1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/e290746008f2/ Changeset: e290746008f2 User: jmchilton Date: 2013-11-05 15:44:16 Summary: Fix stop_job bug in pbs runner and handle exit code -11. Affected #: 1 file diff -r 0b5d6dbb6a310b29e08111e67261d53561bb22ce -r e290746008f2951df07655df8086015fa3e0cf3f lib/galaxy/jobs/runners/pbs.py --- a/lib/galaxy/jobs/runners/pbs.py +++ b/lib/galaxy/jobs/runners/pbs.py @@ -80,6 +80,7 @@ -6: "job aborted on MOM init, chkpt, ok migrate", -7: "job restart failed", -8: "exec() of user command failed", + -11: "job maximum walltime exceeded", } @@ -414,6 +415,7 @@ except AssertionError: pbs_job_state.fail_message = 'Job cannot be completed due to a cluster error, please retry it later' log.error( '(%s/%s) PBS job failed: %s' % ( galaxy_job_id, job_id, JOB_EXIT_STATUS.get( int( status.exit_status ), 'Unknown error: %s' % status.exit_status ) ) ) + pbs_job_state.stop_job = False self.work_queue.put( ( self.fail_job, pbs_job_state ) ) continue except AttributeError: Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.