Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ca66882fcec96ff29c6dc147146f20c6584670a6 https://github.com/galaxyproject/galaxy/commit/ca66882fcec96ff29c6dc147146f2... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A client/galaxy/scripts/mvc/visualization/client/components/model.js A client/galaxy/scripts/mvc/visualization/client/components/screenshot.js A client/galaxy/scripts/mvc/visualization/client/views/description.js A client/galaxy/scripts/mvc/visualization/client/views/editor.js A client/galaxy/scripts/mvc/visualization/client/views/groups.js A client/galaxy/scripts/mvc/visualization/client/views/settings.js A client/galaxy/scripts/mvc/visualization/client/views/viewer.js A client/galaxy/scripts/mvc/visualization/client/views/viewport.js A client/galaxy/scripts/mvc/visualization/visualization-client.js A client/galaxy/scripts/mvc/visualization/visualization-view.js Log Message: ----------- Move charts client to core Commit: daf500f80cfa2bdb36b74acadca6a9eb7a61975c https://github.com/galaxyproject/galaxy/commit/daf500f80cfa2bdb36b74acadca6a... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js Log Message: ----------- Add routes to analysis app Commit: 80ee52b2d12f361f58cc2724372ec88fad3d9a76 https://github.com/galaxyproject/galaxy/commit/80ee52b2d12f361f58cc2724372ec... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js Log Message: ----------- Redirect link in history panel to visualization client Commit: bc5eecf6a8efe0f299b740046a5e5ab77ab95b5b https://github.com/galaxyproject/galaxy/commit/bc5eecf6a8efe0f299b740046a5e5... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/style/less/ui.less Log Message: ----------- Augment thumbnail styles for default icon Commit: c7bf80599e19f2a165a4406b00391e64035ad116 https://github.com/galaxyproject/galaxy/commit/c7bf80599e19f2a165a4406b00391... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M lib/galaxy/visualization/plugins/plugin.py Log Message: ----------- Check for visualization logo to be displayed in thumbnail selector Commit: 26f72481aaa20c0a57d491c6086d573b82dbeeec https://github.com/galaxyproject/galaxy/commit/26f72481aaa20c0a57d491c6086d5... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M lib/galaxy/visualization/plugins/registry.py R static/scripts/packed M static/style/blue/base.css Log Message: ----------- Augment registry response Commit: feab8314b0bf309804e23de61de4a5e550c55a71 https://github.com/galaxyproject/galaxy/commit/feab8314b0bf309804e23de61de4a... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Add routes to build app Commit: 0049d5a760ec19383fa97f2ca72afa6352486d3c https://github.com/galaxyproject/galaxy/commit/0049d5a760ec19383fa97f2ca72af... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/ui/ui-thumbnails.js Log Message: ----------- Augment thumbnail viewer Commit: b16c6027dfdff5208adaeae760062cffa2aaad0a https://github.com/galaxyproject/galaxy/commit/b16c6027dfdff5208adaeae760062... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/charts/config/charts.xml M config/plugins/visualizations/scatterplot/config/scatterplot.xml Log Message: ----------- Augment xmls Commit: 39c0eb37ba73b127e36260279491bc1408943c3c https://github.com/galaxyproject/galaxy/commit/39c0eb37ba73b127e36260279491b... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M lib/galaxy/visualization/plugins/config_parser.py Log Message: ----------- Add regular attribute to config parser Commit: b6db962284d06918a1ff1dc61b73b534712f2821 https://github.com/galaxyproject/galaxy/commit/b6db962284d06918a1ff1dc61b73b... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/visualization-view.js M lib/galaxy/visualization/plugins/plugin.py M lib/galaxy/visualization/plugins/registry.py Log Message: ----------- Revise initial viewer, fix logo display Commit: 1829c4a8bcb0a428593530cf901645f01ef2b056 https://github.com/galaxyproject/galaxy/commit/1829c4a8bcb0a428593530cf90164... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M lib/galaxy/visualization/plugins/plugin.py M lib/galaxy/visualization/plugins/registry.py M lib/galaxy/webapps/galaxy/api/visualizations.py Log Message: ----------- Move dictionary generator from registry to plugin Commit: 33ae04a04fca19f9c251efb2acac36fb521a93a0 https://github.com/galaxyproject/galaxy/commit/33ae04a04fca19f9c251efb2acac3... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M lib/galaxy/visualization/plugins/plugin.py Log Message: ----------- Add static url to response Commit: 80222ba4116476c04a7a4c08c4af76e43374b97a https://github.com/galaxyproject/galaxy/commit/80222ba4116476c04a7a4c08c4af7... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/visualization-client.js M lib/galaxy/visualization/plugins/plugin.py M lib/galaxy/visualization/plugins/registry.py Log Message: ----------- Parse entry point in dictionary Commit: 9b6b757503efd1877e5addc185cdf12c03eacde2 https://github.com/galaxyproject/galaxy/commit/9b6b757503efd1877e5addc185cdf... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js R client/galaxy/scripts/mvc/visualization/client/components/model.js R client/galaxy/scripts/mvc/visualization/client/components/screenshot.js R client/galaxy/scripts/mvc/visualization/client/views/description.js R client/galaxy/scripts/mvc/visualization/client/views/editor.js R client/galaxy/scripts/mvc/visualization/client/views/groups.js R client/galaxy/scripts/mvc/visualization/client/views/settings.js R client/galaxy/scripts/mvc/visualization/client/views/viewer.js R client/galaxy/scripts/mvc/visualization/client/views/viewport.js R client/galaxy/scripts/mvc/visualization/visualization-client.js M client/webpack.config.js M config/plugins/visualizations/charts/config/charts.xml A config/plugins/visualizations/common/templates/chart_entry_point.mako M lib/galaxy/visualization/plugins/config_parser.py M lib/galaxy/visualization/plugins/plugin.py M lib/galaxy/visualization/plugins/registry.py M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Add chart type common mako and bundle to visualization framework Commit: 6ec649c04d4200a38066fb8cca951dda5de22a92 https://github.com/galaxyproject/galaxy/commit/6ec649c04d4200a38066fb8cca951... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A client/galaxy/scripts/apps/chart.js A client/galaxy/scripts/mvc/visualization/chart/chart-client.js A client/galaxy/scripts/mvc/visualization/chart/components/model.js A client/galaxy/scripts/mvc/visualization/chart/components/screenshot.js A client/galaxy/scripts/mvc/visualization/chart/views/description.js A client/galaxy/scripts/mvc/visualization/chart/views/editor.js A client/galaxy/scripts/mvc/visualization/chart/views/groups.js A client/galaxy/scripts/mvc/visualization/chart/views/settings.js A client/galaxy/scripts/mvc/visualization/chart/views/viewer.js A client/galaxy/scripts/mvc/visualization/chart/views/viewport.js Log Message: ----------- Add shared chart client Commit: 48518d84f7d06903e2f2ad22ce24ebb617de82ae https://github.com/galaxyproject/galaxy/commit/48518d84f7d06903e2f2ad22ce24e... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M config/plugins/visualizations/common/templates/chart_entry_point.mako Log Message: ----------- Load dataset for chart visualization plugin Commit: 76fac9181f1a9f85913be6e6daea72da0ced549a https://github.com/galaxyproject/galaxy/commit/76fac9181f1a9f85913be6e6daea7... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/common/templates/chart_entry_point.mako Log Message: ----------- Add name to response dictionary Commit: 9be959396ec4c401e2ee8af83a600a8b7cfac3bf https://github.com/galaxyproject/galaxy/commit/9be959396ec4c401e2ee8af83a600... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/views/description.js M client/galaxy/scripts/mvc/visualization/chart/views/settings.js M client/galaxy/scripts/mvc/visualization/visualization-view.js M client/galaxy/style/less/base.less A client/galaxy/style/less/charts.less M config/plugins/visualizations/common/templates/chart_entry_point.mako A config/plugins/visualizations/nvd3bar/config/nvd3bar.xml M lib/galaxy/visualization/plugins/config_parser.py M lib/galaxy/visualization/plugins/plugin.py M static/style/blue/base.css Log Message: ----------- Move json config to xml Commit: 123e9febb856731df4a0d990349adfbf1288b923 https://github.com/galaxyproject/galaxy/commit/123e9febb856731df4a0d990349ad... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/views/groups.js M config/plugins/visualizations/nvd3bar/config/nvd3bar.xml Log Message: ----------- Fix support for data groups form in client Commit: 1c30571677865173452478dfb429792e580051f3 https://github.com/galaxyproject/galaxy/commit/1c30571677865173452478dfb4297... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M config/plugins/visualizations/nvd3bar/config/nvd3bar.xml M lib/galaxy/visualization/plugins/config_parser.py Log Message: ----------- Add conditional parameters to visualizations xml config Commit: fd9ac30d890a179e7184ceb62d9d8d0c333f8ad5 https://github.com/galaxyproject/galaxy/commit/fd9ac30d890a179e7184ceb62d9d8... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3bar/config/nvd3bar.xml M lib/galaxy/visualization/plugins/config_parser.py M lib/galaxy/visualization/plugins/plugin.py Log Message: ----------- Add optional specifiers Commit: 664bf8bba5a4954926fba840aea43a06019ef163 https://github.com/galaxyproject/galaxy/commit/664bf8bba5a4954926fba840aea43... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/components/model.js M client/galaxy/scripts/mvc/visualization/chart/components/screenshot.js M client/galaxy/scripts/mvc/visualization/chart/views/description.js Log Message: ----------- More client side cleanup, revise import styles Commit: 1eccb2a6434fc6e098626066b739f2fa7c5f56a4 https://github.com/galaxyproject/galaxy/commit/1eccb2a6434fc6e098626066b739f... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/views/description.js M client/galaxy/scripts/mvc/visualization/chart/views/editor.js M client/galaxy/scripts/mvc/visualization/chart/views/groups.js M client/galaxy/scripts/mvc/visualization/chart/views/settings.js M client/galaxy/scripts/mvc/visualization/chart/views/viewer.js M client/galaxy/scripts/mvc/visualization/chart/views/viewport.js Log Message: ----------- Use plugin object instead of chart definition Use plugin instead of definition Commit: 911b667f383b801ac22f8fb87bae81bd52051b19 https://github.com/galaxyproject/galaxy/commit/911b667f383b801ac22f8fb87bae8... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/views/settings.js M config/plugins/visualizations/nvd3bar/config/nvd3bar.xml M lib/galaxy/visualization/plugins/config_parser.py Log Message: ----------- Fix conditional parameter description in xml Commit: 4bcc9e6c2e79110bfde3c472debe427ca3097f21 https://github.com/galaxyproject/galaxy/commit/4bcc9e6c2e79110bfde3c472debe4... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js Log Message: ----------- Remove unused split function Commit: d1798f376d2633d6d25955b238b38a7de1fb4d5e https://github.com/galaxyproject/galaxy/commit/d1798f376d2633d6d25955b238b38... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: R config/plugins/visualizations/charts/config/charts.xml R config/plugins/visualizations/charts/package.json R config/plugins/visualizations/charts/static/client/app.css R config/plugins/visualizations/charts/static/client/app.js R config/plugins/visualizations/charts/static/client/components/model.js R config/plugins/visualizations/charts/static/client/components/screenshot.js R config/plugins/visualizations/charts/static/client/views/description.js R config/plugins/visualizations/charts/static/client/views/editor.js R config/plugins/visualizations/charts/static/client/views/groups.js R config/plugins/visualizations/charts/static/client/views/settings.js R config/plugins/visualizations/charts/static/client/views/viewer.js R config/plugins/visualizations/charts/static/client/views/viewport.js R config/plugins/visualizations/charts/static/repository/build/benfred_venn.js R config/plugins/visualizations/charts/static/repository/build/benfred_venn.js.map R config/plugins/visualizations/charts/static/repository/build/biojs_drawrnajs.js R config/plugins/visualizations/charts/static/repository/build/biojs_drawrnajs.js.map R config/plugins/visualizations/charts/static/repository/build/biojs_msa.js R config/plugins/visualizations/charts/static/repository/build/biojs_msa.js.map R config/plugins/visualizations/charts/static/repository/build/biojs_phylocanvas.js R config/plugins/visualizations/charts/static/repository/build/biojs_phylocanvas.js.map R config/plugins/visualizations/charts/static/repository/build/cytoscape_viewer.js R config/plugins/visualizations/charts/static/repository/build/cytoscape_viewer.js.map R config/plugins/visualizations/charts/static/repository/build/jqplot_bar.js R config/plugins/visualizations/charts/static/repository/build/jqplot_bar.js.map R config/plugins/visualizations/charts/static/repository/build/jqplot_boxplot.js R config/plugins/visualizations/charts/static/repository/build/jqplot_boxplot.js.map R config/plugins/visualizations/charts/static/repository/build/jqplot_histogram_discrete.js R config/plugins/visualizations/charts/static/repository/build/jqplot_histogram_discrete.js.map R config/plugins/visualizations/charts/static/repository/build/jqplot_line.js R config/plugins/visualizations/charts/static/repository/build/jqplot_line.js.map R config/plugins/visualizations/charts/static/repository/build/jqplot_scatter.js R config/plugins/visualizations/charts/static/repository/build/jqplot_scatter.js.map R config/plugins/visualizations/charts/static/repository/build/ngl_viewer.js R config/plugins/visualizations/charts/static/repository/build/ngl_viewer.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_bar.js R config/plugins/visualizations/charts/static/repository/build/nvd3_bar.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_bar_horizontal.js R config/plugins/visualizations/charts/static/repository/build/nvd3_bar_horizontal.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_bar_horizontal_stacked.js R config/plugins/visualizations/charts/static/repository/build/nvd3_bar_horizontal_stacked.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_bar_stacked.js R config/plugins/visualizations/charts/static/repository/build/nvd3_bar_stacked.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_histogram.js R config/plugins/visualizations/charts/static/repository/build/nvd3_histogram.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_histogram_discrete.js R config/plugins/visualizations/charts/static/repository/build/nvd3_histogram_discrete.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_line.js R config/plugins/visualizations/charts/static/repository/build/nvd3_line.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_line_focus.js R config/plugins/visualizations/charts/static/repository/build/nvd3_line_focus.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_pie.js R config/plugins/visualizations/charts/static/repository/build/nvd3_pie.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_scatter.js R config/plugins/visualizations/charts/static/repository/build/nvd3_scatter.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_stackedarea.js R config/plugins/visualizations/charts/static/repository/build/nvd3_stackedarea.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_stackedarea_full.js R config/plugins/visualizations/charts/static/repository/build/nvd3_stackedarea_full.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_stackedarea_stream.js R config/plugins/visualizations/charts/static/repository/build/nvd3_stackedarea_stream.js.map R config/plugins/visualizations/charts/static/repository/build/others_example.js R config/plugins/visualizations/charts/static/repository/build/others_example.js.map R config/plugins/visualizations/charts/static/repository/build/others_heatmap.js R config/plugins/visualizations/charts/static/repository/build/others_heatmap.js.map R config/plugins/visualizations/charts/static/repository/build/others_heatmap_cluster.js R config/plugins/visualizations/charts/static/repository/build/others_heatmap_cluster.js.map R config/plugins/visualizations/charts/static/repository/build/pv_viewer.js R config/plugins/visualizations/charts/static/repository/build/pv_viewer.js.map R config/plugins/visualizations/charts/static/repository/build/registry.js R config/plugins/visualizations/charts/static/repository/build/registry.js.map R config/plugins/visualizations/charts/static/repository/build/registry.tmp.js R config/plugins/visualizations/charts/static/repository/plugins/benfred/venn.css R config/plugins/visualizations/charts/static/repository/plugins/benfred/venn.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/biojs.msa.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/drawrna.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/layout.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/base.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/connection.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/getnaview.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/loop.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/naview.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/radloop.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/region.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/radiate/getradiate.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/models/link.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/models/linkcol.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/models/ncanno.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/models/residue.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/models/residuecol.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/models/structure.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/utils/.Rhistory R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/utils/lasso.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/utils/parsedbr.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/utils/spectrum.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/utils/style.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/views/annoview.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/views/optspanel.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/views/seqpanel.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/views/vispanel.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/phylocanvas/phylocanvas.js R config/plugins/visualizations/charts/static/repository/plugins/cytoscape/cytoscape.js R config/plugins/visualizations/charts/static/repository/plugins/jqplot/jquery.jqplot.css R config/plugins/visualizations/charts/static/repository/plugins/jqplot/jquery.jqplot.js R config/plugins/visualizations/charts/static/repository/plugins/jqplot/jquery.jqplot.plugins.js R config/plugins/visualizations/charts/static/repository/plugins/ngl/viewer.js R config/plugins/visualizations/charts/static/repository/plugins/nvd3/nv.d3.css R config/plugins/visualizations/charts/static/repository/plugins/nvd3/nv.d3.js R config/plugins/visualizations/charts/static/repository/plugins/pv/viewer.js R config/plugins/visualizations/charts/static/repository/registry.json R config/plugins/visualizations/charts/static/repository/utilities/jobs.js R config/plugins/visualizations/charts/static/repository/utilities/sifjson.js R config/plugins/visualizations/charts/static/repository/utilities/utils.js R config/plugins/visualizations/charts/static/repository/visualizations/benfred/venn/config.js R config/plugins/visualizations/charts/static/repository/visualizations/benfred/venn/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/benfred/venn/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/biojs/drawrnajs/config.js R config/plugins/visualizations/charts/static/repository/visualizations/biojs/drawrnajs/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/biojs/drawrnajs/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/biojs/msa/config.js R config/plugins/visualizations/charts/static/repository/visualizations/biojs/msa/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/biojs/msa/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/config.js R config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/cytoscape/viewer/config.js R config/plugins/visualizations/charts/static/repository/visualizations/cytoscape/viewer/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/cytoscape/viewer/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/bar/config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/bar/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/bar/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/boxplot/config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/boxplot/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/boxplot/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/common/config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/common/plot-config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/common/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/histogram_discrete/config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/histogram_discrete/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/histogram_discrete/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/line/config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/line/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/line/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/scatter/config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/scatter/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/scatter/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/ngl/viewer/config.js R config/plugins/visualizations/charts/static/repository/visualizations/ngl/viewer/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/ngl/viewer/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_horizontal/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_horizontal/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_horizontal/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_horizontal_stacked/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_horizontal_stacked/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_horizontal_stacked/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_stacked/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_stacked/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_stacked/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/common/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/common/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/histogram/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/histogram/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/histogram/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/histogram_discrete/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/histogram_discrete/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/histogram_discrete/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/line/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/line/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/line/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/line_focus/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/line_focus/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/line_focus/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/pie/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/pie/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/pie/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/scatter/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/scatter/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/scatter/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea_full/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea_full/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea_full/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea_stream/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea_stream/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea_stream/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/others/example/config.js R config/plugins/visualizations/charts/static/repository/visualizations/others/example/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/others/example/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap/config.js R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap/heatmap-parameters.js R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap/heatmap-plugin.js R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap_cluster/config.js R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap_cluster/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap_cluster/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/pv/viewer/config.js R config/plugins/visualizations/charts/static/repository/visualizations/pv/viewer/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/pv/viewer/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/utilities/tabular-datasets.js R config/plugins/visualizations/charts/static/repository/visualizations/utilities/tabular-form.js R config/plugins/visualizations/charts/static/repository/visualizations/utilities/tabular-utilities.js R config/plugins/visualizations/charts/templates/charts.mako R config/plugins/visualizations/charts/webpack.config.js A config/plugins/visualizations/nvd3/package.json A config/plugins/visualizations/nvd3/static/bundle.js A config/plugins/visualizations/nvd3/static/bundle.js.map A config/plugins/visualizations/nvd3/static/entry.js A config/plugins/visualizations/nvd3/static/plugin/nv.d3.css A config/plugins/visualizations/nvd3/static/plugin/nv.d3.js A config/plugins/visualizations/nvd3/static/utilities/jobs.js A config/plugins/visualizations/nvd3/static/utilities/tabular-datasets.js A config/plugins/visualizations/nvd3/static/utilities/tabular-utilities.js A config/plugins/visualizations/nvd3/static/utilities/utils.js A config/plugins/visualizations/nvd3/webpack.config.js Log Message: ----------- Add bundle for nvd3 Commit: 964c82329c3a8bdc2c47ab5f2412e8c23be12ef6 https://github.com/galaxyproject/galaxy/commit/964c82329c3a8bdc2c47ab5f2412e... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: R config/plugins/visualizations/nvd3/package.json R config/plugins/visualizations/nvd3/static/bundle.js R config/plugins/visualizations/nvd3/static/bundle.js.map R config/plugins/visualizations/nvd3/static/entry.js R config/plugins/visualizations/nvd3/static/plugin/nv.d3.css R config/plugins/visualizations/nvd3/static/plugin/nv.d3.js R config/plugins/visualizations/nvd3/static/utilities/jobs.js R config/plugins/visualizations/nvd3/static/utilities/tabular-datasets.js R config/plugins/visualizations/nvd3/static/utilities/tabular-utilities.js R config/plugins/visualizations/nvd3/static/utilities/utils.js R config/plugins/visualizations/nvd3/webpack.config.js Log Message: ----------- Fix entry name Commit: 778f92155ca6e19a3755fac7423dec9ac5a033cb https://github.com/galaxyproject/galaxy/commit/778f92155ca6e19a3755fac7423de... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/nvd3bar/package.json A config/plugins/visualizations/nvd3bar/static/bundle.js A config/plugins/visualizations/nvd3bar/static/bundle.js.map A config/plugins/visualizations/nvd3bar/static/logo.png A config/plugins/visualizations/nvd3bar/static/nvd3.js A config/plugins/visualizations/nvd3bar/static/plugin/nv.d3.css A config/plugins/visualizations/nvd3bar/static/plugin/nv.d3.js A config/plugins/visualizations/nvd3bar/static/utilities/jobs.js A config/plugins/visualizations/nvd3bar/static/utilities/tabular-datasets.js A config/plugins/visualizations/nvd3bar/static/utilities/tabular-utilities.js A config/plugins/visualizations/nvd3bar/static/utilities/utils.js A config/plugins/visualizations/nvd3bar/webpack.config.js Log Message: ----------- Add webpack config and bundle files Commit: 4b158e3f7a39f8019fc1af81e88e32b2e2adeb7d https://github.com/galaxyproject/galaxy/commit/4b158e3f7a39f8019fc1af81e88e3... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3bar/config/nvd3bar.xml M lib/galaxy/visualization/plugins/config_parser.py Log Message: ----------- Add macro support to visualization xmls Commit: 8c3babfd1823137879797ce8af932c45741b8b18 https://github.com/galaxyproject/galaxy/commit/8c3babfd1823137879797ce8af932... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3bar/config/nvd3bar.xml A config/plugins/visualizations/nvd3bar/config/nvd3shared.xml Log Message: ----------- Add shared parameters Commit: 0451024aa08cbd7d4b96b01c9ef35d72554290fd https://github.com/galaxyproject/galaxy/commit/0451024aa08cbd7d4b96b01c9ef35... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3bar/config/nvd3bar.xml M config/plugins/visualizations/nvd3bar/config/nvd3shared.xml M lib/galaxy/util/xml_macros.py Log Message: ----------- Disable base name sanitization of macro imports for now Commit: 2b50fe94af3d12649ed76251cf1ec3ca4cc3a147 https://github.com/galaxyproject/galaxy/commit/2b50fe94af3d12649ed76251cf1ec... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3bar/config/nvd3bar.xml M config/plugins/visualizations/nvd3bar/config/nvd3shared.xml A config/plugins/visualizations/nvd3scatter/config/nvd3scatter.xml A config/plugins/visualizations/nvd3scatter/static/logo.png Log Message: ----------- Add scatter plot configuration Commit: f56cb32fb722640fa63b943293eb146b819070c4 https://github.com/galaxyproject/galaxy/commit/f56cb32fb722640fa63b943293eb1... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/nvd3_bar/config/nvd3_bar.xml A config/plugins/visualizations/nvd3_bar/config/nvd3_shared.xml A config/plugins/visualizations/nvd3_bar/package.json A config/plugins/visualizations/nvd3_bar/static/logo.png A config/plugins/visualizations/nvd3_bar/static/nvd3.js A config/plugins/visualizations/nvd3_bar/static/plugin/nv.d3.css A config/plugins/visualizations/nvd3_bar/static/plugin/nv.d3.js A config/plugins/visualizations/nvd3_bar/static/utilities/jobs.js A config/plugins/visualizations/nvd3_bar/static/utilities/tabular-datasets.js A config/plugins/visualizations/nvd3_bar/static/utilities/tabular-utilities.js A config/plugins/visualizations/nvd3_bar/static/utilities/utils.js A config/plugins/visualizations/nvd3_bar/webpack.config.js A config/plugins/visualizations/nvd3_horizontal/config/nvd3_horizontal.xml A config/plugins/visualizations/nvd3_horizontal/static/logo.png A config/plugins/visualizations/nvd3_horizontal_stacked/config.js A config/plugins/visualizations/nvd3_horizontal_stacked/config/nvd3_horizontal_stacked.xml A config/plugins/visualizations/nvd3_horizontal_stacked/static/logo.png A config/plugins/visualizations/nvd3_scatter/config/nvd3_scatter.xml A config/plugins/visualizations/nvd3_scatter/static/logo.png R config/plugins/visualizations/nvd3bar/config/nvd3bar.xml R config/plugins/visualizations/nvd3bar/config/nvd3shared.xml R config/plugins/visualizations/nvd3bar/package.json R config/plugins/visualizations/nvd3bar/static/bundle.js R config/plugins/visualizations/nvd3bar/static/bundle.js.map R config/plugins/visualizations/nvd3bar/static/logo.png R config/plugins/visualizations/nvd3bar/static/nvd3.js R config/plugins/visualizations/nvd3bar/static/plugin/nv.d3.css R config/plugins/visualizations/nvd3bar/static/plugin/nv.d3.js R config/plugins/visualizations/nvd3bar/static/utilities/jobs.js R config/plugins/visualizations/nvd3bar/static/utilities/tabular-datasets.js R config/plugins/visualizations/nvd3bar/static/utilities/tabular-utilities.js R config/plugins/visualizations/nvd3bar/static/utilities/utils.js R config/plugins/visualizations/nvd3bar/webpack.config.js R config/plugins/visualizations/nvd3scatter/config/nvd3scatter.xml R config/plugins/visualizations/nvd3scatter/static/logo.png Log Message: ----------- Use underscores to specify nvd3 types Commit: d871196c5e70ee089d357a0c252321bd6e06f920 https://github.com/galaxyproject/galaxy/commit/d871196c5e70ee089d357a0c25232... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/nvd3_bar_stacked/config/nvd3_bar_stacked.xml A config/plugins/visualizations/nvd3_bar_stacked/static/logo.png R config/plugins/visualizations/nvd3_horizontal_stacked/config.js Log Message: ----------- Add config for stacked bars Commit: 5e8bd49b126b91cdbf2b2c29988e1395bb4a6670 https://github.com/galaxyproject/galaxy/commit/5e8bd49b126b91cdbf2b2c29988e1... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/nvd3_histogram/config/nvd3_histogram.xml A config/plugins/visualizations/nvd3_histogram/static/logo.png A config/plugins/visualizations/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml A config/plugins/visualizations/nvd3_histogram_discrete/static/logo.png A config/plugins/visualizations/nvd3_line/config/nvd3_line.xml A config/plugins/visualizations/nvd3_line/static/logo.png A config/plugins/visualizations/nvd3_line_focus/config/nvd3_line_focus.xml A config/plugins/visualizations/nvd3_line_focus/static/logo.png A config/plugins/visualizations/nvd3_pie/config/nvd3_pie.xml A config/plugins/visualizations/nvd3_pie/static/logo.png A config/plugins/visualizations/nvd3_stackedarea/config/nvd3_stackedarea.xml A config/plugins/visualizations/nvd3_stackedarea/static/logo.png A config/plugins/visualizations/nvd3_stackedarea_full/config/nvd3_stackedarea_full.xml A config/plugins/visualizations/nvd3_stackedarea_full/static/logo.png A config/plugins/visualizations/nvd3_stackedarea_stream/config/nvd3_stackedarea_stream.xml A config/plugins/visualizations/nvd3_stackedarea_stream/static/logo.png Log Message: ----------- Add remaining configuration files for nvd3 visualizations Commit: 83c27b629a2e6d17a8ce955f3de1586fce6581da https://github.com/galaxyproject/galaxy/commit/83c27b629a2e6d17a8ce955f3de15... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/common/templates/chart_entry_point.mako Log Message: ----------- Fix chart entry point mako Commit: e011371096401673c2774ac6e3201323ab7c0baf https://github.com/galaxyproject/galaxy/commit/e011371096401673c2774ac6e3201... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/config/nvd3_bar.xml M config/plugins/visualizations/nvd3_bar_stacked/config/nvd3_bar_stacked.xml M config/plugins/visualizations/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml M config/plugins/visualizations/nvd3_horizontal/config/nvd3_horizontal.xml M config/plugins/visualizations/nvd3_horizontal_stacked/config/nvd3_horizontal_stacked.xml M config/plugins/visualizations/nvd3_line/config/nvd3_line.xml M config/plugins/visualizations/nvd3_line_focus/config/nvd3_line_focus.xml M config/plugins/visualizations/nvd3_pie/config/nvd3_pie.xml M config/plugins/visualizations/nvd3_stackedarea/config/nvd3_stackedarea.xml M config/plugins/visualizations/nvd3_stackedarea_full/config/nvd3_stackedarea_full.xml M config/plugins/visualizations/nvd3_stackedarea_stream/config/nvd3_stackedarea_stream.xml Log Message: ----------- Fix indention Commit: a0fa19048a49c662afa0a6e068aeeebe322c8a6d https://github.com/galaxyproject/galaxy/commit/a0fa19048a49c662afa0a6e068aee... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M lib/galaxy/visualization/plugins/plugin.py Log Message: ----------- Fix bug with non-static-serving viz urls that was causing a browser crash Commit: 2b0fbe80ebc8814d2d6bba8bae0dcab9922a418d https://github.com/galaxyproject/galaxy/commit/2b0fbe80ebc8814d2d6bba8bae0dc... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/chart.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/ui/ui-thumbnails.js M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/components/model.js M client/galaxy/scripts/mvc/visualization/chart/components/screenshot.js M client/galaxy/scripts/mvc/visualization/chart/views/description.js M client/galaxy/scripts/mvc/visualization/chart/views/editor.js M client/galaxy/scripts/mvc/visualization/chart/views/groups.js M client/galaxy/scripts/mvc/visualization/chart/views/settings.js M client/galaxy/scripts/mvc/visualization/chart/views/viewer.js M client/galaxy/scripts/mvc/visualization/chart/views/viewport.js M client/galaxy/scripts/mvc/visualization/visualization-view.js Log Message: ----------- Client formatting. Commit: 73486849e03f3bbe6daaebd7953b39a6b3a65d67 https://github.com/galaxyproject/galaxy/commit/73486849e03f3bbe6daaebd7953b3... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js Log Message: ----------- Fix scratchbook link click function, remove some unused vars. Commit: 1e9c8cf57a7f9a3978416bc0ba706f0cd7a858fd https://github.com/galaxyproject/galaxy/commit/1e9c8cf57a7f9a3978416bc0ba706... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/apps/chart.js Log Message: ----------- Extend instead of overwrite window.bundleEntries Commit: 2b0074be26c725a708aa4150ac7e723b86889ee9 https://github.com/galaxyproject/galaxy/commit/2b0074be26c725a708aa4150ac7e7... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/components/model.js M client/galaxy/scripts/mvc/visualization/chart/components/screenshot.js M client/galaxy/scripts/mvc/visualization/chart/views/editor.js M client/galaxy/scripts/mvc/visualization/chart/views/groups.js M client/galaxy/scripts/mvc/visualization/chart/views/settings.js M client/galaxy/scripts/mvc/visualization/chart/views/viewer.js M client/galaxy/scripts/mvc/visualization/chart/views/viewport.js M client/galaxy/scripts/mvc/visualization/visualization-view.js Log Message: ----------- Remove unused imports, vars, some minor refactoring for clarity. Commit: 039bdfb2d460fc3dc0b01d1cf2d601e9270e8378 https://github.com/galaxyproject/galaxy/commit/039bdfb2d460fc3dc0b01d1cf2d60... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/ui/ui-thumbnails.js Log Message: ----------- Minor var cleanup in ui-thumbnails Commit: 172f9317d2c25246a04f0297347d1ce08a9420b6 https://github.com/galaxyproject/galaxy/commit/172f9317d2c25246a04f0297347d1... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/views/editor.js Log Message: ----------- Minor refactoring trying to fix chart viz launch Commit: 660df78c7cb2d4e8858686191d54788e43bfa7aa https://github.com/galaxyproject/galaxy/commit/660df78c7cb2d4e8858686191d547... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/package.json Log Message: ----------- Grunt is not used here Commit: 04c71f33e3f802233da60ae1eab333c82bb5ba42 https://github.com/galaxyproject/galaxy/commit/04c71f33e3f802233da60ae1eab33... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/package.json R config/plugins/visualizations/nvd3_bar/static/plugin/nv.d3.css R config/plugins/visualizations/nvd3_bar/static/plugin/nv.d3.js R config/plugins/visualizations/nvd3_bar/webpack.config.js Log Message: ----------- Incremental step swapping to parcel for viz building -- simpler, faster, zero config (ish). Commit: 65590f1350245753f04fcc132775fef54d86b172 https://github.com/galaxyproject/galaxy/commit/65590f1350245753f04fcc132775f... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/static/nvd3.js Log Message: ----------- nvd3 formatting Commit: 939bbff6d81fcde264323819f548efcadac9b463 https://github.com/galaxyproject/galaxy/commit/939bbff6d81fcde264323819f548e... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/nvd3_bar/dist/nvd3.js A config/plugins/visualizations/nvd3_bar/package-lock.json M config/plugins/visualizations/nvd3_bar/package.json M config/plugins/visualizations/nvd3_bar/static/nvd3.js Log Message: ----------- Add a few package dependencies, convert to es6 imports, and build to dist. Commit: ae0da08047a06231578de3ec98e8e7662c7c03a5 https://github.com/galaxyproject/galaxy/commit/ae0da08047a06231578de3ec98e8e... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: R config/plugins/visualizations/nvd3_bar/package-lock.json Log Message: ----------- Remove package-lock Commit: d9c445796f43dc1a2d1d811c21d50915eac40f78 https://github.com/galaxyproject/galaxy/commit/d9c445796f43dc1a2d1d811c21d50... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/dist/nvd3.js M config/plugins/visualizations/nvd3_bar/package.json Log Message: ----------- transpile es6 for nvd3 Commit: 5848c991caf5dd271d16cb346d286b6c1e1f0a58 https://github.com/galaxyproject/galaxy/commit/5848c991caf5dd271d16cb346d286... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/nvd3_bar/.babelrc Log Message: ----------- Add .babelrc with env preset. Commit: 3329bf8907410b7eb8fec45a40fa5ce3072d0c38 https://github.com/galaxyproject/galaxy/commit/3329bf8907410b7eb8fec45a40fa5... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/dist/nvd3.js M config/plugins/visualizations/nvd3_bar/static/nvd3.js Log Message: ----------- Add d3 for correct imports in nvd3 chart Commit: f65d42d4fd298ed34110425f88523d868b94b834 https://github.com/galaxyproject/galaxy/commit/f65d42d4fd298ed34110425f88523... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/scatterplot/package.json A config/plugins/visualizations/scatterplot/src/numeric-column-stats.js M config/plugins/visualizations/scatterplot/src/scatterplot.js A config/plugins/visualizations/scatterplot/src/worker-stats.js A config/plugins/visualizations/scatterplot/static/8850628034555be072a0e4f882d4d8e5.js R config/plugins/visualizations/scatterplot/static/numeric-column-stats.js R config/plugins/visualizations/scatterplot/static/scatterplot.bundle.js A config/plugins/visualizations/scatterplot/static/scatterplot.js R config/plugins/visualizations/scatterplot/static/worker-stats.js M config/plugins/visualizations/scatterplot/templates/scatterplot.mako Log Message: ----------- Initial parcel building for scatterplot Commit: b6b31e0853bc486065fd3d7b917aa80fdbde18ff https://github.com/galaxyproject/galaxy/commit/b6b31e0853bc486065fd3d7b917aa... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: R config/plugins/visualizations/scatterplot/webpack.config.js Log Message: ----------- Remove unused webpack config Commit: 16405ce19aa14c5a2a744fc3d0d15cd03bc5c385 https://github.com/galaxyproject/galaxy/commit/16405ce19aa14c5a2a744fc3d0d15... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/apps/chart.js M client/galaxy/scripts/mvc/visualization/chart/chart-client.js Log Message: ----------- Directly export charts client as view Commit: 8518432e265ed90b377409d621b5b64170fd86d3 https://github.com/galaxyproject/galaxy/commit/8518432e265ed90b377409d621b5b... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/package.json Log Message: ----------- Move packed nvd3 build to static directory Commit: 49618cf061f1873d2e5c83f4771ef1b7951aa33b https://github.com/galaxyproject/galaxy/commit/49618cf061f1873d2e5c83f4771ef... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/common/templates/chart_entry_point.mako M config/plugins/visualizations/nvd3_bar/config/nvd3_bar.xml M config/plugins/visualizations/nvd3_bar/package.json M config/plugins/visualizations/nvd3_bar/static/nvd3.js Log Message: ----------- Remove require libs from common mako endpoint Commit: a0ad05494cbe109a58932b1a51cfc814719093e1 https://github.com/galaxyproject/galaxy/commit/a0ad05494cbe109a58932b1a51cfc... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/views/editor.js M client/galaxy/scripts/mvc/visualization/chart/views/viewport.js M config/plugins/visualizations/common/templates/chart_entry_point.mako M config/plugins/visualizations/common/templates/script_entry_point.mako M config/plugins/visualizations/nvd3_bar/config/nvd3_bar.xml M config/plugins/visualizations/nvd3_bar/static/utilities/tabular-datasets.js M config/plugins/visualizations/nvd3_bar/static/utilities/tabular-utilities.js M config/plugins/visualizations/nvd3_bar/static/utilities/utils.js M lib/galaxy/visualization/plugins/plugin.py Log Message: ----------- Load nvd3 plugins into bundle Commit: be3d22215c6b91d8d1111a525663c32eb7b1bdd1 https://github.com/galaxyproject/galaxy/commit/be3d22215c6b91d8d1111a525663c... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/common/templates/chart_entry_point.mako M config/plugins/visualizations/nvd3_bar/config/nvd3_shared.xml Log Message: ----------- Fix Commit: ebb8f05c6d99ecb6d151c5b83b470f7b7bea5f8c https://github.com/galaxyproject/galaxy/commit/ebb8f05c6d99ecb6d151c5b83b470... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/views/groups.js M client/galaxy/scripts/mvc/visualization/chart/views/settings.js M client/galaxy/scripts/mvc/visualization/chart/views/viewport.js M config/plugins/visualizations/common/templates/chart_entry_point.mako M config/plugins/visualizations/nvd3_bar/config/nvd3_bar.xml M config/plugins/visualizations/nvd3_bar/package.json A config/plugins/visualizations/nvd3_bar/src/utilities/datasets.js A config/plugins/visualizations/nvd3_bar/src/utilities/helpers.js A config/plugins/visualizations/nvd3_bar/src/utilities/jobs.js A config/plugins/visualizations/nvd3_bar/src/utilities/utils.js R config/plugins/visualizations/nvd3_bar/static/utilities/jobs.js R config/plugins/visualizations/nvd3_bar/static/utilities/tabular-datasets.js R config/plugins/visualizations/nvd3_bar/static/utilities/tabular-utilities.js R config/plugins/visualizations/nvd3_bar/static/utilities/utils.js Log Message: ----------- Fixes for nvd3 viewer, import styles, link entry function Commit: f9107934b8373aac40673bcfe91233f1c48677c5 https://github.com/galaxyproject/galaxy/commit/f9107934b8373aac40673bcfe9123... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/apps/chart.js A client/galaxy/scripts/mvc/visualization/chart/utilities/datasets.js A client/galaxy/scripts/mvc/visualization/chart/utilities/helpers.js A client/galaxy/scripts/mvc/visualization/chart/utilities/jobs.js A client/galaxy/scripts/mvc/visualization/chart/utilities/utils.js R config/plugins/visualizations/nvd3_bar/src/utilities/datasets.js R config/plugins/visualizations/nvd3_bar/src/utilities/helpers.js R config/plugins/visualizations/nvd3_bar/src/utilities/jobs.js R config/plugins/visualizations/nvd3_bar/src/utilities/utils.js Log Message: ----------- Prepare shared chart utility features Commit: 21e065052e714acc4708c94cc0b8923ab55160ca https://github.com/galaxyproject/galaxy/commit/21e065052e714acc4708c94cc0b89... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: R client/galaxy/scripts/mvc/visualization/chart/utilities/utils.js Log Message: ----------- Remove unused utils helper Commit: 2b3c517161f701bfcf2a549ee3dbf03c5a7e4598 https://github.com/galaxyproject/galaxy/commit/2b3c517161f701bfcf2a549ee3dbf... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/package.json A config/plugins/visualizations/nvd3_bar/src/nvd3.js M config/plugins/visualizations/nvd3_bar/static/nvd3.js Log Message: ----------- D3 / NVD3 compatability changes, use from node_modules. Still need to add zoom customization. Commit: dea41ef60c245f8bc4dbe25a8f85c9d03c95c586 https://github.com/galaxyproject/galaxy/commit/dea41ef60c245f8bc4dbe25a8f85c... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/common/templates/chart_entry_point.mako Log Message: ----------- Drop d3 from inline chart_entry_point libs; we should look at the rest of these, too, probably. Commit: 2683cc527550dfc27fae0885efc4ac9615302772 https://github.com/galaxyproject/galaxy/commit/2683cc527550dfc27fae0885efc4a... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/nvd3_bar/static/nvd3.css Log Message: ----------- Add bundled nvd3 css; this got dropped during rebases. Commit: df90cc78addf1b2adc711347c54c399373f241c2 https://github.com/galaxyproject/galaxy/commit/df90cc78addf1b2adc711347c54c3... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/src/nvd3.js Log Message: ----------- Fix tooltips to use new nvd3 chart generator. Commit: 62e4e0da8664490b20e3b090bd211d1cc3fe40d4 https://github.com/galaxyproject/galaxy/commit/62e4e0da8664490b20e3b090bd211... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/apps/chart.js M client/galaxy/scripts/mvc/visualization/chart/utilities/datasets.js M client/galaxy/scripts/mvc/visualization/chart/utilities/helpers.js M client/galaxy/scripts/mvc/visualization/chart/utilities/jobs.js Log Message: ----------- Client cleanup, no functional change. Commit: fa3d12a33cb6185cd9988a9e9d74d16993510995 https://github.com/galaxyproject/galaxy/commit/fa3d12a33cb6185cd9988a9e9d74d... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: R config/plugins/visualizations/nvd3_bar/dist/nvd3.js M config/plugins/visualizations/nvd3_bar/static/nvd3.js Log Message: ----------- Build final nvd3.js with included deps Commit: 719383fbea2d7cadf347967fb40e344a6be46e94 https://github.com/galaxyproject/galaxy/commit/719383fbea2d7cadf347967fb40e3... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/package.json M config/plugins/visualizations/nvd3_bar/src/nvd3.js M config/plugins/visualizations/nvd3_bar/static/nvd3.js Log Message: ----------- Fix y-axis label for nvd3, fix duration Commit: 525bc13d8dadbf5164f60967bdd2f01c2fc13ef6 https://github.com/galaxyproject/galaxy/commit/525bc13d8dadbf5164f60967bdd2f... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/config/nvd3_bar.xml M config/plugins/visualizations/nvd3_bar/src/nvd3.js M config/plugins/visualizations/nvd3_bar/static/nvd3.js M config/plugins/visualizations/nvd3_scatter/config/nvd3_scatter.xml Log Message: ----------- Add entry function for scatter plot Commit: 171dcc1e24f84c2f7818105ec29788d767ce1aac https://github.com/galaxyproject/galaxy/commit/171dcc1e24f84c2f7818105ec2978... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/src/nvd3.js M config/plugins/visualizations/nvd3_bar/static/nvd3.js Log Message: ----------- Add zooming feature Commit: 21fb51782cc38e8ead0833417cf4bf0f6d091b73 https://github.com/galaxyproject/galaxy/commit/21fb51782cc38e8ead0833417cf4b... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/src/nvd3.js M config/plugins/visualizations/nvd3_bar/static/nvd3.js Log Message: ----------- Remove duration, interference with zooming Commit: 159a8c72bc69c8c19d4dd6e039d801a6740d4921 https://github.com/galaxyproject/galaxy/commit/159a8c72bc69c8c19d4dd6e039d80... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/src/nvd3.js Log Message: ----------- Add another fallback value for tooltips Commit: de7cac90537b4bd9fa9500cb55b314408a5a1f06 https://github.com/galaxyproject/galaxy/commit/de7cac90537b4bd9fa9500cb55b31... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3_bar/config/nvd3_bar.xml Log Message: ----------- Remove zoomable flag for barcharts Commit: 00a105ef6a28add188b9356572e89392b3517099 https://github.com/galaxyproject/galaxy/commit/00a105ef6a28add188b9356572e89... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/apps/chart.js M client/galaxy/scripts/mvc/visualization/chart/utilities/datasets.js R client/galaxy/scripts/mvc/visualization/chart/utilities/helpers.js M client/galaxy/scripts/mvc/visualization/chart/utilities/jobs.js M config/plugins/visualizations/nvd3_bar/src/nvd3.js M config/plugins/visualizations/nvd3_bar/static/nvd3.js Log Message: ----------- Revise shared utilities Commit: 91c4641c886c1f1015218abb34f541aff7a82bdd https://github.com/galaxyproject/galaxy/commit/91c4641c886c1f1015218abb34f54... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/nvd3/nvd3_bar/.babelrc A config/plugins/visualizations/nvd3/nvd3_bar/config/nvd3_bar.xml A config/plugins/visualizations/nvd3/nvd3_bar/config/nvd3_shared.xml A config/plugins/visualizations/nvd3/nvd3_bar/package.json A config/plugins/visualizations/nvd3/nvd3_bar/src/nvd3.js A config/plugins/visualizations/nvd3/nvd3_bar/static/logo.png A config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.css A config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.js A config/plugins/visualizations/nvd3/nvd3_bar_stacked/config/nvd3_bar_stacked.xml A config/plugins/visualizations/nvd3/nvd3_bar_stacked/static/logo.png R config/plugins/visualizations/nvd3_bar/.babelrc R config/plugins/visualizations/nvd3_bar/config/nvd3_bar.xml R config/plugins/visualizations/nvd3_bar/config/nvd3_shared.xml R config/plugins/visualizations/nvd3_bar/package.json R config/plugins/visualizations/nvd3_bar/src/nvd3.js R config/plugins/visualizations/nvd3_bar/static/logo.png R config/plugins/visualizations/nvd3_bar/static/nvd3.css R config/plugins/visualizations/nvd3_bar/static/nvd3.js R config/plugins/visualizations/nvd3_bar_stacked/config/nvd3_bar_stacked.xml R config/plugins/visualizations/nvd3_bar_stacked/static/logo.png M lib/galaxy/visualization/plugins/registry.py Log Message: ----------- Allow plugins to be placed into first level sub directories Commit: 055e0fa167d77c94c03166bea65fe432867af226 https://github.com/galaxyproject/galaxy/commit/055e0fa167d77c94c03166bea65fe... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3/nvd3_bar_stacked/config/nvd3_bar_stacked.xml A config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml A config/plugins/visualizations/nvd3/nvd3_histogram/static/logo.png A config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml A config/plugins/visualizations/nvd3/nvd3_histogram_discrete/static/logo.png A config/plugins/visualizations/nvd3/nvd3_horizontal/config/nvd3_horizontal.xml A config/plugins/visualizations/nvd3/nvd3_horizontal/static/logo.png A config/plugins/visualizations/nvd3/nvd3_horizontal_stacked/config/nvd3_horizontal_stacked.xml A config/plugins/visualizations/nvd3/nvd3_horizontal_stacked/static/logo.png A config/plugins/visualizations/nvd3/nvd3_line/config/nvd3_line.xml A config/plugins/visualizations/nvd3/nvd3_line/static/logo.png A config/plugins/visualizations/nvd3/nvd3_line_focus/config/nvd3_line_focus.xml A config/plugins/visualizations/nvd3/nvd3_line_focus/static/logo.png A config/plugins/visualizations/nvd3/nvd3_pie/config/nvd3_pie.xml A config/plugins/visualizations/nvd3/nvd3_pie/static/logo.png A config/plugins/visualizations/nvd3/nvd3_scatter/config/nvd3_scatter.xml A config/plugins/visualizations/nvd3/nvd3_scatter/static/logo.png A config/plugins/visualizations/nvd3/nvd3_stackedarea/config/nvd3_stackedarea.xml A config/plugins/visualizations/nvd3/nvd3_stackedarea/static/logo.png A config/plugins/visualizations/nvd3/nvd3_stackedarea_full/config/nvd3_stackedarea_full.xml A config/plugins/visualizations/nvd3/nvd3_stackedarea_full/static/logo.png A config/plugins/visualizations/nvd3/nvd3_stackedarea_stream/config/nvd3_stackedarea_stream.xml A config/plugins/visualizations/nvd3/nvd3_stackedarea_stream/static/logo.png R config/plugins/visualizations/nvd3_histogram/config/nvd3_histogram.xml R config/plugins/visualizations/nvd3_histogram/static/logo.png R config/plugins/visualizations/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml R config/plugins/visualizations/nvd3_histogram_discrete/static/logo.png R config/plugins/visualizations/nvd3_horizontal/config/nvd3_horizontal.xml R config/plugins/visualizations/nvd3_horizontal/static/logo.png R config/plugins/visualizations/nvd3_horizontal_stacked/config/nvd3_horizontal_stacked.xml R config/plugins/visualizations/nvd3_horizontal_stacked/static/logo.png R config/plugins/visualizations/nvd3_line/config/nvd3_line.xml R config/plugins/visualizations/nvd3_line/static/logo.png R config/plugins/visualizations/nvd3_line_focus/config/nvd3_line_focus.xml R config/plugins/visualizations/nvd3_line_focus/static/logo.png R config/plugins/visualizations/nvd3_pie/config/nvd3_pie.xml R config/plugins/visualizations/nvd3_pie/static/logo.png R config/plugins/visualizations/nvd3_scatter/config/nvd3_scatter.xml R config/plugins/visualizations/nvd3_scatter/static/logo.png R config/plugins/visualizations/nvd3_stackedarea/config/nvd3_stackedarea.xml R config/plugins/visualizations/nvd3_stackedarea/static/logo.png R config/plugins/visualizations/nvd3_stackedarea_full/config/nvd3_stackedarea_full.xml R config/plugins/visualizations/nvd3_stackedarea_full/static/logo.png R config/plugins/visualizations/nvd3_stackedarea_stream/config/nvd3_stackedarea_stream.xml R config/plugins/visualizations/nvd3_stackedarea_stream/static/logo.png Log Message: ----------- Move nvd3 plugins into subdirectory Commit: 83467ca9efa5266c9968be5a598fb5fdd5c3c82e https://github.com/galaxyproject/galaxy/commit/83467ca9efa5266c9968be5a598fb... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3/nvd3_bar/src/nvd3.js M config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.js M config/plugins/visualizations/nvd3/nvd3_pie/config/nvd3_pie.xml Log Message: ----------- Fix remaining nvd3 plugins Commit: 1014b5d5d31232212946e781fd92745133fe5865 https://github.com/galaxyproject/galaxy/commit/1014b5d5d31232212946e781fd927... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M config/plugins/visualizations/common/templates/chart_entry_point.mako A config/plugins/visualizations/ngl/config/ngl.xml A config/plugins/visualizations/ngl/src/ngl.js A config/plugins/visualizations/ngl/src/viewer.js A config/plugins/visualizations/ngl/static/logo.png A config/plugins/visualizations/ngl/static/ngl.js Log Message: ----------- Add ngl viewer Commit: b33ec3b3ca9cf346ae07673d60178d5fff2e7c79 https://github.com/galaxyproject/galaxy/commit/b33ec3b3ca9cf346ae07673d60178... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/ngl/package.json A config/plugins/visualizations/pv/config/pv.xml A config/plugins/visualizations/pv/package.json A config/plugins/visualizations/pv/src/pv.js A config/plugins/visualizations/pv/static/logo.png A config/plugins/visualizations/pv/static/pv.js Log Message: ----------- Add pv protein viewer Commit: 43d45dfee465e55657cbd3c4058541146b03aadf https://github.com/galaxyproject/galaxy/commit/43d45dfee465e55657cbd3c405854... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/venn/config/venn.xml A config/plugins/visualizations/venn/package.json A config/plugins/visualizations/venn/src/script.js A config/plugins/visualizations/venn/src/venn.js A config/plugins/visualizations/venn/static/logo.png A config/plugins/visualizations/venn/static/script.css A config/plugins/visualizations/venn/static/script.js Log Message: ----------- Add venn diagram Commit: 97cab84b0846342f7d723203172f9c697af6066b https://github.com/galaxyproject/galaxy/commit/97cab84b0846342f7d723203172f9... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/msa/config/msa.xml A config/plugins/visualizations/msa/package.json A config/plugins/visualizations/msa/src/msa.js A config/plugins/visualizations/msa/static/logo.png A config/plugins/visualizations/msa/static/script.js Log Message: ----------- Add biojs msa Commit: 820d0b4135e528ce3127daae6fc5d45b0e55dee3 https://github.com/galaxyproject/galaxy/commit/820d0b4135e528ce3127daae6fc5d... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/drawrna/config/drawrna.xml A config/plugins/visualizations/drawrna/package.json A config/plugins/visualizations/drawrna/src/drawrnajs/drawrna.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/layout.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/base.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/connection.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/getnaview.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/loop.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/naview.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/radloop.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/region.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/radiate/getradiate.js A config/plugins/visualizations/drawrna/src/drawrnajs/models/link.js A config/plugins/visualizations/drawrna/src/drawrnajs/models/linkcol.js A config/plugins/visualizations/drawrna/src/drawrnajs/models/ncanno.js A config/plugins/visualizations/drawrna/src/drawrnajs/models/residue.js A config/plugins/visualizations/drawrna/src/drawrnajs/models/residuecol.js A config/plugins/visualizations/drawrna/src/drawrnajs/models/structure.js A config/plugins/visualizations/drawrna/src/drawrnajs/utils/.Rhistory A config/plugins/visualizations/drawrna/src/drawrnajs/utils/lasso.js A config/plugins/visualizations/drawrna/src/drawrnajs/utils/parsedbr.js A config/plugins/visualizations/drawrna/src/drawrnajs/utils/spectrum.js A config/plugins/visualizations/drawrna/src/drawrnajs/utils/style.js A config/plugins/visualizations/drawrna/src/drawrnajs/views/annoview.js A config/plugins/visualizations/drawrna/src/drawrnajs/views/optspanel.js A config/plugins/visualizations/drawrna/src/drawrnajs/views/seqpanel.js A config/plugins/visualizations/drawrna/src/drawrnajs/views/vispanel.js A config/plugins/visualizations/drawrna/src/script.js A config/plugins/visualizations/drawrna/static/logo.png A config/plugins/visualizations/drawrna/static/script.js Log Message: ----------- Add drawrna, with existing code until npm dependency works Commit: c4ca8aba1ff56a540662eba7cefb3c25c9718180 https://github.com/galaxyproject/galaxy/commit/c4ca8aba1ff56a540662eba7cefb3... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/drawrna/static/script.js A config/plugins/visualizations/phylocanvas/config/phylocanvas.xml A config/plugins/visualizations/phylocanvas/package.json A config/plugins/visualizations/phylocanvas/src/script.js A config/plugins/visualizations/phylocanvas/static/logo.png A config/plugins/visualizations/phylocanvas/static/script.js Log Message: ----------- Add phylocanvas, using npm module Commit: d834a3c96865a6b74e1a4c2ce9b692e22d0b65aa https://github.com/galaxyproject/galaxy/commit/d834a3c96865a6b74e1a4c2ce9b69... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/cytoscape/config/cytoscape.xml A config/plugins/visualizations/cytoscape/package.json A config/plugins/visualizations/cytoscape/src/script.js A config/plugins/visualizations/cytoscape/static/logo.png A config/plugins/visualizations/cytoscape/static/script.js Log Message: ----------- Add cytoscape Commit: bedbd06a3983b27e9dc44ab07c5df3cfbd5cfc94 https://github.com/galaxyproject/galaxy/commit/bedbd06a3983b27e9dc44ab07c5df... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/jqplot/jqplot_bar/config/jqplot_bar.xml A config/plugins/visualizations/jqplot/jqplot_bar/config/jqplot_shared.xml A config/plugins/visualizations/jqplot/jqplot_bar/package.json A config/plugins/visualizations/jqplot/jqplot_bar/src/script.js A config/plugins/visualizations/jqplot/jqplot_bar/static/logo.png A config/plugins/visualizations/jqplot/jqplot_bar/static/script.css A config/plugins/visualizations/jqplot/jqplot_bar/static/script.js Log Message: ----------- Add jqplot bar Commit: a19088a68c8d361d39f9b1f9df46de96139ca477 https://github.com/galaxyproject/galaxy/commit/a19088a68c8d361d39f9b1f9df46d... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/jqplot/jqplot_bar/config/jqplot_shared.xml Log Message: ----------- Remove color picker for jqplot Commit: 4f9e0d92394d4b7b5a3e39505a0e52ffc6a7464e https://github.com/galaxyproject/galaxy/commit/4f9e0d92394d4b7b5a3e39505a0e5... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/jqplot/jqplot_bar/config/jqplot_shared.xml M config/plugins/visualizations/nvd3/nvd3_bar/config/nvd3_shared.xml Log Message: ----------- Add legend option to tabular plugins Commit: a770cbcea305aa98d5d4d0583fa5d4de537a580b https://github.com/galaxyproject/galaxy/commit/a770cbcea305aa98d5d4d0583fa5d... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/jqplot/jqplot_bar/src/script.js M config/plugins/visualizations/jqplot/jqplot_bar/static/script.js A config/plugins/visualizations/jqplot/jqplot_box/config/jqplot_box.xml A config/plugins/visualizations/jqplot/jqplot_box/static/logo.png A config/plugins/visualizations/jqplot/jqplot_histogram/config/jqplot_histogram.xml A config/plugins/visualizations/jqplot/jqplot_histogram/static/logo.png A config/plugins/visualizations/jqplot/jqplot_line/config/jqplot_line.xml A config/plugins/visualizations/jqplot/jqplot_line/static/logo.png A config/plugins/visualizations/jqplot/jqplot_scatter/config/jqplot_scatter.xml A config/plugins/visualizations/jqplot/jqplot_scatter/static/logo.png Log Message: ----------- Add remaining jqplot plugins Commit: 35ac99bfe5bccb103965f4f2d73a670a2b04dd80 https://github.com/galaxyproject/galaxy/commit/35ac99bfe5bccb103965f4f2d73a6... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/heatmap/heatmap_cluster/config/heatmap_cluster.xml A config/plugins/visualizations/heatmap/heatmap_cluster/static/logo.png A config/plugins/visualizations/heatmap/heatmap_default/config/heatmap_default.xml A config/plugins/visualizations/heatmap/heatmap_default/config/heatmap_shared.xml A config/plugins/visualizations/heatmap/heatmap_default/package.json A config/plugins/visualizations/heatmap/heatmap_default/src/colorsets.js A config/plugins/visualizations/heatmap/heatmap_default/src/script.js A config/plugins/visualizations/heatmap/heatmap_default/static/logo.png A config/plugins/visualizations/heatmap/heatmap_default/static/script.js Log Message: ----------- Add heatmap plugin Commit: 7f896c84d76ef9879aa70227e15dea6c9390f573 https://github.com/galaxyproject/galaxy/commit/7f896c84d76ef9879aa70227e15de... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/heatmap/heatmap_default/package.json Log Message: ----------- Use version 3 of d3 for heatmap Commit: e829579be3e34e6f0ff1c15327959e818f34cad8 https://github.com/galaxyproject/galaxy/commit/e829579be3e34e6f0ff1c15327959... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A config/plugins/visualizations/example/config/config.js A config/plugins/visualizations/example/config/example.xml A config/plugins/visualizations/example/package.json A config/plugins/visualizations/example/src/script.js A config/plugins/visualizations/example/static/logo.png A config/plugins/visualizations/example/static/script.js Log Message: ----------- Add example plugin Commit: adea33ad935e641ac8acca1646c1e035fd0b9ed8 https://github.com/galaxyproject/galaxy/commit/adea33ad935e641ac8acca1646c1e... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: R config/plugins/visualizations/example/config/config.js M config/plugins/visualizations/example/config/example.xml M config/plugins/visualizations/example/package.json M config/plugins/visualizations/example/src/script.js M config/plugins/visualizations/example/static/script.js Log Message: ----------- Fix example Commit: a64b0835a23019995617f4c8679e4d293777b24c https://github.com/galaxyproject/galaxy/commit/a64b0835a23019995617f4c8679e4... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/components/model.js M config/plugins/visualizations/example/config/example.xml Log Message: ----------- Fix vis saving Commit: 75b9d5f00487c124327ab73c1e7051e8f4a2d1cf https://github.com/galaxyproject/galaxy/commit/75b9d5f00487c124327ab73c1e705... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/components/model.js M client/galaxy/scripts/mvc/visualization/chart/views/editor.js M client/galaxy/scripts/mvc/visualization/chart/views/viewer.js M config/plugins/visualizations/nvd3/nvd3_bar/src/nvd3.js M config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.js Log Message: ----------- Load visualization with default values into the viewer before displaying editor Commit: 3df3f6fe02916f310a901e5dda7b16d64c65ee72 https://github.com/galaxyproject/galaxy/commit/3df3f6fe02916f310a901e5dda7b1... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/ui/ui-thumbnails.js A client/galaxy/scripts/mvc/visualization/chart/utilities/series.js M client/galaxy/scripts/mvc/visualization/visualization-view.js M client/galaxy/style/less/ui.less Log Message: ----------- Load visualization on single click, highlight on hover, add series module Commit: 0f3aacdd919dd2a3d12702d522ed62e652e5ffe3 https://github.com/galaxyproject/galaxy/commit/0f3aacdd919dd2a3d12702d522ed6... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/style/less/ui.less M static/style/blue/base.css Log Message: ----------- Fix highlighting for suggested thumbnails Commit: 67e911b4be3b5d6b1fee686bab3928fd71332ea4 https://github.com/galaxyproject/galaxy/commit/67e911b4be3b5d6b1fee686bab392... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/style/less/ui.less Log Message: ----------- Remove highlighting Commit: ff84aa42706621fee4a6658745bb0fa1a19c19e1 https://github.com/galaxyproject/galaxy/commit/ff84aa42706621fee4a6658745bb0... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/views/viewport.js M config/plugins/visualizations/common/templates/chart_entry_point.mako M config/plugins/visualizations/cytoscape/config/cytoscape.xml M config/plugins/visualizations/cytoscape/src/script.js M config/plugins/visualizations/drawrna/src/script.js M static/style/blue/base.css Log Message: ----------- Use default load function for chart plugins Commit: 77340dded76f75148450c1bdcf47f356a770d330 https://github.com/galaxyproject/galaxy/commit/77340dded76f75148450c1bdcf47f... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/cytoscape/static/script.js M config/plugins/visualizations/drawrna/static/script.js M config/plugins/visualizations/example/config/example.xml M config/plugins/visualizations/example/static/script.js M config/plugins/visualizations/heatmap/heatmap_default/static/script.js M config/plugins/visualizations/jqplot/jqplot_bar/config/jqplot_bar.xml M config/plugins/visualizations/jqplot/jqplot_bar/static/script.js M config/plugins/visualizations/jqplot/jqplot_box/config/jqplot_box.xml M config/plugins/visualizations/jqplot/jqplot_histogram/config/jqplot_histogram.xml M config/plugins/visualizations/jqplot/jqplot_line/config/jqplot_line.xml M config/plugins/visualizations/jqplot/jqplot_scatter/config/jqplot_scatter.xml M config/plugins/visualizations/msa/config/msa.xml M config/plugins/visualizations/msa/static/script.js M config/plugins/visualizations/ngl/config/ngl.xml M config/plugins/visualizations/ngl/src/ngl.js M config/plugins/visualizations/ngl/static/ngl.js M config/plugins/visualizations/nvd3/nvd3_bar/config/nvd3_bar.xml M config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.js M config/plugins/visualizations/nvd3/nvd3_bar_stacked/config/nvd3_bar_stacked.xml M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml M config/plugins/visualizations/nvd3/nvd3_horizontal/config/nvd3_horizontal.xml M config/plugins/visualizations/nvd3/nvd3_horizontal_stacked/config/nvd3_horizontal_stacked.xml M config/plugins/visualizations/nvd3/nvd3_line/config/nvd3_line.xml M config/plugins/visualizations/nvd3/nvd3_line_focus/config/nvd3_line_focus.xml M config/plugins/visualizations/nvd3/nvd3_pie/config/nvd3_pie.xml M config/plugins/visualizations/nvd3/nvd3_scatter/config/nvd3_scatter.xml M config/plugins/visualizations/nvd3/nvd3_stackedarea/config/nvd3_stackedarea.xml M config/plugins/visualizations/nvd3/nvd3_stackedarea_full/config/nvd3_stackedarea_full.xml M config/plugins/visualizations/nvd3/nvd3_stackedarea_stream/config/nvd3_stackedarea_stream.xml M config/plugins/visualizations/phylocanvas/config/phylocanvas.xml M config/plugins/visualizations/phylocanvas/src/script.js M config/plugins/visualizations/pv/config/pv.xml M config/plugins/visualizations/pv/src/pv.js M config/plugins/visualizations/pv/static/pv.js M config/plugins/visualizations/venn/config/venn.xml M config/plugins/visualizations/venn/src/script.js M config/plugins/visualizations/venn/static/script.js Log Message: ----------- Use default load handler Commit: 1afea3eec0c94d0d4bac660ac5674f7d6855b102 https://github.com/galaxyproject/galaxy/commit/1afea3eec0c94d0d4bac660ac5674... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/drawrna/config/drawrna.xml Log Message: ----------- Fix drawrnajs caller Commit: a6529c51d3ca0b0554e1bc4cebf7fdd8383288c7 https://github.com/galaxyproject/galaxy/commit/a6529c51d3ca0b0554e1bc4cebf7f... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M config/plugins/visualizations/common/templates/chart_entry_point.mako Log Message: ----------- Show viewer before initiating load process Commit: 3a0c8b5634f1af656ad5c87a1181d030cae33a8c https://github.com/galaxyproject/galaxy/commit/3a0c8b5634f1af656ad5c87a1181d... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M lib/galaxy/visualization/plugins/config_parser.py Log Message: ----------- Check len of tree elements Commit: 82a1f6e49e016372aa1a5a615f305900953bdd88 https://github.com/galaxyproject/galaxy/commit/82a1f6e49e016372aa1a5a615f305... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/utilities/datasets.js M config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.js Log Message: ----------- Improve resilience of dataset loader Commit: cea4db4a53ca25d4d92a9bed2b181cee65d838d7 https://github.com/galaxyproject/galaxy/commit/cea4db4a53ca25d4d92a9bed2b181... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/components/model.js Log Message: ----------- Fix visualization name parsing when saving visualizations Commit: 4af913f7dfb55e1ddc028296063d1cab046cf956 https://github.com/galaxyproject/galaxy/commit/4af913f7dfb55e1ddc028296063d1... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M test/api/test_visualizations.py Log Message: ----------- Fix visualization type Commit: 3c7b621b3b320d98025caa7981c70afe864c472f https://github.com/galaxyproject/galaxy/commit/3c7b621b3b320d98025caa7981c70... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/heatmap/heatmap_cluster/config/heatmap_cluster.xml M config/plugins/visualizations/heatmap/heatmap_default/config/heatmap_default.xml Log Message: ----------- Fix entry function specifier for heatmaps Commit: 2507034e936db38024a8b9f70a359d3f28c94e1c https://github.com/galaxyproject/galaxy/commit/2507034e936db38024a8b9f70a359... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M lib/galaxy/visualization/plugins/config_parser.py M lib/galaxy/visualization/plugins/registry.py Log Message: ----------- Remove unused components from config parser Commit: a77cf155e66cecaf2aaa3bcdf87a6c2bae236b63 https://github.com/galaxyproject/galaxy/commit/a77cf155e66cecaf2aaa3bcdf87a6... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M lib/galaxy/visualization/plugins/config_parser.py M lib/galaxy/visualization/plugins/registry.py Log Message: ----------- Fix spacing Commit: e2d339936cb229096ab7e502831a2e90187cdd25 https://github.com/galaxyproject/galaxy/commit/e2d339936cb229096ab7e502831a2... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/qunit/tests/ui_tests.js Log Message: ----------- Fix tests Commit: 8f2f7e088a24f7541d07ca630714636a563d57e6 https://github.com/galaxyproject/galaxy/commit/8f2f7e088a24f7541d07ca6307146... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/layout/page.js M templates/js-app.mako Log Message: ----------- Add embedding features to analysis app Commit: 6b21b258311c3cb923ea40fa374e1e9cb908639d https://github.com/galaxyproject/galaxy/commit/6b21b258311c3cb923ea40fa374e1... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/layout/page.js Log Message: ----------- Fix page template Commit: a109ca9e9bc9b77738acb0438406d7f07e1997dd https://github.com/galaxyproject/galaxy/commit/a109ca9e9bc9b77738acb0438406d... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/layout/page.js Log Message: ----------- Fix panel hiding options Commit: 50c8cb382618f4ac587439154c7f2bd8afb9d161 https://github.com/galaxyproject/galaxy/commit/50c8cb382618f4ac587439154c7f2... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/layout/scratchbook.js Log Message: ----------- Parse panel hiding options for scratchbook embedding Commit: 3ba5b2816ca2c33874c52dc48dfceaf32530e6b0 https://github.com/galaxyproject/galaxy/commit/3ba5b2816ca2c33874c52dc48dfce... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/layout/scratchbook.js Log Message: ----------- Fix scratchbook parameter parsing Commit: cb5c30c32ae42ff6d122c395d8fe50fac559aa88 https://github.com/galaxyproject/galaxy/commit/cb5c30c32ae42ff6d122c395d8fe5... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/visualization-view.js M config/plugins/visualizations/nvd3/nvd3_bar_stacked/config/nvd3_bar_stacked.xml M config/plugins/visualizations/nvd3/nvd3_horizontal/config/nvd3_horizontal.xml M config/plugins/visualizations/nvd3/nvd3_horizontal_stacked/config/nvd3_horizontal_stacked.xml Log Message: ----------- Sort visualizations alphabetically Commit: c09d9c81b46e60a65b08840ac1cd52287c1cea9d https://github.com/galaxyproject/galaxy/commit/c09d9c81b46e60a65b08840ac1cd5... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3/nvd3_horizontal/config/nvd3_horizontal.xml Log Message: ----------- Fix horizontal bar diagram settings Commit: c132eb1c325802134cb40bd7b3f02811679b7671 https://github.com/galaxyproject/galaxy/commit/c132eb1c325802134cb40bd7b3f02... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/msa/config/msa.xml Log Message: ----------- Fix msa configuration settings Commit: 8c6b6b42a66da9fcc4c8747e1a8e850b22ed4033 https://github.com/galaxyproject/galaxy/commit/8c6b6b42a66da9fcc4c8747e1a8e8... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/phylocanvas/static/script.js Log Message: ----------- Fix phylocanvas loader Commit: 6c5fa30128fabbc9274f39e42396c354ebbd332b https://github.com/galaxyproject/galaxy/commit/6c5fa30128fabbc9274f39e42396c... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/style/less/ui.less M static/style/blue/base.css Log Message: ----------- Fix hovering styles Commit: 45b9e9529fbb9934c732549f0d767f40964d8b65 https://github.com/galaxyproject/galaxy/commit/45b9e9529fbb9934c732549f0d767... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/views/editor.js M client/galaxy/scripts/mvc/visualization/chart/views/groups.js M client/galaxy/scripts/mvc/visualization/chart/views/viewport.js Log Message: ----------- New ui Commit: 0004d40be9990895f756fc8f164cec535caaa887 https://github.com/galaxyproject/galaxy/commit/0004d40be9990895f756fc8f164ce... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/views/editor.js M client/galaxy/style/less/charts.less M static/style/blue/base.css Log Message: ----------- Hide unused tabs Commit: 8cf35768fdcf27301f4d739d66e967698ad5893d https://github.com/galaxyproject/galaxy/commit/8cf35768fdcf27301f4d739d66e96... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/views/editor.js M client/galaxy/style/less/charts.less M config/plugins/visualizations/common/templates/chart_entry_point.mako M static/style/blue/base.css Log Message: ----------- Fix margins, refactor app Commit: 269be966a9da235d94d3058b7786c2326697b8c6 https://github.com/galaxyproject/galaxy/commit/269be966a9da235d94d3058b7786c... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/style/less/charts.less M static/style/blue/base.css Log Message: ----------- Add editor buttons Commit: 79fc30c8e49238792abcdc7e9b9299b313a09639 https://github.com/galaxyproject/galaxy/commit/79fc30c8e49238792abcdc7e9b929... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/components/model.js M client/galaxy/scripts/mvc/visualization/chart/views/settings.js M client/galaxy/style/less/charts.less M static/style/blue/base.css Log Message: ----------- Avoid settings reload on visualization refresh Commit: c30a3806a25253ea8ca5bf4a3c7d166d16c2e462 https://github.com/galaxyproject/galaxy/commit/c30a3806a25253ea8ca5bf4a3c7d1... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/style/less/charts.less M static/style/blue/base.css Log Message: ----------- Add transparent operation buttons Commit: 77813a7aecebf05ab086659d434b5ca2624cb466 https://github.com/galaxyproject/galaxy/commit/77813a7aecebf05ab086659d434b5... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/views/viewer.js R client/galaxy/scripts/mvc/visualization/chart/views/viewport.js M client/galaxy/style/less/charts.less M static/style/blue/base.css Log Message: ----------- Add export options and message view Commit: b098ba7952d7db9028b2af503ddd9482ff99425f https://github.com/galaxyproject/galaxy/commit/b098ba7952d7db9028b2af503ddd9... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/components/screenshot.js M client/galaxy/scripts/mvc/visualization/chart/views/editor.js M client/galaxy/scripts/mvc/visualization/chart/views/viewer.js M client/galaxy/style/less/charts.less M static/style/blue/base.css Log Message: ----------- Fix styles and naming Commit: 2257c2ff172f665ebf5dd0e9b2343b0eb1ac9bfe https://github.com/galaxyproject/galaxy/commit/2257c2ff172f665ebf5dd0e9b2343... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/views/editor.js M client/galaxy/style/less/charts.less M static/style/blue/base.css Log Message: ----------- Limit message width, fix icon styles Commit: 18773ebd8f7f0f8f87c1e5460bb5935742ff62fe https://github.com/galaxyproject/galaxy/commit/18773ebd8f7f0f8f87c1e5460bb59... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: A client/galaxy/scripts/mvc/visualization/chart/views/menu.js Log Message: ----------- Add menu options Commit: 72de8cc85fe1e8e6d667a858186cf6ca6d51ff73 https://github.com/galaxyproject/galaxy/commit/72de8cc85fe1e8e6d667a858186cf... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/views/description.js Log Message: ----------- Fix description style Commit: 4fa486082c2ee231fe09b584ed62a11d9146bdcd https://github.com/galaxyproject/galaxy/commit/4fa486082c2ee231fe09b584ed62a... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/style/less/charts.less M static/style/blue/base.css Log Message: ----------- Fix margin style Commit: f2335fe46192187316458d785918b920b61cf293 https://github.com/galaxyproject/galaxy/commit/f2335fe46192187316458d785918b... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/views/groups.js M client/galaxy/scripts/mvc/visualization/chart/views/settings.js Log Message: ----------- Instantly refresh visualizations on setting changes Commit: 9ae6cb1c6e91ed6903b5955df859529ad9ea0a8f https://github.com/galaxyproject/galaxy/commit/9ae6cb1c6e91ed6903b5955df8595... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/views/menu.js M client/galaxy/scripts/mvc/visualization/chart/views/viewer.js M lib/galaxy/visualization/plugins/config_parser.py Log Message: ----------- Fix config parser Commit: 0ff4f7419e7dfbd77c36fd2c362d9e3e8c5a4e89 https://github.com/galaxyproject/galaxy/commit/0ff4f7419e7dfbd77c36fd2c362d9... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js Log Message: ----------- Add label to scratchbook Commit: bd9167400e243392d29cefc235db3bde9bc8a2d8 https://github.com/galaxyproject/galaxy/commit/bd9167400e243392d29cefc235db3... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/style/less/charts.less M static/style/blue/base.css Log Message: ----------- Reduce top padding Commit: 0b30336c213207d58a8e4d24ec871da7289012b6 https://github.com/galaxyproject/galaxy/commit/0b30336c213207d58a8e4d24ec871... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/views/groups.js M client/galaxy/scripts/mvc/visualization/chart/views/viewer.js Log Message: ----------- Cleanup redrawing triggering, remove unused message handlers Commit: 491fa33e8572b5936a4706a25a43b8a58161215a https://github.com/galaxyproject/galaxy/commit/491fa33e8572b5936a4706a25a43b... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M config/plugins/visualizations/heatmap/heatmap_cluster/config/heatmap_cluster.xml M config/plugins/visualizations/heatmap/heatmap_default/config/heatmap_default.xml M config/plugins/visualizations/nvd3/nvd3_bar/config/nvd3_bar.xml M config/plugins/visualizations/nvd3/nvd3_bar_stacked/config/nvd3_bar_stacked.xml M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml M config/plugins/visualizations/nvd3/nvd3_horizontal/config/nvd3_horizontal.xml M config/plugins/visualizations/nvd3/nvd3_horizontal_stacked/config/nvd3_horizontal_stacked.xml M config/plugins/visualizations/nvd3/nvd3_line/config/nvd3_line.xml M config/plugins/visualizations/nvd3/nvd3_line_focus/config/nvd3_line_focus.xml M config/plugins/visualizations/nvd3/nvd3_pie/config/nvd3_pie.xml M config/plugins/visualizations/nvd3/nvd3_scatter/config/nvd3_scatter.xml M config/plugins/visualizations/nvd3/nvd3_stackedarea/config/nvd3_stackedarea.xml M config/plugins/visualizations/nvd3/nvd3_stackedarea_full/config/nvd3_stackedarea_full.xml M config/plugins/visualizations/nvd3/nvd3_stackedarea_stream/config/nvd3_stackedarea_stream.xml M config/plugins/visualizations/scatterplot/config/scatterplot.xml M config/plugins/visualizations/venn/config/venn.xml Log Message: ----------- Show list for all visualization types Commit: 39ad58066b6ebabc00657f7b0421f787c93a6570 https://github.com/galaxyproject/galaxy/commit/39ad58066b6ebabc00657f7b0421f... Author: guerler <aysam.guerler@gmail.com> Date: 2018-02-11 (Sun, 11 Feb 2018) Changed paths: M static/style/blue/base.css Log Message: ----------- Repack style sheets Commit: 54659b085f78dabfc987d8292e6d4750ecc83dd7 https://github.com/galaxyproject/galaxy/commit/54659b085f78dabfc987d8292e6d4... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/visualization/chart/chart-client.js M client/galaxy/scripts/mvc/visualization/chart/utilities/datasets.js M client/galaxy/scripts/mvc/visualization/chart/utilities/jobs.js M client/galaxy/scripts/mvc/visualization/chart/views/groups.js M client/galaxy/scripts/mvc/visualization/chart/views/menu.js M client/galaxy/scripts/mvc/visualization/visualization-view.js M client/galaxy/scripts/qunit/tests/ui_tests.js Log Message: ----------- Client format Commit: be7f503448a6ffd5f5a63d27e6c54601dd558271 https://github.com/galaxyproject/galaxy/commit/be7f503448a6ffd5f5a63d27e6c54... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M config/plugins/visualizations/example/package.json M config/plugins/visualizations/example/src/script.js M config/plugins/visualizations/example/static/script.js Log Message: ----------- Fix example plugin imports Commit: 6c68e8e980c7155dee8389e25d90b25864aa2bd7 https://github.com/galaxyproject/galaxy/commit/6c68e8e980c7155dee8389e25d90b... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: R config/plugins/visualizations/graphviz/static/js/jquery.qtip.js R config/plugins/visualizations/graphviz/static/js/tip_centerwindow.js R config/plugins/visualizations/graphviz/static/js/tip_followscroll.js M config/plugins/visualizations/graphviz/templates/graphviz.mako Log Message: ----------- Graphviz cleanup Commit: 5d4301ab3c73de38125a43f3a5f3e0c38a0d28cd https://github.com/galaxyproject/galaxy/commit/5d4301ab3c73de38125a43f3a5f3e... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3/nvd3_bar/package.json M config/plugins/visualizations/nvd3/nvd3_bar/src/nvd3.js Log Message: ----------- Fix imports in nvd3.js, include underscore in package bundle Commit: fafcfbb5774033098ca5a6745b86d97d7cc5e177 https://github.com/galaxyproject/galaxy/commit/fafcfbb5774033098ca5a6745b86d... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3/nvd3_bar/src/nvd3.js Log Message: ----------- Remove duplicate key for nvd3_line lineChart. Commit: a82f4a1ae10457071ffad01956f27dd74a8b5574 https://github.com/galaxyproject/galaxy/commit/a82f4a1ae10457071ffad01956f27... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M config/plugins/visualizations/nvd3/nvd3_bar/package.json M config/plugins/visualizations/nvd3/nvd3_bar/src/nvd3.js M config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.js Log Message: ----------- Document jquery entanglement Commit: 320f1fccac8daac11b5411d36c947b707857575b https://github.com/galaxyproject/galaxy/commit/320f1fccac8daac11b5411d36c947... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M config/plugins/visualizations/heatmap/heatmap_default/src/script.js Log Message: ----------- Incremental cleanup in heatmap default viz Commit: 997e31b88100ef38294632bf138c5994fd006316 https://github.com/galaxyproject/galaxy/commit/997e31b88100ef38294632bf138c5... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M config/plugins/visualizations/heatmap/heatmap_default/src/script.js Log Message: ----------- More heatmap cleanup, trying to fix heatmap_cluster Commit: 15d8afeddd3d7b1cd19595a1af2e7c3d275cc24c https://github.com/galaxyproject/galaxy/commit/15d8afeddd3d7b1cd19595a1af2e7... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M config/plugins/visualizations/heatmap/heatmap_default/package.json M config/plugins/visualizations/heatmap/heatmap_default/src/script.js M config/plugins/visualizations/heatmap/heatmap_default/static/script.js Log Message: ----------- Swap d3-3 back to d3 with a version pin. Commit: d5c089acc7467d9dd218485acb9f8c02594f9cff https://github.com/galaxyproject/galaxy/commit/d5c089acc7467d9dd218485acb9f8... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/chart-client.js Log Message: ----------- Remove unused import, add required backbone import, document $, Galaxy globals Commit: cd1ed9bb56ecaff61b09e48f183f3bf3f93595b9 https://github.com/galaxyproject/galaxy/commit/cd1ed9bb56ecaff61b09e48f183f3... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/components/model.js Log Message: ----------- Add backbone import to components/model in viz Commit: c18eafce90fd247e914c922561017198f6ab3a0c https://github.com/galaxyproject/galaxy/commit/c18eafce90fd247e914c922561017... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/utilities/datasets.js Log Message: ----------- Fix some conflicting var defs (use let for scope control) in chart utils Commit: 13c40b1cffaf26b05468a00baa36f7e5b35df0a8 https://github.com/galaxyproject/galaxy/commit/13c40b1cffaf26b05468a00baa36f... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/utilities/jobs.js Log Message: ----------- Cleanup in viz/utils/jobs, clarify scope in a few places and remove unused vars Commit: e9b26b4bd00052d8b75578a30f1aee7cc2f6be1a https://github.com/galaxyproject/galaxy/commit/e9b26b4bd00052d8b75578a30f1ae... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-13 (Tue, 13 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/utilities/series.js Log Message: ----------- Document conflicting global d3 in series, minor refactoring. Commit: 5b66429cb44836b1a56fb76c5e644b814ef5fd5c https://github.com/galaxyproject/galaxy/commit/5b66429cb44836b1a56fb76c5e644... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-14 (Wed, 14 Feb 2018) Changed paths: M config/plugins/visualizations/heatmap/heatmap_default/static/script.js M config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.js Log Message: ----------- Rebuild heatmap, nvd3 after refactoring. Commit: 0b137669d7d2d8df2c63a6436ddb812001a82327 https://github.com/galaxyproject/galaxy/commit/0b137669d7d2d8df2c63a6436ddb8... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-14 (Wed, 14 Feb 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js A client/galaxy/scripts/apps/chart.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/ui/ui-thumbnails.js A client/galaxy/scripts/mvc/visualization/chart/chart-client.js A client/galaxy/scripts/mvc/visualization/chart/components/model.js A client/galaxy/scripts/mvc/visualization/chart/components/screenshot.js A client/galaxy/scripts/mvc/visualization/chart/utilities/datasets.js A client/galaxy/scripts/mvc/visualization/chart/utilities/jobs.js A client/galaxy/scripts/mvc/visualization/chart/utilities/series.js A client/galaxy/scripts/mvc/visualization/chart/views/description.js A client/galaxy/scripts/mvc/visualization/chart/views/editor.js A client/galaxy/scripts/mvc/visualization/chart/views/groups.js A client/galaxy/scripts/mvc/visualization/chart/views/menu.js A client/galaxy/scripts/mvc/visualization/chart/views/settings.js A client/galaxy/scripts/mvc/visualization/chart/views/viewer.js A client/galaxy/scripts/mvc/visualization/visualization-view.js M client/galaxy/scripts/qunit/tests/ui_tests.js M client/galaxy/style/less/base.less A client/galaxy/style/less/charts.less M client/galaxy/style/less/ui.less M client/webpack.config.js R config/plugins/visualizations/charts/config/charts.xml R config/plugins/visualizations/charts/package.json R config/plugins/visualizations/charts/static/client/app.css R config/plugins/visualizations/charts/static/client/app.js R config/plugins/visualizations/charts/static/client/components/model.js R config/plugins/visualizations/charts/static/client/components/screenshot.js R config/plugins/visualizations/charts/static/client/views/description.js R config/plugins/visualizations/charts/static/client/views/editor.js R config/plugins/visualizations/charts/static/client/views/groups.js R config/plugins/visualizations/charts/static/client/views/settings.js R config/plugins/visualizations/charts/static/client/views/viewer.js R config/plugins/visualizations/charts/static/client/views/viewport.js R config/plugins/visualizations/charts/static/repository/build/benfred_venn.js R config/plugins/visualizations/charts/static/repository/build/benfred_venn.js.map R config/plugins/visualizations/charts/static/repository/build/biojs_drawrnajs.js R config/plugins/visualizations/charts/static/repository/build/biojs_drawrnajs.js.map R config/plugins/visualizations/charts/static/repository/build/biojs_msa.js R config/plugins/visualizations/charts/static/repository/build/biojs_msa.js.map R config/plugins/visualizations/charts/static/repository/build/biojs_phylocanvas.js R config/plugins/visualizations/charts/static/repository/build/biojs_phylocanvas.js.map R config/plugins/visualizations/charts/static/repository/build/cytoscape_viewer.js R config/plugins/visualizations/charts/static/repository/build/cytoscape_viewer.js.map R config/plugins/visualizations/charts/static/repository/build/jqplot_bar.js R config/plugins/visualizations/charts/static/repository/build/jqplot_bar.js.map R config/plugins/visualizations/charts/static/repository/build/jqplot_boxplot.js R config/plugins/visualizations/charts/static/repository/build/jqplot_boxplot.js.map R config/plugins/visualizations/charts/static/repository/build/jqplot_histogram_discrete.js R config/plugins/visualizations/charts/static/repository/build/jqplot_histogram_discrete.js.map R config/plugins/visualizations/charts/static/repository/build/jqplot_line.js R config/plugins/visualizations/charts/static/repository/build/jqplot_line.js.map R config/plugins/visualizations/charts/static/repository/build/jqplot_scatter.js R config/plugins/visualizations/charts/static/repository/build/jqplot_scatter.js.map R config/plugins/visualizations/charts/static/repository/build/ngl_viewer.js R config/plugins/visualizations/charts/static/repository/build/ngl_viewer.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_bar.js R config/plugins/visualizations/charts/static/repository/build/nvd3_bar.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_bar_horizontal.js R config/plugins/visualizations/charts/static/repository/build/nvd3_bar_horizontal.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_bar_horizontal_stacked.js R config/plugins/visualizations/charts/static/repository/build/nvd3_bar_horizontal_stacked.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_bar_stacked.js R config/plugins/visualizations/charts/static/repository/build/nvd3_bar_stacked.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_histogram.js R config/plugins/visualizations/charts/static/repository/build/nvd3_histogram.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_histogram_discrete.js R config/plugins/visualizations/charts/static/repository/build/nvd3_histogram_discrete.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_line.js R config/plugins/visualizations/charts/static/repository/build/nvd3_line.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_line_focus.js R config/plugins/visualizations/charts/static/repository/build/nvd3_line_focus.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_pie.js R config/plugins/visualizations/charts/static/repository/build/nvd3_pie.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_scatter.js R config/plugins/visualizations/charts/static/repository/build/nvd3_scatter.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_stackedarea.js R config/plugins/visualizations/charts/static/repository/build/nvd3_stackedarea.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_stackedarea_full.js R config/plugins/visualizations/charts/static/repository/build/nvd3_stackedarea_full.js.map R config/plugins/visualizations/charts/static/repository/build/nvd3_stackedarea_stream.js R config/plugins/visualizations/charts/static/repository/build/nvd3_stackedarea_stream.js.map R config/plugins/visualizations/charts/static/repository/build/others_example.js R config/plugins/visualizations/charts/static/repository/build/others_example.js.map R config/plugins/visualizations/charts/static/repository/build/others_heatmap.js R config/plugins/visualizations/charts/static/repository/build/others_heatmap.js.map R config/plugins/visualizations/charts/static/repository/build/others_heatmap_cluster.js R config/plugins/visualizations/charts/static/repository/build/others_heatmap_cluster.js.map R config/plugins/visualizations/charts/static/repository/build/pv_viewer.js R config/plugins/visualizations/charts/static/repository/build/pv_viewer.js.map R config/plugins/visualizations/charts/static/repository/build/registry.js R config/plugins/visualizations/charts/static/repository/build/registry.js.map R config/plugins/visualizations/charts/static/repository/build/registry.tmp.js R config/plugins/visualizations/charts/static/repository/plugins/benfred/venn.css R config/plugins/visualizations/charts/static/repository/plugins/benfred/venn.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/biojs.msa.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/drawrna.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/layout.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/base.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/connection.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/getnaview.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/loop.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/naview.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/radloop.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/naview/region.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/layouts/radiate/getradiate.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/models/link.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/models/linkcol.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/models/ncanno.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/models/residue.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/models/residuecol.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/models/structure.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/utils/.Rhistory R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/utils/lasso.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/utils/parsedbr.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/utils/spectrum.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/utils/style.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/views/annoview.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/views/optspanel.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/views/seqpanel.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/drawrnajs/views/vispanel.js R config/plugins/visualizations/charts/static/repository/plugins/biojs/phylocanvas/phylocanvas.js R config/plugins/visualizations/charts/static/repository/plugins/cytoscape/cytoscape.js R config/plugins/visualizations/charts/static/repository/plugins/jqplot/jquery.jqplot.css R config/plugins/visualizations/charts/static/repository/plugins/jqplot/jquery.jqplot.js R config/plugins/visualizations/charts/static/repository/plugins/jqplot/jquery.jqplot.plugins.js R config/plugins/visualizations/charts/static/repository/plugins/ngl/viewer.js R config/plugins/visualizations/charts/static/repository/plugins/nvd3/nv.d3.css R config/plugins/visualizations/charts/static/repository/plugins/nvd3/nv.d3.js R config/plugins/visualizations/charts/static/repository/plugins/pv/viewer.js R config/plugins/visualizations/charts/static/repository/registry.json R config/plugins/visualizations/charts/static/repository/utilities/jobs.js R config/plugins/visualizations/charts/static/repository/utilities/sifjson.js R config/plugins/visualizations/charts/static/repository/utilities/utils.js R config/plugins/visualizations/charts/static/repository/visualizations/benfred/venn/config.js R config/plugins/visualizations/charts/static/repository/visualizations/benfred/venn/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/benfred/venn/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/biojs/drawrnajs/config.js R config/plugins/visualizations/charts/static/repository/visualizations/biojs/drawrnajs/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/biojs/drawrnajs/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/biojs/msa/config.js R config/plugins/visualizations/charts/static/repository/visualizations/biojs/msa/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/biojs/msa/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/config.js R config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/cytoscape/viewer/config.js R config/plugins/visualizations/charts/static/repository/visualizations/cytoscape/viewer/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/cytoscape/viewer/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/bar/config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/bar/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/bar/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/boxplot/config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/boxplot/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/boxplot/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/common/config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/common/plot-config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/common/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/histogram_discrete/config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/histogram_discrete/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/histogram_discrete/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/line/config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/line/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/line/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/scatter/config.js R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/scatter/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/jqplot/scatter/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/ngl/viewer/config.js R config/plugins/visualizations/charts/static/repository/visualizations/ngl/viewer/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/ngl/viewer/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_horizontal/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_horizontal/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_horizontal/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_horizontal_stacked/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_horizontal_stacked/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_horizontal_stacked/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_stacked/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_stacked/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/bar_stacked/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/common/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/common/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/histogram/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/histogram/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/histogram/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/histogram_discrete/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/histogram_discrete/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/histogram_discrete/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/line/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/line/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/line/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/line_focus/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/line_focus/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/line_focus/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/pie/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/pie/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/pie/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/scatter/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/scatter/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/scatter/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea_full/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea_full/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea_full/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea_stream/config.js R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea_stream/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/nvd3/stackedarea_stream/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/others/example/config.js R config/plugins/visualizations/charts/static/repository/visualizations/others/example/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/others/example/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap/config.js R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap/heatmap-parameters.js R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap/heatmap-plugin.js R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap_cluster/config.js R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap_cluster/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/others/heatmap_cluster/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/pv/viewer/config.js R config/plugins/visualizations/charts/static/repository/visualizations/pv/viewer/logo.png R config/plugins/visualizations/charts/static/repository/visualizations/pv/viewer/wrapper.js R config/plugins/visualizations/charts/static/repository/visualizations/utilities/tabular-datasets.js R config/plugins/visualizations/charts/static/repository/visualizations/utilities/tabular-form.js R config/plugins/visualizations/charts/static/repository/visualizations/utilities/tabular-utilities.js R config/plugins/visualizations/charts/templates/charts.mako R config/plugins/visualizations/charts/webpack.config.js A config/plugins/visualizations/common/templates/chart_entry_point.mako M config/plugins/visualizations/common/templates/script_entry_point.mako A config/plugins/visualizations/cytoscape/config/cytoscape.xml A config/plugins/visualizations/cytoscape/package.json A config/plugins/visualizations/cytoscape/src/script.js A config/plugins/visualizations/cytoscape/static/logo.png A config/plugins/visualizations/cytoscape/static/script.js A config/plugins/visualizations/drawrna/config/drawrna.xml A config/plugins/visualizations/drawrna/package.json A config/plugins/visualizations/drawrna/src/drawrnajs/drawrna.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/layout.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/base.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/connection.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/getnaview.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/loop.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/naview.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/radloop.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/naview/region.js A config/plugins/visualizations/drawrna/src/drawrnajs/layouts/radiate/getradiate.js A config/plugins/visualizations/drawrna/src/drawrnajs/models/link.js A config/plugins/visualizations/drawrna/src/drawrnajs/models/linkcol.js A config/plugins/visualizations/drawrna/src/drawrnajs/models/ncanno.js A config/plugins/visualizations/drawrna/src/drawrnajs/models/residue.js A config/plugins/visualizations/drawrna/src/drawrnajs/models/residuecol.js A config/plugins/visualizations/drawrna/src/drawrnajs/models/structure.js A config/plugins/visualizations/drawrna/src/drawrnajs/utils/.Rhistory A config/plugins/visualizations/drawrna/src/drawrnajs/utils/lasso.js A config/plugins/visualizations/drawrna/src/drawrnajs/utils/parsedbr.js A config/plugins/visualizations/drawrna/src/drawrnajs/utils/spectrum.js A config/plugins/visualizations/drawrna/src/drawrnajs/utils/style.js A config/plugins/visualizations/drawrna/src/drawrnajs/views/annoview.js A config/plugins/visualizations/drawrna/src/drawrnajs/views/optspanel.js A config/plugins/visualizations/drawrna/src/drawrnajs/views/seqpanel.js A config/plugins/visualizations/drawrna/src/drawrnajs/views/vispanel.js A config/plugins/visualizations/drawrna/src/script.js A config/plugins/visualizations/drawrna/static/logo.png A config/plugins/visualizations/drawrna/static/script.js A config/plugins/visualizations/example/config/example.xml A config/plugins/visualizations/example/package.json A config/plugins/visualizations/example/src/script.js A config/plugins/visualizations/example/static/logo.png A config/plugins/visualizations/example/static/script.js R config/plugins/visualizations/graphviz/static/js/jquery.qtip.js R config/plugins/visualizations/graphviz/static/js/tip_centerwindow.js R config/plugins/visualizations/graphviz/static/js/tip_followscroll.js M config/plugins/visualizations/graphviz/templates/graphviz.mako A config/plugins/visualizations/heatmap/heatmap_cluster/config/heatmap_cluster.xml A config/plugins/visualizations/heatmap/heatmap_cluster/static/logo.png A config/plugins/visualizations/heatmap/heatmap_default/config/heatmap_default.xml A config/plugins/visualizations/heatmap/heatmap_default/config/heatmap_shared.xml A config/plugins/visualizations/heatmap/heatmap_default/package.json A config/plugins/visualizations/heatmap/heatmap_default/src/colorsets.js A config/plugins/visualizations/heatmap/heatmap_default/src/script.js A config/plugins/visualizations/heatmap/heatmap_default/static/logo.png A config/plugins/visualizations/heatmap/heatmap_default/static/script.js A config/plugins/visualizations/jqplot/jqplot_bar/config/jqplot_bar.xml A config/plugins/visualizations/jqplot/jqplot_bar/config/jqplot_shared.xml A config/plugins/visualizations/jqplot/jqplot_bar/package.json A config/plugins/visualizations/jqplot/jqplot_bar/src/script.js A config/plugins/visualizations/jqplot/jqplot_bar/static/logo.png A config/plugins/visualizations/jqplot/jqplot_bar/static/script.css A config/plugins/visualizations/jqplot/jqplot_bar/static/script.js A config/plugins/visualizations/jqplot/jqplot_box/config/jqplot_box.xml A config/plugins/visualizations/jqplot/jqplot_box/static/logo.png A config/plugins/visualizations/jqplot/jqplot_histogram/config/jqplot_histogram.xml A config/plugins/visualizations/jqplot/jqplot_histogram/static/logo.png A config/plugins/visualizations/jqplot/jqplot_line/config/jqplot_line.xml A config/plugins/visualizations/jqplot/jqplot_line/static/logo.png A config/plugins/visualizations/jqplot/jqplot_scatter/config/jqplot_scatter.xml A config/plugins/visualizations/jqplot/jqplot_scatter/static/logo.png A config/plugins/visualizations/msa/config/msa.xml A config/plugins/visualizations/msa/package.json A config/plugins/visualizations/msa/src/msa.js A config/plugins/visualizations/msa/static/logo.png A config/plugins/visualizations/msa/static/script.js A config/plugins/visualizations/ngl/config/ngl.xml A config/plugins/visualizations/ngl/package.json A config/plugins/visualizations/ngl/src/ngl.js A config/plugins/visualizations/ngl/src/viewer.js A config/plugins/visualizations/ngl/static/logo.png A config/plugins/visualizations/ngl/static/ngl.js A config/plugins/visualizations/nvd3/nvd3_bar/.babelrc A config/plugins/visualizations/nvd3/nvd3_bar/config/nvd3_bar.xml A config/plugins/visualizations/nvd3/nvd3_bar/config/nvd3_shared.xml A config/plugins/visualizations/nvd3/nvd3_bar/package.json A config/plugins/visualizations/nvd3/nvd3_bar/src/nvd3.js A config/plugins/visualizations/nvd3/nvd3_bar/static/logo.png A config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.css A config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.js A config/plugins/visualizations/nvd3/nvd3_bar_stacked/config/nvd3_bar_stacked.xml A config/plugins/visualizations/nvd3/nvd3_bar_stacked/static/logo.png A config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml A config/plugins/visualizations/nvd3/nvd3_histogram/static/logo.png A config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml A config/plugins/visualizations/nvd3/nvd3_histogram_discrete/static/logo.png A config/plugins/visualizations/nvd3/nvd3_horizontal/config/nvd3_horizontal.xml A config/plugins/visualizations/nvd3/nvd3_horizontal/static/logo.png A config/plugins/visualizations/nvd3/nvd3_horizontal_stacked/config/nvd3_horizontal_stacked.xml A config/plugins/visualizations/nvd3/nvd3_horizontal_stacked/static/logo.png A config/plugins/visualizations/nvd3/nvd3_line/config/nvd3_line.xml A config/plugins/visualizations/nvd3/nvd3_line/static/logo.png A config/plugins/visualizations/nvd3/nvd3_line_focus/config/nvd3_line_focus.xml A config/plugins/visualizations/nvd3/nvd3_line_focus/static/logo.png A config/plugins/visualizations/nvd3/nvd3_pie/config/nvd3_pie.xml A config/plugins/visualizations/nvd3/nvd3_pie/static/logo.png A config/plugins/visualizations/nvd3/nvd3_scatter/config/nvd3_scatter.xml A config/plugins/visualizations/nvd3/nvd3_scatter/static/logo.png A config/plugins/visualizations/nvd3/nvd3_stackedarea/config/nvd3_stackedarea.xml A config/plugins/visualizations/nvd3/nvd3_stackedarea/static/logo.png A config/plugins/visualizations/nvd3/nvd3_stackedarea_full/config/nvd3_stackedarea_full.xml A config/plugins/visualizations/nvd3/nvd3_stackedarea_full/static/logo.png A config/plugins/visualizations/nvd3/nvd3_stackedarea_stream/config/nvd3_stackedarea_stream.xml A config/plugins/visualizations/nvd3/nvd3_stackedarea_stream/static/logo.png A config/plugins/visualizations/phylocanvas/config/phylocanvas.xml A config/plugins/visualizations/phylocanvas/package.json A config/plugins/visualizations/phylocanvas/src/script.js A config/plugins/visualizations/phylocanvas/static/logo.png A config/plugins/visualizations/phylocanvas/static/script.js A config/plugins/visualizations/pv/config/pv.xml A config/plugins/visualizations/pv/package.json A config/plugins/visualizations/pv/src/pv.js A config/plugins/visualizations/pv/static/logo.png A config/plugins/visualizations/pv/static/pv.js M config/plugins/visualizations/scatterplot/config/scatterplot.xml M config/plugins/visualizations/scatterplot/package.json A config/plugins/visualizations/scatterplot/src/numeric-column-stats.js M config/plugins/visualizations/scatterplot/src/scatterplot.js A config/plugins/visualizations/scatterplot/src/worker-stats.js A config/plugins/visualizations/scatterplot/static/8850628034555be072a0e4f882d4d8e5.js R config/plugins/visualizations/scatterplot/static/numeric-column-stats.js R config/plugins/visualizations/scatterplot/static/scatterplot.bundle.js A config/plugins/visualizations/scatterplot/static/scatterplot.js R config/plugins/visualizations/scatterplot/static/worker-stats.js M config/plugins/visualizations/scatterplot/templates/scatterplot.mako R config/plugins/visualizations/scatterplot/webpack.config.js A config/plugins/visualizations/venn/config/venn.xml A config/plugins/visualizations/venn/package.json A config/plugins/visualizations/venn/src/script.js A config/plugins/visualizations/venn/src/venn.js A config/plugins/visualizations/venn/static/logo.png A config/plugins/visualizations/venn/static/script.css A config/plugins/visualizations/venn/static/script.js M lib/galaxy/util/xml_macros.py M lib/galaxy/visualization/plugins/config_parser.py M lib/galaxy/visualization/plugins/plugin.py M lib/galaxy/visualization/plugins/registry.py M lib/galaxy/webapps/galaxy/api/visualizations.py M lib/galaxy/webapps/galaxy/buildapp.py R static/scripts/packed M static/style/blue/base.css M templates/js-app.mako M test/api/test_visualizations.py Log Message: ----------- Merge pull request #5505 from guerler/revise_charts_ui Integration of charts into the generic visualization framework Compare: https://github.com/galaxyproject/galaxy/compare/39fd5fdc05e8...0b137669d7d2