Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 855ccb12791a649d72598ba2433491bd5d705899 https://github.com/galaxyproject/galaxy/commit/855ccb12791a649d72598ba243349... Author: Helena Rasche <hxr@hx42.org> Date: 2018-11-23 (Fri, 23 Nov 2018) Changed paths: M scripts/grt/export.py M scripts/grt/grt.yml.sample Log Message: ----------- GRT: Rip out all parameters, round file sizes Commit: 480143af57163b416f56566153e55d32b90e195b https://github.com/galaxyproject/galaxy/commit/480143af57163b416f56566153e55... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-12-05 (Wed, 05 Dec 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js Log Message: ----------- Handle extra cruft sent along by facebook login redirects Commit: f8ed3e73253e9ad2b893c14409173f9b504f00cc https://github.com/galaxyproject/galaxy/commit/f8ed3e73253e9ad2b893c14409173... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-12-05 (Wed, 05 Dec 2018) Changed paths: M client/galaxy/scripts/layout/menu.js Log Message: ----------- Client format. Commit: 691fbfe606fba9399f66ffeed916294d3a4e5113 https://github.com/galaxyproject/galaxy/commit/691fbfe606fba9399f66ffeed9162... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2018-12-06 (Thu, 06 Dec 2018) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Fix set_peek method for copied datasets dataset_assoc is the job to ouptut dataset association that references the HDA created by a job. If the HDA is copied the copies need to be updated as well, so here we need to call `set_peek` on dataset, not dataset_assoc.dataset. Broken in f4343d876f13e55e92ca228582b4430dcd01e4aa Thanks for tracking this down @jmchilton! Commit: 0e5c96ef3710612bf1171e7094cf7d5427387ecb https://github.com/galaxyproject/galaxy/commit/0e5c96ef3710612bf1171e7094cf7... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-12-11 (Tue, 11 Dec 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Drop "Galaxy pip" in favor of manylinux1 wheels (which are supported in pip >= 8.1). Commit: b10cfa43ac547eaecbd996cef7201170a0e0da8c https://github.com/galaxyproject/galaxy/commit/b10cfa43ac547eaecbd996cef7201... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-12-11 (Tue, 11 Dec 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Remove unused $GXPIP_VERSION Commit: efe84751a7bf84b2297df7b77b514b8425fe7c70 https://github.com/galaxyproject/galaxy/commit/efe84751a7bf84b2297df7b77b514... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-12-11 (Tue, 11 Dec 2018) Changed paths: M .travis.yml Log Message: ----------- Add workaround for https://github.com/travis-ci/travis-ci/issues/7940 Commit: 6db721915fe0565f0ddfb3dcf863cd4ad5c17a57 https://github.com/galaxyproject/galaxy/commit/6db721915fe0565f0ddfb3dcf863c... Author: Björn Grüning <bjoern@gruenings.eu> Date: 2018-12-12 (Wed, 12 Dec 2018) Changed paths: M scripts/grt/export.py M scripts/grt/grt.yml.sample Log Message: ----------- Merge pull request #7041 from erasche/fix-grt [18.09] GRT: Rip out all parameters, round file sizes Commit: 4df43adae6fb8e5fb7ab3a7d3c029835a88f3f1a https://github.com/galaxyproject/galaxy/commit/4df43adae6fb8e5fb7ab3a7d3c029... Author: Martin Cech <marten@bx.psu.edu> Date: 2018-12-12 (Wed, 12 Dec 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/layout/menu.js Log Message: ----------- Merge pull request #7074 from dannon/fix_for_facebook_auth [18.09] Fix welcome on redirect from facebook auth Commit: 7dd7d8a5e99d0d4bb0ad4c317d8e9d29c749136d https://github.com/galaxyproject/galaxy/commit/7dd7d8a5e99d0d4bb0ad4c317d8e9... Author: Martin Cech <marten@bx.psu.edu> Date: 2018-12-12 (Wed, 12 Dec 2018) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Merge pull request #7078 from mvdbeek/fix_peek_for_running_datasets [18.09] Fix set_peek method for copied datasets Commit: 8f14121518d1298f5a603e8e52ae5c05212e6360 https://github.com/galaxyproject/galaxy/commit/8f14121518d1298f5a603e8e52ae5... Author: Nicola Soranzo <nicola.soranzo@gmail.com> Date: 2018-12-16 (Sun, 16 Dec 2018) Changed paths: M .travis.yml M scripts/common_startup.sh Log Message: ----------- Merge pull request #7094 from nsoranzo/release_16.01_backport_2383 [16.01] Backport #2383 Commit: 87fa60939696fb4ecbf157e124eacd7afe4c9243 https://github.com/galaxyproject/galaxy/commit/87fa60939696fb4ecbf157e124eac... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-12-16 (Sun, 16 Dec 2018) Changed paths: M .travis.yml M scripts/common_startup.sh Log Message: ----------- Merge branch 'release_16.01' into release_16.04 Commit: f3c81816db24d7a0b0f3909919c6ca41664fb50d https://github.com/galaxyproject/galaxy/commit/f3c81816db24d7a0b0f3909919c6c... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-12-16 (Sun, 16 Dec 2018) Changed paths: M .travis.yml Log Message: ----------- Merge branch 'release_16.04' into release_16.07 Commit: a2e70ef67ec9899af50720aac9f3bf16cbc636ac https://github.com/galaxyproject/galaxy/commit/a2e70ef67ec9899af50720aac9f3b... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-12-16 (Sun, 16 Dec 2018) Changed paths: M .travis.yml Log Message: ----------- Merge branch 'release_16.07' into release_16.10 Commit: 1b30a9a1b98e40befb34eb7c5197610d4eea786f https://github.com/galaxyproject/galaxy/commit/1b30a9a1b98e40befb34eb7c51976... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-12-16 (Sun, 16 Dec 2018) Changed paths: M .travis.yml Log Message: ----------- Merge branch 'release_16.10' into release_17.01 Commit: 06cfb7e206357718e530c9afa6723c205b664927 https://github.com/galaxyproject/galaxy/commit/06cfb7e206357718e530c9afa6723... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-12-16 (Sun, 16 Dec 2018) Changed paths: M .travis.yml Log Message: ----------- Merge branch 'release_17.01' into release_17.05 Commit: fdd9a091f86c312c4995a47dc674814609a5519c https://github.com/galaxyproject/galaxy/commit/fdd9a091f86c312c4995a47dc6748... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-12-16 (Sun, 16 Dec 2018) Changed paths: M .travis.yml Log Message: ----------- Merge branch 'release_17.05' into release_17.09 Commit: 6feef2a2801e15a770997a3dd9556ca46d6c2ca5 https://github.com/galaxyproject/galaxy/commit/6feef2a2801e15a770997a3dd9556... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-12-16 (Sun, 16 Dec 2018) Changed paths: M .travis.yml Log Message: ----------- Merge branch 'release_17.09' into release_18.01 Commit: bfc634e41536e53fcf05ba97714c48dc8fbcccf4 https://github.com/galaxyproject/galaxy/commit/bfc634e41536e53fcf05ba97714c4... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-12-16 (Sun, 16 Dec 2018) Changed paths: M .travis.yml Log Message: ----------- Merge branch 'release_18.01' into release_18.05 Commit: 65ca25ed669f4cea983d86460f614666ba3571d1 https://github.com/galaxyproject/galaxy/commit/65ca25ed669f4cea983d86460f614... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-12-16 (Sun, 16 Dec 2018) Log Message: ----------- Merge branch 'release_18.05' into release_18.09 Commit: b22b7e58680fce07ce57440951ec581a74faa463 https://github.com/galaxyproject/galaxy/commit/b22b7e58680fce07ce57440951ec5... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-12-16 (Sun, 16 Dec 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/layout/menu.js M lib/galaxy/jobs/__init__.py M scripts/grt/export.py M scripts/grt/grt.yml.sample Log Message: ----------- Merge branch 'release_18.09' into dev Compare: https://github.com/galaxyproject/galaxy/compare/9dcb002505a1...b22b7e58680f **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.