
  Commit: aa66d7fdfd363bd34112d5d15d783f7921e487df
      https://github.com/galaxyproject/galaxy/commit/aa66d7fdfd363bd34112d5d15d783...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-17 (Tue, 17 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
    M lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py
    R templates/admin/tool_shed_repository/tool_dependencies_grid.mako

  Log Message:
  -----------
  Remove unnecessary tool dependency installation status grid


  Commit: d616878f85f2b0bb3cbc8fb2cd5ac7f18a114e5c
      https://github.com/galaxyproject/galaxy/commit/d616878f85f2b0bb3cbc8fb2cd5ac...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-17 (Tue, 17 Oct 2017)

  Changed paths:
    M client/galaxy/scripts/admin.toolshed.js
    M client/galaxy/scripts/apps/admin.js
    M client/galaxy/scripts/apps/analysis.js
    M client/galaxy/scripts/apps/login.js
    M client/galaxy/scripts/apps/panels/admin-panel.js
    M client/galaxy/scripts/apps/panels/history-panel.js
    M client/galaxy/scripts/apps/panels/tool-panel.js
    M client/galaxy/scripts/galaxy.interactive_environments.js
    M client/galaxy/scripts/galaxy.js
    M client/galaxy/scripts/galaxy.library.js
    M client/galaxy/scripts/galaxy.pages.js
    M client/galaxy/scripts/i18n.js
    M client/galaxy/scripts/layout/generic-nav-view.js
    M client/galaxy/scripts/layout/masthead.js
    M client/galaxy/scripts/layout/menu.js
    M client/galaxy/scripts/layout/modal.js
    M client/galaxy/scripts/layout/page.js
    M client/galaxy/scripts/layout/panel.js
    M client/galaxy/scripts/layout/router.js
    M client/galaxy/scripts/layout/scratchbook.js
    M client/galaxy/scripts/mvc/annotation.js
    M client/galaxy/scripts/mvc/base-mvc.js
    M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js
    M client/galaxy/scripts/mvc/citation/citation-model.js
    M client/galaxy/scripts/mvc/citation/citation-view.js
    M client/galaxy/scripts/mvc/collection/base-creator.js
    M client/galaxy/scripts/mvc/collection/collection-li-edit.js
    M client/galaxy/scripts/mvc/collection/collection-li.js
    M client/galaxy/scripts/mvc/collection/collection-model.js
    M client/galaxy/scripts/mvc/collection/collection-view-edit.js
    M client/galaxy/scripts/mvc/collection/collection-view.js
    M client/galaxy/scripts/mvc/collection/list-collection-creator.js
    M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js
    M client/galaxy/scripts/mvc/collection/pair-collection-creator.js
    M client/galaxy/scripts/mvc/dataset/data.js
    M client/galaxy/scripts/mvc/dataset/dataset-choice.js
    M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js
    M client/galaxy/scripts/mvc/dataset/dataset-error.js
    M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js
    M client/galaxy/scripts/mvc/dataset/dataset-li.js
    M client/galaxy/scripts/mvc/dataset/dataset-list.js
    M client/galaxy/scripts/mvc/dataset/dataset-model.js
    M client/galaxy/scripts/mvc/dataset/states.js
    M client/galaxy/scripts/mvc/form/form-data.js
    M client/galaxy/scripts/mvc/form/form-input.js
    M client/galaxy/scripts/mvc/form/form-parameters.js
    M client/galaxy/scripts/mvc/form/form-repeat.js
    M client/galaxy/scripts/mvc/form/form-section.js
    M client/galaxy/scripts/mvc/form/form-view.js
    M client/galaxy/scripts/mvc/form/form-wrapper.js
    M client/galaxy/scripts/mvc/grid/grid-model.js
    M client/galaxy/scripts/mvc/grid/grid-shared.js
    M client/galaxy/scripts/mvc/grid/grid-template.js
    M client/galaxy/scripts/mvc/grid/grid-view.js
    M client/galaxy/scripts/mvc/history/copy-dialog.js
    M client/galaxy/scripts/mvc/history/hda-li-edit.js
    M client/galaxy/scripts/mvc/history/hda-li.js
    M client/galaxy/scripts/mvc/history/hda-model.js
    M client/galaxy/scripts/mvc/history/hdca-li-edit.js
    M client/galaxy/scripts/mvc/history/hdca-li.js
    M client/galaxy/scripts/mvc/history/hdca-model.js
    M client/galaxy/scripts/mvc/history/history-content-model.js
    M client/galaxy/scripts/mvc/history/history-contents.js
    M client/galaxy/scripts/mvc/history/history-list.js
    M client/galaxy/scripts/mvc/history/history-model.js
    M client/galaxy/scripts/mvc/history/history-preferences.js
    M client/galaxy/scripts/mvc/history/history-structure-view.js
    M client/galaxy/scripts/mvc/history/history-view-annotated.js
    M client/galaxy/scripts/mvc/history/history-view-edit-current.js
    M client/galaxy/scripts/mvc/history/history-view-edit.js
    M client/galaxy/scripts/mvc/history/history-view.js
    M client/galaxy/scripts/mvc/history/job-dag.js
    M client/galaxy/scripts/mvc/history/multi-panel.js
    M client/galaxy/scripts/mvc/history/options-menu.js
    M client/galaxy/scripts/mvc/job/job-li.js
    M client/galaxy/scripts/mvc/job/job-model.js
    M client/galaxy/scripts/mvc/job/job-params.js
    M client/galaxy/scripts/mvc/lazy/lazy-limited.js
    M client/galaxy/scripts/mvc/library/library-dataset-view.js
    M client/galaxy/scripts/mvc/library/library-folder-view.js
    M client/galaxy/scripts/mvc/library/library-folderlist-view.js
    M client/galaxy/scripts/mvc/library/library-folderrow-view.js
    M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
    M client/galaxy/scripts/mvc/library/library-library-view.js
    M client/galaxy/scripts/mvc/library/library-librarylist-view.js
    M client/galaxy/scripts/mvc/library/library-libraryrow-view.js
    M client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js
    M client/galaxy/scripts/mvc/library/library-model.js
    M client/galaxy/scripts/mvc/list/list-item.js
    M client/galaxy/scripts/mvc/list/list-view.js
    M client/galaxy/scripts/mvc/tag.js
    M client/galaxy/scripts/mvc/tool/tool-form-base.js
    M client/galaxy/scripts/mvc/tool/tool-form-composite.js
    M client/galaxy/scripts/mvc/tool/tool-form.js
    M client/galaxy/scripts/mvc/tool/tool-genomespace.js
    M client/galaxy/scripts/mvc/tool/tools.js
    M client/galaxy/scripts/mvc/toolshed/categories-view.js
    M client/galaxy/scripts/mvc/toolshed/repo-queue-view.js
    M client/galaxy/scripts/mvc/toolshed/repo-status-view.js
    M client/galaxy/scripts/mvc/toolshed/repositories-view.js
    M client/galaxy/scripts/mvc/toolshed/repository-queue-view.js
    M client/galaxy/scripts/mvc/toolshed/repository-view.js
    M client/galaxy/scripts/mvc/toolshed/shed-list-view.js
    M client/galaxy/scripts/mvc/toolshed/toolshed-model.js
    M client/galaxy/scripts/mvc/toolshed/util.js
    M client/galaxy/scripts/mvc/toolshed/workflows-view.js
    M client/galaxy/scripts/mvc/tours.js
    M client/galaxy/scripts/mvc/ui/error-modal.js
    M client/galaxy/scripts/mvc/ui/icon-button.js
    M client/galaxy/scripts/mvc/ui/popup-menu.js
    M client/galaxy/scripts/mvc/ui/ui-buttons.js
    M client/galaxy/scripts/mvc/ui/ui-color-picker.js
    M client/galaxy/scripts/mvc/ui/ui-drilldown.js
    M client/galaxy/scripts/mvc/ui/ui-frames.js
    M client/galaxy/scripts/mvc/ui/ui-list.js
    M client/galaxy/scripts/mvc/ui/ui-misc.js
    M client/galaxy/scripts/mvc/ui/ui-modal.js
    M client/galaxy/scripts/mvc/ui/ui-options.js
    M client/galaxy/scripts/mvc/ui/ui-popover.js
    M client/galaxy/scripts/mvc/ui/ui-portlet.js
    M client/galaxy/scripts/mvc/ui/ui-select-content.js
    M client/galaxy/scripts/mvc/ui/ui-select-default.js
    M client/galaxy/scripts/mvc/ui/ui-select-ftp.js
    M client/galaxy/scripts/mvc/ui/ui-select-genomespace.js
    M client/galaxy/scripts/mvc/ui/ui-select-library.js
    M client/galaxy/scripts/mvc/ui/ui-select.js
    M client/galaxy/scripts/mvc/ui/ui-slider.js
    M client/galaxy/scripts/mvc/ui/ui-table.js
    M client/galaxy/scripts/mvc/ui/ui-tabs.js
    M client/galaxy/scripts/mvc/ui/ui-thumbnails.js
    M client/galaxy/scripts/mvc/upload/collection/collection-row.js
    M client/galaxy/scripts/mvc/upload/collection/collection-view.js
    M client/galaxy/scripts/mvc/upload/composite/composite-row.js
    M client/galaxy/scripts/mvc/upload/composite/composite-view.js
    M client/galaxy/scripts/mvc/upload/default/default-row.js
    M client/galaxy/scripts/mvc/upload/default/default-view.js
    M client/galaxy/scripts/mvc/upload/upload-button.js
    M client/galaxy/scripts/mvc/upload/upload-extension.js
    M client/galaxy/scripts/mvc/upload/upload-ftp.js
    M client/galaxy/scripts/mvc/upload/upload-model.js
    M client/galaxy/scripts/mvc/upload/upload-settings.js
    M client/galaxy/scripts/mvc/upload/upload-view.js
    M client/galaxy/scripts/mvc/user/user-custom-builds.js
    M client/galaxy/scripts/mvc/user/user-model.js
    M client/galaxy/scripts/mvc/user/user-preferences.js
    M client/galaxy/scripts/mvc/user/user-quotameter.js
    M client/galaxy/scripts/mvc/visualization/visualization-model.js
    M client/galaxy/scripts/mvc/webhooks.js
    M client/galaxy/scripts/mvc/workflow/workflow-canvas.js
    M client/galaxy/scripts/mvc/workflow/workflow-connector.js
    M client/galaxy/scripts/mvc/workflow/workflow-forms.js
    M client/galaxy/scripts/mvc/workflow/workflow-icons.js
    M client/galaxy/scripts/mvc/workflow/workflow-manager.js
    M client/galaxy/scripts/mvc/workflow/workflow-model.js
    M client/galaxy/scripts/mvc/workflow/workflow-node.js
    M client/galaxy/scripts/mvc/workflow/workflow-terminals.js
    M client/galaxy/scripts/mvc/workflow/workflow-view-data.js
    M client/galaxy/scripts/mvc/workflow/workflow-view-node.js
    M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js
    M client/galaxy/scripts/mvc/workflow/workflow-view.js
    M client/galaxy/scripts/mvc/workflow/workflow.js
    M client/galaxy/scripts/nls/de/locale.js
    M client/galaxy/scripts/nls/es/locale.js
    M client/galaxy/scripts/nls/fr/locale.js
    M client/galaxy/scripts/nls/ja/locale.js
    M client/galaxy/scripts/nls/locale.js
    M client/galaxy/scripts/nls/zh/locale.js
    M client/galaxy/scripts/onload.js
    M client/galaxy/scripts/polyfills.js
    M client/galaxy/scripts/reports_webapp/run_stats.js
    M client/galaxy/scripts/ui/autocom_tagging.js
    M client/galaxy/scripts/ui/editable-text.js
    M client/galaxy/scripts/ui/fa-icon-button.js
    M client/galaxy/scripts/ui/filter-control.js
    M client/galaxy/scripts/ui/hoverhighlight.js
    M client/galaxy/scripts/ui/loading-indicator.js
    M client/galaxy/scripts/ui/mode-button.js
    M client/galaxy/scripts/ui/pagination.js
    M client/galaxy/scripts/ui/peek-column-selector.js
    M client/galaxy/scripts/ui/popupmenu.js
    M client/galaxy/scripts/ui/scroll-panel.js
    M client/galaxy/scripts/ui/search-input.js
    M client/galaxy/scripts/utils/add-logging.js
    M client/galaxy/scripts/utils/ajax-queue.js
    M client/galaxy/scripts/utils/async-save-text.js
    M client/galaxy/scripts/utils/config.js
    M client/galaxy/scripts/utils/deferred.js
    M client/galaxy/scripts/utils/graph.js
    M client/galaxy/scripts/utils/levenshtein.js
    M client/galaxy/scripts/utils/localization.js
    M client/galaxy/scripts/utils/metrics-logger.js
    M client/galaxy/scripts/utils/natural-sort.js
    M client/galaxy/scripts/utils/query-string-parsing.js
    M client/galaxy/scripts/utils/uploadbox.js
    M client/galaxy/scripts/utils/utils.js
    M client/galaxy/scripts/viz/bbi-data-manager.js
    M client/galaxy/scripts/viz/circster.js
    M client/galaxy/scripts/viz/phyloviz.js
    M client/galaxy/scripts/viz/sweepster.js
    M client/galaxy/scripts/viz/trackster.js
    M client/galaxy/scripts/viz/trackster/filters.js
    M client/galaxy/scripts/viz/trackster/painters.js
    M client/galaxy/scripts/viz/trackster/slotting.js
    M client/galaxy/scripts/viz/trackster/tracks.js
    M client/galaxy/scripts/viz/trackster/util.js
    M client/galaxy/scripts/viz/visualization.js
    M client/galaxy/scripts/viz/viz_views.js
    M client/package.json
    M client/yarn.lock
    M static/maps/admin.toolshed.js.map
    M static/maps/galaxy.interactive_environments.js.map
    M static/maps/galaxy.js.map
    M static/maps/galaxy.library.js.map
    M static/maps/galaxy.pages.js.map
    M static/maps/i18n.js.map
    M static/maps/layout/generic-nav-view.js.map
    M static/maps/layout/masthead.js.map
    M static/maps/layout/menu.js.map
    M static/maps/layout/modal.js.map
    M static/maps/layout/page.js.map
    M static/maps/layout/panel.js.map
    M static/maps/layout/router.js.map
    M static/maps/layout/scratchbook.js.map
    M static/maps/mvc/annotation.js.map
    M static/maps/mvc/base-mvc.js.map
    M static/maps/mvc/base/controlled-fetch-collection.js.map
    M static/maps/mvc/citation/citation-model.js.map
    M static/maps/mvc/citation/citation-view.js.map
    M static/maps/mvc/collection/base-creator.js.map
    M static/maps/mvc/collection/collection-li-edit.js.map
    M static/maps/mvc/collection/collection-li.js.map
    M static/maps/mvc/collection/collection-model.js.map
    M static/maps/mvc/collection/collection-view-edit.js.map
    M static/maps/mvc/collection/collection-view.js.map
    M static/maps/mvc/collection/list-collection-creator.js.map
    M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map
    M static/maps/mvc/collection/pair-collection-creator.js.map
    M static/maps/mvc/dataset/data.js.map
    M static/maps/mvc/dataset/dataset-choice.js.map
    M static/maps/mvc/dataset/dataset-edit-attributes.js.map
    M static/maps/mvc/dataset/dataset-error.js.map
    M static/maps/mvc/dataset/dataset-li-edit.js.map
    M static/maps/mvc/dataset/dataset-li.js.map
    M static/maps/mvc/dataset/dataset-list.js.map
    M static/maps/mvc/dataset/dataset-model.js.map
    M static/maps/mvc/dataset/states.js.map
    M static/maps/mvc/form/form-data.js.map
    M static/maps/mvc/form/form-input.js.map
    M static/maps/mvc/form/form-parameters.js.map
    M static/maps/mvc/form/form-repeat.js.map
    M static/maps/mvc/form/form-section.js.map
    M static/maps/mvc/form/form-view.js.map
    M static/maps/mvc/form/form-wrapper.js.map
    M static/maps/mvc/grid/grid-model.js.map
    M static/maps/mvc/grid/grid-shared.js.map
    M static/maps/mvc/grid/grid-template.js.map
    M static/maps/mvc/grid/grid-view.js.map
    M static/maps/mvc/history/copy-dialog.js.map
    M static/maps/mvc/history/hda-li-edit.js.map
    M static/maps/mvc/history/hda-li.js.map
    M static/maps/mvc/history/hda-model.js.map
    M static/maps/mvc/history/hdca-li-edit.js.map
    M static/maps/mvc/history/hdca-li.js.map
    M static/maps/mvc/history/hdca-model.js.map
    M static/maps/mvc/history/history-content-model.js.map
    M static/maps/mvc/history/history-contents.js.map
    M static/maps/mvc/history/history-list.js.map
    M static/maps/mvc/history/history-model.js.map
    M static/maps/mvc/history/history-preferences.js.map
    M static/maps/mvc/history/history-structure-view.js.map
    M static/maps/mvc/history/history-view-annotated.js.map
    M static/maps/mvc/history/history-view-edit-current.js.map
    M static/maps/mvc/history/history-view-edit.js.map
    M static/maps/mvc/history/history-view.js.map
    M static/maps/mvc/history/job-dag.js.map
    M static/maps/mvc/history/multi-panel.js.map
    M static/maps/mvc/history/options-menu.js.map
    M static/maps/mvc/job/job-li.js.map
    M static/maps/mvc/job/job-model.js.map
    M static/maps/mvc/job/job-params.js.map
    M static/maps/mvc/lazy/lazy-limited.js.map
    M static/maps/mvc/library/library-dataset-view.js.map
    M static/maps/mvc/library/library-folder-view.js.map
    M static/maps/mvc/library/library-folderlist-view.js.map
    M static/maps/mvc/library/library-folderrow-view.js.map
    M static/maps/mvc/library/library-foldertoolbar-view.js.map
    M static/maps/mvc/library/library-library-view.js.map
    M static/maps/mvc/library/library-librarylist-view.js.map
    M static/maps/mvc/library/library-libraryrow-view.js.map
    M static/maps/mvc/library/library-librarytoolbar-view.js.map
    M static/maps/mvc/library/library-model.js.map
    M static/maps/mvc/list/list-item.js.map
    M static/maps/mvc/list/list-view.js.map
    M static/maps/mvc/tag.js.map
    M static/maps/mvc/tool/tool-form-base.js.map
    M static/maps/mvc/tool/tool-form-composite.js.map
    M static/maps/mvc/tool/tool-form.js.map
    M static/maps/mvc/tool/tool-genomespace.js.map
    M static/maps/mvc/tool/tools.js.map
    M static/maps/mvc/toolshed/categories-view.js.map
    M static/maps/mvc/toolshed/repo-queue-view.js.map
    M static/maps/mvc/toolshed/repo-status-view.js.map
    M static/maps/mvc/toolshed/repositories-view.js.map
    M static/maps/mvc/toolshed/repository-queue-view.js.map
    M static/maps/mvc/toolshed/repository-view.js.map
    M static/maps/mvc/toolshed/shed-list-view.js.map
    M static/maps/mvc/toolshed/toolshed-model.js.map
    M static/maps/mvc/toolshed/util.js.map
    M static/maps/mvc/toolshed/workflows-view.js.map
    M static/maps/mvc/tours.js.map
    M static/maps/mvc/ui/error-modal.js.map
    M static/maps/mvc/ui/icon-button.js.map
    M static/maps/mvc/ui/popup-menu.js.map
    M static/maps/mvc/ui/ui-buttons.js.map
    M static/maps/mvc/ui/ui-color-picker.js.map
    M static/maps/mvc/ui/ui-drilldown.js.map
    M static/maps/mvc/ui/ui-frames.js.map
    M static/maps/mvc/ui/ui-list.js.map
    M static/maps/mvc/ui/ui-misc.js.map
    M static/maps/mvc/ui/ui-modal.js.map
    M static/maps/mvc/ui/ui-options.js.map
    M static/maps/mvc/ui/ui-popover.js.map
    M static/maps/mvc/ui/ui-portlet.js.map
    M static/maps/mvc/ui/ui-select-content.js.map
    M static/maps/mvc/ui/ui-select-default.js.map
    M static/maps/mvc/ui/ui-select-ftp.js.map
    M static/maps/mvc/ui/ui-select-genomespace.js.map
    M static/maps/mvc/ui/ui-select-library.js.map
    M static/maps/mvc/ui/ui-select.js.map
    M static/maps/mvc/ui/ui-slider.js.map
    M static/maps/mvc/ui/ui-table.js.map
    M static/maps/mvc/ui/ui-tabs.js.map
    M static/maps/mvc/ui/ui-thumbnails.js.map
    M static/maps/mvc/upload/collection/collection-row.js.map
    M static/maps/mvc/upload/collection/collection-view.js.map
    M static/maps/mvc/upload/composite/composite-row.js.map
    M static/maps/mvc/upload/composite/composite-view.js.map
    M static/maps/mvc/upload/default/default-row.js.map
    M static/maps/mvc/upload/default/default-view.js.map
    M static/maps/mvc/upload/upload-button.js.map
    M static/maps/mvc/upload/upload-extension.js.map
    M static/maps/mvc/upload/upload-ftp.js.map
    M static/maps/mvc/upload/upload-model.js.map
    M static/maps/mvc/upload/upload-settings.js.map
    M static/maps/mvc/upload/upload-view.js.map
    M static/maps/mvc/user/user-custom-builds.js.map
    M static/maps/mvc/user/user-model.js.map
    M static/maps/mvc/user/user-preferences.js.map
    M static/maps/mvc/user/user-quotameter.js.map
    M static/maps/mvc/visualization/visualization-model.js.map
    M static/maps/mvc/webhooks.js.map
    M static/maps/mvc/workflow/workflow-canvas.js.map
    M static/maps/mvc/workflow/workflow-connector.js.map
    M static/maps/mvc/workflow/workflow-forms.js.map
    M static/maps/mvc/workflow/workflow-icons.js.map
    M static/maps/mvc/workflow/workflow-manager.js.map
    M static/maps/mvc/workflow/workflow-model.js.map
    M static/maps/mvc/workflow/workflow-node.js.map
    M static/maps/mvc/workflow/workflow-terminals.js.map
    M static/maps/mvc/workflow/workflow-view-data.js.map
    M static/maps/mvc/workflow/workflow-view-node.js.map
    M static/maps/mvc/workflow/workflow-view-terminals.js.map
    M static/maps/mvc/workflow/workflow-view.js.map
    M static/maps/mvc/workflow/workflow.js.map
    M static/maps/nls/de/locale.js.map
    M static/maps/nls/es/locale.js.map
    M static/maps/nls/fr/locale.js.map
    M static/maps/nls/ja/locale.js.map
    M static/maps/nls/locale.js.map
    M static/maps/nls/zh/locale.js.map
    M static/maps/onload.js.map
    M static/maps/polyfills.js.map
    M static/maps/reports_webapp/run_stats.js.map
    M static/maps/ui/autocom_tagging.js.map
    M static/maps/ui/editable-text.js.map
    M static/maps/ui/fa-icon-button.js.map
    M static/maps/ui/filter-control.js.map
    M static/maps/ui/hoverhighlight.js.map
    M static/maps/ui/loading-indicator.js.map
    M static/maps/ui/mode-button.js.map
    M static/maps/ui/pagination.js.map
    M static/maps/ui/peek-column-selector.js.map
    M static/maps/ui/popupmenu.js.map
    M static/maps/ui/scroll-panel.js.map
    M static/maps/ui/search-input.js.map
    M static/maps/utils/add-logging.js.map
    M static/maps/utils/ajax-queue.js.map
    M static/maps/utils/async-save-text.js.map
    M static/maps/utils/config.js.map
    M static/maps/utils/deferred.js.map
    M static/maps/utils/graph.js.map
    M static/maps/utils/levenshtein.js.map
    M static/maps/utils/localization.js.map
    M static/maps/utils/metrics-logger.js.map
    M static/maps/utils/natural-sort.js.map
    M static/maps/utils/query-string-parsing.js.map
    M static/maps/utils/uploadbox.js.map
    M static/maps/utils/utils.js.map
    M static/maps/viz/bbi-data-manager.js.map
    M static/maps/viz/circster.js.map
    M static/maps/viz/phyloviz.js.map
    M static/maps/viz/sweepster.js.map
    M static/maps/viz/trackster.js.map
    M static/maps/viz/trackster/filters.js.map
    M static/maps/viz/trackster/painters.js.map
    M static/maps/viz/trackster/slotting.js.map
    M static/maps/viz/trackster/tracks.js.map
    M static/maps/viz/trackster/util.js.map
    M static/maps/viz/visualization.js.map
    M static/maps/viz/viz_views.js.map
    M static/scripts/bundled/admin.bundled.js.map
    M static/scripts/bundled/analysis.bundled.js.map
    M static/scripts/bundled/libs.bundled.js.map
    M static/scripts/bundled/login.bundled.js.map
    M test/functional/tools/collection_split_on_column.xml

  Log Message:
  -----------
  Merge branch 'remove_toolshed_grids' into remove_toolshed_dependency_grid


  Commit: c9d87cc2e524307953e0d200854a1b35abe6fe73
      https://github.com/galaxyproject/galaxy/commit/c9d87cc2e524307953e0d200854a1...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-18 (Wed, 18 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
    M lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py
    M static/maps/layout/page.js.map
    M static/maps/mvc/dataset/dataset-li-edit.js.map
    M static/maps/mvc/form/form-parameters.js.map
    M static/maps/mvc/grid/grid-view.js.map
    M static/scripts/layout/page.js
    M static/scripts/mvc/dataset/dataset-li-edit.js
    M static/scripts/mvc/form/form-parameters.js
    M static/scripts/mvc/grid/grid-view.js

  Log Message:
  -----------
  Remove unused variables and imports


  Commit: f0484351dcb7e1256bcf476b656f38f7eb3460bd
      https://github.com/galaxyproject/galaxy/commit/f0484351dcb7e1256bcf476b656f3...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-18 (Wed, 18 Oct 2017)

  Changed paths:
    M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js
    M client/galaxy/scripts/mvc/form/form-parameters.js
    M config/datatypes_conf.xml.sample
    M config/plugins/webhooks/demo/tour_generator/static/script.js
    M doc/source/slideshow/architecture/galaxy_architecture.md
    A lib/galaxy/datatypes/annotation.py
    M lib/galaxy/datatypes/converters/sam_to_bam.py
    M lib/galaxy/jobs/handler.py
    M lib/galaxy_ext/metadata/set_metadata.py
    M static/maps/layout/page.js.map
    M static/maps/mvc/dataset/dataset-li-edit.js.map
    M static/maps/mvc/form/form-parameters.js.map
    M static/maps/mvc/grid/grid-view.js.map
    M static/scripts/bundled/admin.bundled.js.map
    M static/scripts/bundled/analysis.bundled.js
    M static/scripts/bundled/analysis.bundled.js.map
    M static/scripts/bundled/libs.bundled.js.map
    M static/scripts/layout/page.js
    M static/scripts/mvc/dataset/dataset-li-edit.js
    M static/scripts/mvc/form/form-parameters.js
    M static/scripts/mvc/grid/grid-view.js

  Log Message:
  -----------
  Merge branch 'dev' into remove_toolshed_dependency_grid


  Commit: fd098c97043b672bdaeaa2ee3abc352b6d06d343
      https://github.com/galaxyproject/galaxy/commit/fd098c97043b672bdaeaa2ee3abc3...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py

  Log Message:
  -----------
  Remove installation grid from admin toolshed grids


  Commit: 3c22c31bd77f239a1887ccf3aa13f257f0f8ac17
      https://github.com/galaxyproject/galaxy/commit/3c22c31bd77f239a1887ccf3aa13f...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py

  Log Message:
  -----------
  Remove installation grid reference from admin toolshed controller


  Commit: 5b0635b833a9efa4be38bcdfeb8ad22ff5f27786
      https://github.com/galaxyproject/galaxy/commit/5b0635b833a9efa4be38bcdfeb8ad...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py

  Log Message:
  -----------
  Remove uninstall handling from manage repositories endpoint


  Commit: fe1cbca9aaad0079348a73ef9632c51dde93e5ca
      https://github.com/galaxyproject/galaxy/commit/fe1cbca9aaad0079348a73ef9632c...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py

  Log Message:
  -----------
  Rename to install repositories, remove operation switch


  Commit: 0c5c8a95abca26d3c447a3a2b6d9903d2eedbd8d
      https://github.com/galaxyproject/galaxy/commit/0c5c8a95abca26d3c447a3a2b6d99...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M client/galaxy/scripts/mvc/toolshed/repository-queue-view.js
    M client/galaxy/scripts/mvc/toolshed/repository-view.js
    M static/maps/mvc/toolshed/repository-queue-view.js.map
    M static/maps/mvc/toolshed/repository-view.js.map
    M static/scripts/mvc/toolshed/repository-queue-view.js
    M static/scripts/mvc/toolshed/repository-view.js

  Log Message:
  -----------
  Redirect client request urls


  Commit: 5207476dce338ba5860d7bdfb0e6a3f1cddea4c9
      https://github.com/galaxyproject/galaxy/commit/5207476dce338ba5860d7bdfb0e6a...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M templates/admin/tool_shed_repository/initiate_repository_installation.mako

  Log Message:
  -----------
  Request url in mako file


  Commit: 41eaf0a7820235bd1fb12e7920597c40e059b0ca
      https://github.com/galaxyproject/galaxy/commit/41eaf0a7820235bd1fb12e7920597...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M templates/admin/tool_shed_repository/initiate_repository_installation.mako

  Log Message:
  -----------
  Remove unnecessary operation specifier from request


  Commit: 9052c592758e50cdba427cfd96e4fdd03d3c7ccf
      https://github.com/galaxyproject/galaxy/commit/9052c592758e50cdba427cfd96e4f...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
    M templates/admin/tool_shed_repository/initiate_repository_installation.mako

  Log Message:
  -----------
  Remove unused api flag from repository installation controller


  Commit: 21f21113eb7667a03870528e5c07a37ce029e9a4
      https://github.com/galaxyproject/galaxy/commit/21f21113eb7667a03870528e5c07a...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
    R templates/admin/tool_shed_repository/repository_installation_grid.mako

  Log Message:
  -----------
  Fix


  Commit: b218aae1de1bf35606e964e6fb6ecd94b9054910
      https://github.com/galaxyproject/galaxy/commit/b218aae1de1bf35606e964e6fb6ec...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M client/galaxy/scripts/apps/panels/admin-panel.js
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
    M static/scripts/bundled/admin.bundled.js
    M static/scripts/bundled/admin.bundled.js.map
    M static/scripts/bundled/libs.bundled.js.map
    M templates/admin/tool_shed_repository/initiate_repository_installation.mako

  Log Message:
  -----------
  Use installation monitoring view instead of installation monitoring grid


  Commit: 77f6b7bacbdf752c993e7a1a02a830c3418fb149
      https://github.com/galaxyproject/galaxy/commit/77f6b7bacbdf752c993e7a1a02a83...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
    R templates/admin/tool_shed_repository/initiate_repository_installation.mako
    A templates/admin/tool_shed_repository/monitor_repository_installation.mako

  Log Message:
  -----------
  Rename mako to emphasize new role, add message handler


  Commit: f0b5caff5fed1e125e80e07b7f2b43bc4d98f5e7
      https://github.com/galaxyproject/galaxy/commit/f0b5caff5fed1e125e80e07b7f2b4...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
    M templates/admin/tool_shed_repository/monitor_repository_installation.mako

  Log Message:
  -----------
  Fix variable testing


  Commit: 50ecbea171f19587516a6d91da97250b9280c3da
      https://github.com/galaxyproject/galaxy/commit/50ecbea171f19587516a6d91da972...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py

  Log Message:
  -----------
  Escape message


  Commit: b76e0559dd3b3ba464b40acec10088f8d68da568
      https://github.com/galaxyproject/galaxy/commit/b76e0559dd3b3ba464b40acec1008...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
    M lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py

  Log Message:
  -----------
  Fix lint


  Commit: f622a4367981e9b4a60343e77984bfc6f3147baf
      https://github.com/galaxyproject/galaxy/commit/f622a4367981e9b4a60343e77984b...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M test/shed_functional/base/twilltestcase.py

  Log Message:
  -----------
  Revise install repositories route


  Commit: 435044b48b5b02c66df14637dc36bb3545e642df
      https://github.com/galaxyproject/galaxy/commit/435044b48b5b02c66df14637dc36b...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py

  Log Message:
  -----------
  Add message, fix escaping


  Commit: 401870453059aef380952fa2c816fdcda701ebcf
      https://github.com/galaxyproject/galaxy/commit/401870453059aef380952fa2c816f...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
    M templates/admin/tool_shed_repository/monitor_repository_installation.mako

  Log Message:
  -----------
  Fix update query, add message


  Commit: 9ba393400100c2ed6b913c75840439b396817c0c
      https://github.com/galaxyproject/galaxy/commit/9ba393400100c2ed6b913c7584043...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-19 (Thu, 19 Oct 2017)

  Changed paths:
    M templates/admin/tool_shed_repository/monitor_repository_installation.mako

  Log Message:
  -----------
  Fix typo in message


  Commit: 620ef86509932d619c126a754d8758047efcadaa
      https://github.com/galaxyproject/galaxy/commit/620ef86509932d619c126a754d875...
  Author: guerler <aysam.guerler@gmail.com>
  Date:   2017-10-25 (Wed, 25 Oct 2017)

  Changed paths:
    M .ci/flake8_lint_include_list.txt
    M client/galaxy/scripts/apps/admin.js
    M client/galaxy/scripts/apps/panels/admin-panel.js
    M client/galaxy/scripts/galaxy.interactive_environments.js
    M client/galaxy/scripts/layout/menu.js
    M client/galaxy/scripts/mvc/library/library-dataset-view.js
    M client/galaxy/scripts/mvc/library/library-folderlist-view.js
    M client/galaxy/scripts/mvc/library/library-folderrow-view.js
    M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
    M client/galaxy/scripts/mvc/library/library-libraryrow-view.js
    M client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js
    M client/galaxy/scripts/utils/utils.js
    M client/galaxy/style/less/library.less
    M config/datatypes_conf.xml.sample
    M config/galaxy.ini.sample
    M config/plugins/interactive_environments/jupyter/static/js/jupyter.js
    M config/plugins/webhooks/demo/tour_generator/helper/__init__.py
    M cron/add_manual_builds.py
    M cron/build_chrom_db.py
    M cron/parse_builds.py
    M cron/parse_builds_3_sites.py
    A doc/source/releases/17.09.rst
    M doc/source/releases/17.09_announce.rst
    A doc/source/releases/18.01_announce.rst
    M doc/source/releases/index.rst
    M lib/galaxy/auth/providers/ldap_ad.py
    M lib/galaxy/config.py
    M lib/galaxy/containers/docker_model.py
    M lib/galaxy/datatypes/annotation.py
    M lib/galaxy/datatypes/assembly.py
    M lib/galaxy/datatypes/binary.py
    M lib/galaxy/datatypes/constructive_solid_geometry.py
    M lib/galaxy/datatypes/converters/bed_to_gff_converter.py
    M lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py
    M lib/galaxy/datatypes/converters/gff_to_bed_converter.py
    M lib/galaxy/datatypes/converters/interval_to_bed_converter.py
    M lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py
    M lib/galaxy/datatypes/converters/interval_to_coverage.py
    M lib/galaxy/datatypes/converters/interval_to_fli.py
    M lib/galaxy/datatypes/converters/lped_to_fped_converter.py
    M lib/galaxy/datatypes/converters/lped_to_pbed_converter.py
    M lib/galaxy/datatypes/converters/pbed_ldreduced_converter.py
    M lib/galaxy/datatypes/converters/pbed_to_lped_converter.py
    M lib/galaxy/datatypes/data.py
    M lib/galaxy/datatypes/dataproviders/external.py
    M lib/galaxy/datatypes/display_applications/application.py
    M lib/galaxy/datatypes/genetics.py
    M lib/galaxy/datatypes/images.py
    M lib/galaxy/datatypes/interval.py
    M lib/galaxy/datatypes/molecules.py
    M lib/galaxy/datatypes/msa.py
    M lib/galaxy/datatypes/ngsindex.py
    M lib/galaxy/datatypes/plant_tribes.py
    M lib/galaxy/datatypes/proteomics.py
    M lib/galaxy/datatypes/qualityscore.py
    M lib/galaxy/datatypes/sequence.py
    M lib/galaxy/datatypes/sniff.py
    M lib/galaxy/datatypes/tabular.py
    M lib/galaxy/datatypes/text.py
    M lib/galaxy/datatypes/tracks.py
    M lib/galaxy/datatypes/util/generic_util.py
    M lib/galaxy/dependencies/__init__.py
    M lib/galaxy/jobs/__init__.py
    M lib/galaxy/jobs/deferred/__init__.py
    M lib/galaxy/jobs/handler.py
    M lib/galaxy/jobs/output_checker.py
    M lib/galaxy/jobs/runners/__init__.py
    M lib/galaxy/jobs/runners/cli.py
    M lib/galaxy/jobs/runners/condor.py
    M lib/galaxy/jobs/runners/drmaa.py
    M lib/galaxy/jobs/runners/godocker.py
    M lib/galaxy/jobs/runners/kubernetes.py
    M lib/galaxy/jobs/runners/local.py
    M lib/galaxy/jobs/runners/pbs.py
    M lib/galaxy/jobs/runners/slurm.py
    M lib/galaxy/jobs/runners/state_handler_factory.py
    M lib/galaxy/jobs/runners/tasks.py
    M lib/galaxy/jobs/runners/util/cli/job/slurm.py
    M lib/galaxy/jobs/runners/util/cli/job/torque.py
    M lib/galaxy/jobs/transfer_manager.py
    M lib/galaxy/managers/context.py
    M lib/galaxy/managers/folders.py
    M lib/galaxy/managers/libraries.py
    M lib/galaxy/managers/library_datasets.py
    M lib/galaxy/managers/users.py
    M lib/galaxy/model/__init__.py
    M lib/galaxy/model/custom_types.py
    M lib/galaxy/model/mapping.py
    M lib/galaxy/model/metadata.py
    M lib/galaxy/model/migrate/check.py
    M lib/galaxy/model/migrate/versions/0005_cleanup_datasets_fix.py
    M lib/galaxy/model/migrate/versions/0024_page_slug_unique_constraint.py
    M lib/galaxy/model/migrate/versions/0032_stored_workflow_slug_column.py
    M lib/galaxy/model/migrate/versions/0033_published_cols_for_histories_and_workflows.py
    M lib/galaxy/model/migrate/versions/0041_workflow_invocation.py
    M lib/galaxy/model/migrate/versions/0042_workflow_invocation_fix.py
    M lib/galaxy/model/migrate/versions/0056_workflow_outputs.py
    M lib/galaxy/model/migrate/versions/0061_tasks.py
    M lib/galaxy/model/migrate/versions/0076_fix_form_values_data_corruption.py
    M lib/galaxy/model/migrate/versions/0115_longer_user_password_field.py
    M lib/galaxy/model/tool_shed_install/migrate/check.py
    M lib/galaxy/sample_tracking/external_service_types.py
    M lib/galaxy/sample_tracking/request_types.py
    M lib/galaxy/tools/__init__.py
    M lib/galaxy/tools/actions/__init__.py
    M lib/galaxy/tools/actions/metadata.py
    M lib/galaxy/tools/actions/upload_common.py
    M lib/galaxy/tools/deps/resolvers/unlinked_tool_shed_packages.py
    M lib/galaxy/tools/imp_exp/__init__.py
    M lib/galaxy/tools/parameters/__init__.py
    M lib/galaxy/tools/parameters/basic.py
    M lib/galaxy/tools/parameters/dynamic_options.py
    M lib/galaxy/tools/parameters/grouping.py
    M lib/galaxy/tools/parameters/validation.py
    M lib/galaxy/tools/parser/output_actions.py
    M lib/galaxy/tools/parser/xml.py
    M lib/galaxy/tools/toolbox/base.py
    M lib/galaxy/tools/util/maf_utilities.py
    M lib/galaxy/tools/wrappers.py
    M lib/galaxy/util/__init__.py
    M lib/galaxy/util/checkers.py
    M lib/galaxy/util/dictifiable.py
    M lib/galaxy/util/hash_util.py
    M lib/galaxy/util/heartbeat.py
    M lib/galaxy/util/image_util.py
    M lib/galaxy/util/object_wrapper.py
    A lib/galaxy/util/path/__init__.py
    A lib/galaxy/util/path/ntpath.py
    A lib/galaxy/util/path/posixpath.py
    M lib/galaxy/util/sanitize_html.py
    M lib/galaxy/visualization/data_providers/basic.py
    M lib/galaxy/visualization/data_providers/genome.py
    M lib/galaxy/visualization/genomes.py
    M lib/galaxy/visualization/plugins/interactive_environments.py
    M lib/galaxy/visualization/plugins/plugin.py
    M lib/galaxy/web/base/controller.py
    M lib/galaxy/web/framework/decorators.py
    M lib/galaxy/web/framework/helpers/grids.py
    M lib/galaxy/web/framework/middleware/error.py
    M lib/galaxy/web/framework/middleware/sentry.py
    M lib/galaxy/web/framework/webapp.py
    M lib/galaxy/web/stack/__init__.py
    M lib/galaxy/webapps/galaxy/api/authenticate.py
    M lib/galaxy/webapps/galaxy/api/folder_contents.py
    M lib/galaxy/webapps/galaxy/api/forms.py
    M lib/galaxy/webapps/galaxy/api/group_roles.py
    M lib/galaxy/webapps/galaxy/api/group_users.py
    M lib/galaxy/webapps/galaxy/api/groups.py
    M lib/galaxy/webapps/galaxy/api/jobs.py
    M lib/galaxy/webapps/galaxy/api/library_contents.py
    M lib/galaxy/webapps/galaxy/api/library_datasets.py
    M lib/galaxy/webapps/galaxy/api/remote_files.py
    M lib/galaxy/webapps/galaxy/api/request_types.py
    M lib/galaxy/webapps/galaxy/api/requests.py
    M lib/galaxy/webapps/galaxy/api/roles.py
    M lib/galaxy/webapps/galaxy/api/samples.py
    M lib/galaxy/webapps/galaxy/api/tool_data.py
    M lib/galaxy/webapps/galaxy/api/users.py
    M lib/galaxy/webapps/galaxy/api/workflows.py
    M lib/galaxy/webapps/galaxy/buildapp.py
    M lib/galaxy/webapps/galaxy/controllers/dataset.py
    R lib/galaxy/webapps/galaxy/controllers/external_service.py
    R lib/galaxy/webapps/galaxy/controllers/external_services.py
    M lib/galaxy/webapps/galaxy/controllers/library.py
    M lib/galaxy/webapps/galaxy/controllers/library_common.py
    R lib/galaxy/webapps/galaxy/controllers/request_type.py
    R lib/galaxy/webapps/galaxy/controllers/requests.py
    R lib/galaxy/webapps/galaxy/controllers/requests_admin.py
    R lib/galaxy/webapps/galaxy/controllers/requests_common.py
    M lib/galaxy/webapps/galaxy/controllers/root.py
    M lib/galaxy/webapps/galaxy/controllers/tool_runner.py
    M lib/galaxy/webapps/galaxy/controllers/visualization.py
    M lib/galaxy/webapps/reports/buildapp.py
    M lib/galaxy/webapps/reports/controllers/system.py
    M lib/galaxy/webapps/tool_shed/buildapp.py
    M lib/galaxy/webapps/tool_shed/controllers/repository.py
    M lib/galaxy/webapps/tool_shed/model/migrate/check.py
    M lib/galaxy_ext/metadata/set_metadata.py
    M lib/psyco_full.py
    M lib/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py
    M lib/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py
    M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py
    M lib/tool_shed/galaxy_install/tool_dependencies/recipe/tag_handler.py
    M lib/tool_shed/grids/util.py
    M lib/tool_shed/managers/groups.py
    M lib/tool_shed/metadata/metadata_generator.py
    M lib/tool_shed/metadata/repository_metadata_manager.py
    M lib/tool_shed/tools/tool_validator.py
    M lib/tool_shed/util/admin_util.py
    M lib/tool_shed/util/basic_util.py
    M lib/tool_shed/util/shed_util_common.py
    M lib/tool_shed/util/tool_util.py
    M lib/tool_shed/util/workflow_util.py
    M scripts/bootstrap_history.py
    M scripts/build_toolbox.py
    M scripts/check_galaxy.py
    M scripts/cleanup_datasets/cleanup_datasets.py
    M scripts/cleanup_datasets/pgcleanup.py
    M scripts/drmaa_external_runner.py
    M scripts/helper.py
    M scripts/loc_files/create_all_fasta_loc.py
    M scripts/microbes/BeautifulSoup.py
    M scripts/microbes/create_bacteria_loc_file.py
    M scripts/microbes/create_bacteria_table.py
    M scripts/microbes/create_nib_seq_loc_file.py
    M scripts/microbes/get_builds_lengths.py
    M scripts/microbes/harvest_bacteria.py
    M scripts/microbes/ncbi_to_ucsc.py
    M scripts/microbes/util.py
    M scripts/others/incorrect_gops_jobs.py
    M scripts/others/incorrect_gops_join_jobs.py
    M scripts/paster.py
    M scripts/rst2html.py
    M scripts/runtime_stats.py
    M scripts/tool_shed/migrate_tools_to_repositories.py
    M setup.cfg
    M static/maps/galaxy.interactive_environments.js.map
    M static/maps/layout/menu.js.map
    M static/maps/libs/backbone.js.map
    M static/maps/libs/bibtex.js.map
    M static/maps/libs/d3.js.map
    A static/maps/libs/jquery/jquery.complexify.js.map
    M static/maps/libs/jquery/jquery.cookie.js.map
    M static/maps/libs/jquery/jquery.js.map
    M static/maps/libs/jquery/jquery.migrate.js.map
    M static/maps/libs/jquery/jquery.mousewheel.js.map
    M static/maps/libs/raven.js.map
    M static/maps/libs/require.js.map
    M static/maps/libs/underscore.js.map
    M static/maps/mvc/library/library-dataset-view.js.map
    M static/maps/mvc/library/library-folderlist-view.js.map
    M static/maps/mvc/library/library-folderrow-view.js.map
    M static/maps/mvc/library/library-foldertoolbar-view.js.map
    M static/maps/mvc/library/library-libraryrow-view.js.map
    M static/maps/mvc/library/library-librarytoolbar-view.js.map
    M static/maps/utils/utils.js.map
    M static/scripts/bundled/admin.bundled.js
    M static/scripts/bundled/admin.bundled.js.map
    M static/scripts/bundled/libs.bundled.js
    M static/scripts/bundled/libs.bundled.js.map
    M static/scripts/galaxy.interactive_environments.js
    M static/scripts/layout/menu.js
    M static/scripts/mvc/library/library-dataset-view.js
    M static/scripts/mvc/library/library-folderlist-view.js
    M static/scripts/mvc/library/library-folderrow-view.js
    M static/scripts/mvc/library/library-foldertoolbar-view.js
    M static/scripts/mvc/library/library-libraryrow-view.js
    M static/scripts/mvc/library/library-librarytoolbar-view.js
    M static/scripts/utils/utils.js
    M static/style/blue/base.css
    M static/style/blue/library.css
    R templates/admin/external_service/common.mako
    R templates/admin/external_service/create_external_service.mako
    R templates/admin/external_service/edit_external_service.mako
    R templates/admin/external_service/grid.mako
    R templates/admin/external_service/reload_external_service_types.mako
    R templates/admin/external_service/view_external_service.mako
    R templates/admin/request_type/common.mako
    R templates/admin/request_type/create_request_type.mako
    R templates/admin/request_type/edit_request_type.mako
    R templates/admin/request_type/grid.mako
    R templates/admin/request_type/request_type_permissions.mako
    R templates/admin/request_type/view_request_type.mako
    R templates/admin/requests/grid.mako
    R templates/admin/requests/reject.mako
    R templates/admin/requests/rename_datasets.mako
    R templates/admin/requests/sample_datasets_grid.mako
    R templates/admin/requests/view_sample_dataset.mako
    M templates/webapps/galaxy/admin/center.mako
    R templates/webapps/galaxy/requests/common/add_samples.mako
    R templates/webapps/galaxy/requests/common/common.mako
    R templates/webapps/galaxy/requests/common/create_request.mako
    R templates/webapps/galaxy/requests/common/edit_basic_request_info.mako
    R templates/webapps/galaxy/requests/common/edit_samples.mako
    R templates/webapps/galaxy/requests/common/find_samples.mako
    R templates/webapps/galaxy/requests/common/index.mako
    R templates/webapps/galaxy/requests/common/sample_dataset_transfer_status.mako
    R templates/webapps/galaxy/requests/common/sample_datasets.mako
    R templates/webapps/galaxy/requests/common/sample_state.mako
    R templates/webapps/galaxy/requests/common/view_request.mako
    R templates/webapps/galaxy/requests/common/view_request_history.mako
    R templates/webapps/galaxy/requests/common/view_sample.mako
    R templates/webapps/galaxy/requests/common/view_sample_datasets.mako
    R templates/webapps/galaxy/requests/common/view_sample_history.mako
    R templates/webapps/galaxy/requests/find_samples_index.mako
    R templates/webapps/galaxy/requests/grid.mako
    R templates/webapps/galaxy/requests/index.mako
    M test/base/testcase.py
    M test/functional/twilltestcase.py
    M test/shed_functional/base/twilltestcase.py
    M test/unit/managers/test_UserManager.py
    M test/unit/tools/test_tool_deps.py
    M tools/data_source/data_source.py
    M tools/data_source/import.py
    M tools/data_source/microbial_import.py
    M tools/data_source/microbial_import_code.py
    M tools/data_source/upload.py
    M tools/evolution/codingSnps_filter.py
    M tools/extract/extract_genomic_dna.py
    M tools/extract/liftOver_wrapper.py
    M tools/filters/axt_to_lav.py
    M tools/filters/bed_to_gff_converter.py
    M tools/filters/catWrapper.py
    M tools/filters/convert_characters.py
    M tools/filters/gff/extract_GFF_Features.py
    M tools/filters/gff/gff_filter_by_attribute.py
    M tools/filters/gff/gff_filter_by_feature_count.py
    M tools/filters/gff_to_bed_converter.py
    M tools/filters/gtf_to_bedgraph_converter.py
    M tools/filters/join.py
    M tools/filters/lav_to_bed_code.py
    M tools/filters/mergeCols.py
    M tools/filters/sff_extract.py
    M tools/filters/ucsc_gene_bed_to_exon_bed.py
    M tools/filters/ucsc_gene_bed_to_intron_bed.py
    M tools/filters/ucsc_gene_table_to_intervals.py
    M tools/genomespace/genomespace_importer.py
    M tools/maf/maf_by_block_number.py
    M tools/maf/maf_filter.py
    M tools/maf/maf_limit_size.py
    M tools/maf/maf_limit_to_species.py
    M tools/maf/maf_reverse_complement.py
    M tools/maf/maf_stats.py
    M tools/maf/maf_thread_for_species.py
    M tools/maf/maf_to_bed.py
    M tools/maf/vcf_to_maf_customtrack.py
    M tools/metag_tools/blat_wrapper.py
    M tools/metag_tools/shrimp_color_wrapper.py
    M tools/metag_tools/shrimp_wrapper.py
    M tools/next_gen_conversion/solid2fastq.py
    M tools/plotting/bar_chart.py
    M tools/solid_tools/maq_cs_wrapper.py
    M tools/solid_tools/solid_qual_stats.py
    M tools/sr_mapping/bfast_wrapper.py
    M tools/stats/aggregate_scores_in_intervals.py
    M tools/stats/filtering.py
    M tools/stats/grouping.py
    M tools/stats/gsummary.py

  Log Message:
  -----------
  Merge branch 'dev' into remove_toolshed_installation_grid


  Commit: ec82e2bf2fe4df3f0af6ae78a8eb84123aeafe7b
      https://github.com/galaxyproject/galaxy/commit/ec82e2bf2fe4df3f0af6ae78a8eb8...
  Author: Dannon Baker <dannon.baker@gmail.com>
  Date:   2017-10-30 (Mon, 30 Oct 2017)

  Changed paths:
    M client/galaxy/scripts/apps/panels/admin-panel.js
    M static/scripts/bundled/admin.bundled.js.map
    M static/scripts/bundled/libs.bundled.js.map

  Log Message:
  -----------
  Prettier, rebuild for merge.


  Commit: 26a9f8916d64e535a7abbd39394a765e9392a1ea
      https://github.com/galaxyproject/galaxy/commit/26a9f8916d64e535a7abbd39394a7...
  Author: Dannon Baker <dannon.baker@gmail.com>
  Date:   2017-10-30 (Mon, 30 Oct 2017)

  Changed paths:
    M client/galaxy/scripts/apps/panels/admin-panel.js
    M client/galaxy/scripts/mvc/toolshed/repository-queue-view.js
    M client/galaxy/scripts/mvc/toolshed/repository-view.js
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
    M lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py
    M static/maps/mvc/toolshed/repository-queue-view.js.map
    M static/maps/mvc/toolshed/repository-view.js.map
    M static/scripts/bundled/admin.bundled.js
    M static/scripts/bundled/admin.bundled.js.map
    M static/scripts/bundled/libs.bundled.js.map
    M static/scripts/mvc/toolshed/repository-queue-view.js
    M static/scripts/mvc/toolshed/repository-view.js
    R templates/admin/tool_shed_repository/initiate_repository_installation.mako
    A templates/admin/tool_shed_repository/monitor_repository_installation.mako
    R templates/admin/tool_shed_repository/repository_installation_grid.mako
    R templates/admin/tool_shed_repository/tool_dependencies_grid.mako
    M test/shed_functional/base/twilltestcase.py

  Log Message:
  -----------
  Merge branch 'remove_toolshed_installation_grid' into dev
 (post-prettier merge was simple to resolve)


Compare: https://github.com/galaxyproject/galaxy/compare/62637405b591...26a9f8916d64

[galaxy-commits] [galaxyproject/galaxy] aa66d7: Remove unnecessary tool dependency installation st...

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