Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: e193e46e30d84d7f844a2941f72ed65af11f69b3 https://github.com/galaxyproject/galaxy/commit/e193e46e30d84d7f844a2941f72ed... Author: Marius van den Beek m.vandenbeek@gmail.com Date: 2016-04-15 (Fri, 15 Apr 2016)
Changed paths: M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh
Log Message: ----------- Place $headers before integrity_check
PBS needs the resource selection (which will be filled in using $headers) to appear before anything else (except the shebang), so this changes the order.
Commit: 434321915a61f53cd668170da076251a8c15889f https://github.com/galaxyproject/galaxy/commit/434321915a61f53cd668170da0762... Author: Marius van den Beek m.vandenbeek@gmail.com Date: 2016-04-15 (Fri, 15 Apr 2016)
Changed paths: M lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh
Log Message: ----------- Use "$NCPUS" if defined to set GALAXY_SLOTS
On our PBS cluster we do not have $PBS_NCPUS, and $PBS_NODEFILE contains the hostname of the nodes the task runs on. But we do have "$NCPUS" with the correct number of CPUS.
Commit: 8e72b3095bacdac90a6fa7dea6125f489826bcfd https://github.com/galaxyproject/galaxy/commit/8e72b3095bacdac90a6fa7dea6125... Author: Martin Cech cech.marten@gmail.com Date: 2016-04-15 (Fri, 15 Apr 2016)
Changed paths: M lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh
Log Message: ----------- Merge pull request #2174 from mvdbeek/reorder_job_template
[16.01] Backport #2146 #2145
Compare: https://github.com/galaxyproject/galaxy/compare/18c00899a30c...8e72b3095bac